ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36p02 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 100 bits (248), Expect = 4e-21 Identities = 44/50 (88%), Positives = 50/50 (100%) Frame = -2 Query: 610 GHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVKR 461 GHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAFYEEEV+R Sbjct: 251 GHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300 Score = 98.2 bits (243), Expect = 2e-20 Identities = 49/80 (61%), Positives = 61/80 (76%) Frame = -3 Query: 546 PHTSLFLQRYHMGKVRCWTRPSMRRK*RGLRLSFEQQFHYAVFFAYMRLREQEIRNLMWI 367 P+ ++F + G+ + + + R L L+FEQQFHYAVFFAYMRLREQEIRNLMWI Sbjct: 273 PYQAIF-SKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWI 331 Query: 366 SECVAQNQKNRVHDSVVTIF 307 SECVAQNQK+R+HDSVV +F Sbjct: 332 SECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 100 bits (248), Expect = 4e-21 Identities = 44/50 (88%), Positives = 50/50 (100%) Frame = -2 Query: 610 GHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEVKR 461 GHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAFYEEEV+R Sbjct: 251 GHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRR 300 Score = 98.2 bits (243), Expect = 2e-20 Identities = 49/80 (61%), Positives = 61/80 (76%) Frame = -3 Query: 546 PHTSLFLQRYHMGKVRCWTRPSMRRK*RGLRLSFEQQFHYAVFFAYMRLREQEIRNLMWI 367 P+ ++F + G+ + + + R L L+FEQQFHYAVFFAYMRLREQEIRNLMWI Sbjct: 273 PYQAIF-SKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWI 331 Query: 366 SECVAQNQKNRVHDSVVTIF 307 SECVAQNQK+R+HDSVV +F Sbjct: 332 SECVAQNQKSRIHDSVVYMF 351
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 64.7 bits (156), Expect(2) = 2e-16 Identities = 24/46 (52%), Positives = 39/46 (84%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 319 R++FE Q+ Y VF+AY++LREQEIRN++WI+EC++QN K +++ + Sbjct: 308 RMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYI 353 Score = 40.0 bits (92), Expect(2) = 2e-16 Identities = 19/48 (39%), Positives = 29/48 (60%) Frame = -2 Query: 610 GHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFYEEEV 467 G +L EDVDQVRG++E Y Y++ F+ + L+ +F+E EV Sbjct: 258 GTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEV 304
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 65.1 bits (157), Expect = 2e-10 Identities = 25/41 (60%), Positives = 37/41 (90%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 334 +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 295 KLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 63.9 bits (154), Expect = 3e-10 Identities = 24/46 (52%), Positives = 40/46 (86%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 319 +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK R+++ + Sbjct: 316 KMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERINNYI 361
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 61.2 bits (147), Expect = 2e-09 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = -3 Query: 450 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +F QQFH+ VF++Y++L+EQE RN++WISECVAQ + ++ D+ + IF Sbjct: 302 AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 348
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 61.2 bits (147), Expect = 2e-09 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = -3 Query: 450 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +F QQFH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ D+ + IF Sbjct: 304 AFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 59.3 bits (142), Expect = 9e-09 Identities = 23/50 (46%), Positives = 40/50 (80%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 303 KLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 59.3 bits (142), Expect = 9e-09 Identities = 23/50 (46%), Positives = 40/50 (80%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 303 KLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 59.3 bits (142), Expect = 9e-09 Identities = 23/50 (46%), Positives = 40/50 (80%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 303 KLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 59.3 bits (142), Expect = 9e-09 Identities = 23/50 (46%), Positives = 40/50 (80%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 307 +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 303 KLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 56.2 bits (134), Expect = 7e-08 Identities = 18/41 (43%), Positives = 36/41 (87%) Frame = -3 Query: 450 SFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 328 +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 302 TFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 54.7 bits (130), Expect = 2e-07 Identities = 21/46 (45%), Positives = 36/46 (78%) Frame = -3 Query: 456 RLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 319 R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R+++ + Sbjct: 297 RDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYI 342
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +1 Query: 223 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHDAVMDPVLLVLGNAFGDPHQVPYLLLS* 402 + +++A A+++ L+Y+ G LK ++V V V+G + H VP +L Sbjct: 26 QFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKY 85 Query: 403 PHVRKENSIVEL 438 + + S+ EL Sbjct: 86 MDQKVDMSVTEL 97
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 29.6 bits (65), Expect = 7.2 Identities = 25/93 (26%), Positives = 37/93 (39%) Frame = +1 Query: 43 HFTLPQTAQIVPPTTEINIIYLVYRTTAPFILLQKQIMIHYSSSSFSAA*KIGTRGITNH 222 H T P + P TE + TT PF+++Q ++ SS S +A Sbjct: 201 HVTEPVPKEKSPQDTEPGKVICESETTTPFLIMQ-EVENALSSGSIAAI----------- 248 Query: 223 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHD 321 + A+ + A HS+ GRL D HD Sbjct: 249 TVTVIAVVLLVFGAAAYLKIRHSSYGRLLDDHD 281
>OGG1_SULSO (Q97ZK2) Probable N-glycosylase/DNA lyase [Includes: 8-oxoguanine| DNA glycosylase (EC 3.2.2.-); DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (AP lyase)] Length = 207 Score = 29.3 bits (64), Expect = 9.5 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 21 TAFDSWVSFYIATNCTNSATHYGNKHHLFSLPYNCAFYF 137 TA S++S Y A NC +Y N+ + ++ +C + F Sbjct: 43 TANSSFISAYQALNCLGQKIYYANEEEIRNILKSCKYRF 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,175,229 Number of Sequences: 219361 Number of extensions: 2028223 Number of successful extensions: 5274 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5265 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
