>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor|
            (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin
            sulfate proteoglycan) (3H1 keratan sulfate proteoglycan)
          Length = 2316

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +1

Query: 334  MPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*S--PILQGSPACPADPGSLH 507
            +PS P+   LTETP+ E S   +  P  S S+ S+  +H +  P+L  SP+    P SL 
Sbjct: 1207 LPSGPRDPVLTETPMVEQSSSSVSLPLASESASSKSTLHFTSVPVLNMSPS-DVHPTSLQ 1265

Query: 508  QEPVSQHSTEE 540
            +  V  HS EE
Sbjct: 1266 RLTV-PHSREE 1275

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = -2

Query: 497  PGSAGHAGEPCSMGDQWTHCSETEDGLRGGFRSIGLEASRRGVSVRGAI*GGEGMHLPGR 318
            PGS G AG P + G      S    G RG     G    +      G + GGEG  LPGR
Sbjct: 1307 PGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGR 1366

Query: 317  R 315
            +
Sbjct: 1367 K 1367

>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = +1

Query: 322  PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPAD--- 492
            P    P P  + PL   PL + S    +KPP SP  +  Q V     +QGSP  PA    
Sbjct: 1196 PPPAEPPPTDLMPLPPLPLPDGSARKPVKPPVSPKPILAQPV---SKIQGSPT-PASKKV 1251

Query: 493  --PGSLHQEPVSQHST 534
              PG    E    H T
Sbjct: 1252 PLPGPGSPEVKRAHGT 1267

>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (Protein grappa) (DOT1-like protein)
            (dDOT1L)
          Length = 1848

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +1

Query: 343  PPQIAPLTETPLREASRP----MLLKPPRSPSSVSEQCVH*SPILQGSPACPADPGSLHQ 510
            PPQ  PL   P   ++        ++PP  PSS S Q        Q SPA  A    L Q
Sbjct: 1290 PPQTQPLELLPRASSANSDYSGYRIRPPSRPSSNSSQ----PDYTQVSPAKMALRRHLSQ 1345

Query: 511  EPVSQHSTEE 540
            E +SQH T +
Sbjct: 1346 EKLSQHVTPQ 1355

>COLQ_RAT (O35167) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit) (Acetylcholinesterase-associated
           collagen)
          Length = 458

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = +1

Query: 286 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 465
           +P L Q + G     C+  PP   PL   P    SR  LL P     ++ E     SP +
Sbjct: 37  LPGLDQKKRGNHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCM 93

Query: 466 QGSPACPADPG 498
           QGS   P  PG
Sbjct: 94  QGSLGSPGPPG 104

>SPB4_GIBZE (Q4HVW2) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)|
          Length = 637

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = -3

Query: 580 NVLISDSGRRIFVF-------PQCYAEKQALGEVSQDLLDTQVNPAVWEISGHIVLKRRT 422
           NVLIS  GR + +        PQ   E   L E  + LLD    P + +I  H+  +RRT
Sbjct: 164 NVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADR-LLDLGFKPDLQKILSHLPKQRRT 222

Query: 421 DFEEASEASAWRLLAEVSLSEERFEEVKACI 329
               AS + A   +  V L      EVK  I
Sbjct: 223 GLFSASVSEAVGEIIRVGLRNPVKIEVKVKI 253

>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
           (Foocen) (Neuroendocrine-specific protein) (NSP)
           (Neuroendocrine-specific protein C homolog) (RTN-x)
           (Reticulon-5)
          Length = 1192

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +1

Query: 337 PSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADPGSLHQEP 516
           PSP   A ++ + L E   P    PP  P+SVS Q     P+       PA P S    P
Sbjct: 120 PSPLSAAAVSPSKLPEDDEPPARPPPPPPASVSPQA---EPVWTPPAPAPAAPPSTPAAP 176

Query: 517 VSQHST 534
             + S+
Sbjct: 177 KRRGSS 182

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 337 PSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADP-GSLHQE 513
           P  PQ AP T +       P +  PPR PSS        SP L G P  PA P GSL + 
Sbjct: 644 PPAPQPAPRTLSHWSALLSPPV--PPRPPSSGPPPAPPLSPALSGLPR-PASPYGSLRRH 700

Query: 514 P 516
           P
Sbjct: 701 P 701

>COLQ_MOUSE (O35348) Acetylcholinesterase collagenic tail peptide (AChE Q|
           subunit) (Acetylcholinesterase-associated collagen)
           (Fragment)
          Length = 236

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = +1

Query: 286 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 465
           +P L Q + G     C+  PP   PL   P    SR  LL P     ++ E     SP +
Sbjct: 1   LPGLDQKKRGSHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCI 57

Query: 466 QGSPACPADPG 498
           QGS   P  PG
Sbjct: 58  QGSLGSPGPPG 68

>CINA_GEOKA (Q5L0F7) CinA-like protein|
          Length = 414

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 520 KQALGEVSQDLLDTQVNPAVWEISGHIVLKRRTDFEEASEASAWRLLAEV 371
           + AL     DL+D Q NP +  ++G   +  R   +   EA A RLL EV
Sbjct: 190 ESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEV 239

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/52 (40%), Positives = 22/52 (42%)
 Frame = +1

Query: 322  PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSP 477
            P    P P  +A L   P  E       KPP SP  V  Q V   P LQGSP
Sbjct: 1195 PPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPV---PKLQGSP 1243

>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 863

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 322 PGRCMPSPP-QIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADPG 498
           P    PSP   +  L+     + +   LL+PP  P S SE  VH       +P  P +P 
Sbjct: 500 PPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVH-------APGTPGNPV 552

Query: 499 SL 504
           SL
Sbjct: 553 SL 554

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/69 (36%), Positives = 29/69 (42%)
 Frame = -2

Query: 521 ETGSW*SEPGSAGHAGEPCSMGDQWTHCSETEDGLRGGFRSIGLEASRRGVSVRGAI*GG 342
           ETG+   EPGSAG  G P   G++    S  E G  G     GL  S     + GA    
Sbjct: 362 ETGNK-GEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRA 420

Query: 341 EGMHLPGRR 315
             M  PG R
Sbjct: 421 GVMGPPGNR 429

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 316  RRPGRCMPSPPQIAPLTETPLREAS--RPMLLKPPRSPSSVSEQCVH*SPILQGSPACPA 489
            R     MP+PP+  P+ E+  +  S  R   L P  +P   S+     S I+ G P    
Sbjct: 2476 RELSNAMPAPPKTTPVVESKQKSDSVDRAPTLPPKAAPLPPSDA----SAIMSGKPVFKY 2531

Query: 490  DPGSLHQEPVS 522
             PG+    P S
Sbjct: 2532 TPGNKSAVPPS 2542

>COLQ_HUMAN (Q9Y215) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit) (Acetylcholinesterase-associated
           collagen)
          Length = 456

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = +1

Query: 286 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 465
           +P L Q + G     C+ +PP   PL   P     R  LL P      +  +    SP +
Sbjct: 37  LPSLDQKKRGGHKACCLLTPPP-PPLFPPPFFRGGRSPLLSPDMKNLMLELETSQ-SPCM 94

Query: 466 QGSPACPADPG 498
           QGS   P  PG
Sbjct: 95  QGSLGSPGPPG 105

>ACSA2_ACEXY (Q59167) Cellulose synthase 2 [Includes: Cellulose synthase|
           catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic
           di-GMP-binding domain (Cellulose synthase 2 regulatory
           domain)]
          Length = 1596

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 319 RPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADPG 498
           +P   +P+PPQIAP +   L  A+  + L    +   + E+    + +   SP    + G
Sbjct: 798 QPPGTLPTPPQIAPASAGELLPAATAVSLPTGPATQQMRERLSERTGVSPASPFGDTNTG 857

Query: 499 SLHQEP 516
           +L  +P
Sbjct: 858 ALPADP 863

>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking|
            family 7)
          Length = 5327

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 508  GEVSQDLLDTQVNPAVWEISGHIVLKRRTDFEEASEASAWRLLAEVSLSE 359
            G  S+D++  + +     ISG  VL+   +FEE  E SA R L    L +
Sbjct: 1861 GSFSEDVISHKGDLRFVTISGQKVLETENNFEEGQEPSATRNLVNEKLKD 1910

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +1

Query: 322  PGRCMPSPPQIAPLTETPLREASRPMLLKPP----RSPSSVSEQCVH*SPILQGSPACPA 489
            P   +P PP  A    TPL  A  P +   P     + SS++      + + QG+PA P 
Sbjct: 1594 PPHPLPDPPSPA----TPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPG 1649

Query: 490  DP 495
            DP
Sbjct: 1650 DP 1651

>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 494 GSAGHAGEPCSMGDQWTHCSETEDGLRGGFRSIGLEASRRGVSVRG 357
           G  G AGEP   G+Q    SE + G +G    +GL  ++  V   G
Sbjct: 662 GDRGSAGEPGPKGEQGAPGSEGDAGEKGDLGDMGLPGAKGSVGNPG 707

>POLG_YEFV2 (P19901) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3411

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 440  CSETEDGLRGGFRSIGLEASRRGVSV 363
            C   EDG+ G F+S  L AS+RGV V
Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526

>POLG_YEFV1 (P03314) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3411

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 440  CSETEDGLRGGFRSIGLEASRRGVSV 363
            C   EDG+ G F+S  L AS+RGV V
Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,698,760
Number of Sequences: 219361
Number of extensions: 1722000
Number of successful extensions: 5466
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5443
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)