ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36p04 |
|---|---|
| Clone Library Name | barley_pub |
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +2 Query: 59 SGTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDGA 169 +G I PP G P P + PP R+GLP DGA Sbjct: 407 AGLIGPPGIQGNPGPVGD-PGERGPPGRAGLPGSDGA 442
>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A| (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and leucine-rich repeat protein 11) Length = 1146 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = +2 Query: 92 KPTSREP*PAKTAPPPRSGLPDG----DGAHRRRVGC 190 +P SR TAPP SG P G GA RRRV C Sbjct: 560 RPASRH----STAPPRTSGTPSGTTASSGARRRRVRC 592
>YDBH_ECOLI (P52645) Hypothetical protein ydbH| Length = 879 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +1 Query: 28 MLYNTFIKQNKWYYFSPFREWQANIARTLTS 120 ML NT+I +K FSP++EWQ ++ LTS Sbjct: 121 MLPNTWINIDK-LIFSPWQEWQGKLSLALTS 150
>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC| 3.1.3.48) (Protein tyrosine phosphatase PTP-BL) (Protein-tyrosine phosphatase RIP) (protein tyrosine phosphatase DPZPTP) (PTP36) Length = 2453 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 75 PLSRVASQHRENPNQQRRPHLRGQGFPTATALTGD 179 PLSR +S+ + + +Q R LRG+G PT + T D Sbjct: 185 PLSR-SSEQKPDRSQAIRDRLRGKGLPTGRSSTSD 218
>PE2R4_HUMAN (P35408) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4| receptor) (PGE receptor, EP4 subtype) Length = 488 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 355 EASTTVLRFFSFIGAGVICTKAINMYL 275 E ST +L FFS G +IC ++ YL Sbjct: 93 EYSTFILLFFSLSGLSIICAMSVERYL 119
>PE2R4_PANTR (Q95KZ0) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4| receptor) (PGE receptor, EP4 subtype) Length = 490 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 355 EASTTVLRFFSFIGAGVICTKAINMYL 275 E ST +L FFS G +IC ++ YL Sbjct: 93 EYSTFILLFFSLSGLSIICAMSVERYL 119
>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3163 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 118 WLGFSRCWLATRERGKNSTTYSVL 47 W GF RC+LA R + T YS L Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393
>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)| Length = 559 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 98 TSREP*PAKTAPPPRSGLPDGDGA 169 TS+ P P PPP+ GLPD A Sbjct: 227 TSKSPSPLLPPPPPKRGLPDTGSA 250
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 74 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 166 PP +G PT + P + PP R GLP DG Sbjct: 484 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 513
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 74 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 166 PP +G PT + P + PP R GLP DG Sbjct: 484 PPGTTG-PTGQVGDPGERGPPGRPGLPGADG 513
>ODP2_PSEAE (Q59638) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 547 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +2 Query: 77 PFASGKPTSREP*PAKTAPPPRSGLPDGDGA 169 P A KP + P PAK P G P DGA Sbjct: 215 PAAEQKPAAAAPAPAKADTPAPVGAPSRDGA 245
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 59 SGTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDG 166 +G + PP G PT P + PP R GLP DG Sbjct: 217 AGLMGPPGLQG-PTGPPGDPGERGPPGRPGLPGADG 251
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 74 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 166 PP +G PT + P + PP R GLP DG Sbjct: 482 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 511
>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3164 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 118 WLGFSRCWLATRERGKNSTTYSVL 47 W GF RC+LA R + T YS L Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,947,511 Number of Sequences: 219361 Number of extensions: 653357 Number of successful extensions: 2338 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2331 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
