ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36p02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predic... 317 2e-83
2dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 2e-83
3gb|AY104603.1| Zea mays PCO113315 mRNA sequence 254 3e-64
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP ... 98 4e-17
7gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosph... 98 4e-17
8gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosph... 98 4e-17
9gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 4e-17
10gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 4e-17
11gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710... 98 4e-17
12gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete s... 98 4e-17
13dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 94 6e-16
14ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP ... 92 3e-15
15gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence 92 3e-15
16gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) ... 92 3e-15
17gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, comple... 92 3e-15
18gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 m... 92 3e-15
19gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induc... 86 2e-13
20gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 80 1e-11
21gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 74 6e-10
22gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 74 6e-10
23gb|AC157893.2| Medicago truncatula chromosome 7 BAC clone mth2-7... 66 1e-07
24gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome... 44 0.53
25gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complet... 44 0.53
26emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chrom... 44 0.53
27gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosom... 42 2.1
28emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O... 42 2.1
29gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosom... 42 2.1
30gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q2... 42 2.1
31gb|AC010260.7| Homo sapiens chromosome 5 clone CTC-458I2, comple... 42 2.1
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
33gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
34emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial se... 42 2.1
35dbj|D00313.1|YS2PEP1 Saccharomycopsis fibuligera PEP1 gene for p... 42 2.1
36gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete... 40 8.3
37ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 8.3
38gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete s... 40 8.3
39gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete se... 40 8.3
40gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 40 8.3
41ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 40 8.3
42ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 8.3
43ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 8.3
44gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.3
45gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 40 8.3
46gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome... 40 8.3
47gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Can... 40 8.3
48gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome... 40 8.3
49ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 8.3
50emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on ... 40 8.3
51gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chrom... 40 8.3
52emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on ch... 40 8.3
53emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on ch... 40 8.3
54gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Can... 40 8.3
55gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, compl... 40 8.3
56gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, comple... 40 8.3
57gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 40 8.3
58gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 8.3
59gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, compl... 40 8.3
60emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 i... 40 8.3
61dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
62dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
63gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
64gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H... 40 8.3
65gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D... 40 8.3
66gb|AC079767.7| Homo sapiens BAC clone RP11-196E10 from 2, comple... 40 8.3
67gb|AC069151.6| Homo sapiens BAC clone RP11-236I9 from 2, complet... 40 8.3
68dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
69dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
70dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.3
71emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 8.3
72emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in... 40 8.3
73gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-... 40 8.3
74gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short ... 40 8.3
75emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 40 8.3
76gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, compl... 40 8.3 
>ref|NM_192544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  317 bits (160), Expect = 2e-83
 Identities = 260/292 (89%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                        
Query: 320  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 379
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1040 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 981

                                                                        
Query: 380  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 980  ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 921

                                                                        
Query: 440  tgttcgaatgacaggcgcagccctctttacttcctcctcatagaaggccttgtccaacat 499
            ||||| ||||||| || ||||| ||   ||||||||||||||||||||||| ||||||||
Sbjct: 920  tgttcaaatgacaagcacagcc-tccgcacttcctcctcatagaaggccttatccaacat 862

                                                                        
Query: 500  ctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccat 559
             || ||||||||||| || || || |||||||||| ||||||||| ||||||||||||||
Sbjct: 861  ttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccat 802

                                                                
Query: 560  tacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 611
            ||||||||| ||||| |||||||||||||| |||||||  ||||||||||||
Sbjct: 801  tacaccacggacctgatcaacatcttcacaaacagccagttcttcatgacca 750
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>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full
            insert sequence
          Length = 1556

 Score =  317 bits (160), Expect = 2e-83
 Identities = 260/292 (89%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                        
Query: 320  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 379
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1156 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 1097

                                                                        
Query: 380  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1096 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 1037

                                                                        
Query: 440  tgttcgaatgacaggcgcagccctctttacttcctcctcatagaaggccttgtccaacat 499
            ||||| ||||||| || ||||| ||   ||||||||||||||||||||||| ||||||||
Sbjct: 1036 tgttcaaatgacaagcacagcc-tccgcacttcctcctcatagaaggccttatccaacat 978

                                                                        
Query: 500  ctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccat 559
             || ||||||||||| || || || |||||||||| ||||||||| ||||||||||||||
Sbjct: 977  ttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccat 918

                                                                
Query: 560  tacaccacgcacctggtcaacatcttcacagacagccaactcttcatgacca 611
            ||||||||| ||||| |||||||||||||| |||||||  ||||||||||||
Sbjct: 917  tacaccacggacctgatcaacatcttcacaaacagccagttcttcatgacca 866



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 243  cgattgtgccatcatcaaagcgggccttttgtacagccat 282
            ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 1233 cgattgtgccatcatcaaacctggcattttgtacaaccat 1194
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>gb|AY104603.1| Zea mays PCO113315 mRNA sequence
          Length = 1601

 Score =  254 bits (128), Expect = 3e-64
 Identities = 249/288 (86%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||||||||||| |  |||||||||||| || || ||||| ||||||||||||
Sbjct: 1259 acgacactgtcatggacccgggacttctggttctgagcgacacattcagagatccacatc 1200

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 1199 aggttcctgatctcctgctcgcggagcctgatgtaagcgaagaaaacagcgtagtggaac 1140

                                                                        
Query: 437  tgctgttcgaatgacaggcgcagccctctttacttcctcctcatagaaggccttgtccaa 496
            ||||| || || |||| ||  |||| |||| |||||||||||||| || ||||| |||||
Sbjct: 1139 tgctgctcaaaggacaagcatagcc-tcttgacttcctcctcataaaatgccttatccaa 1081

                                                                        
Query: 497  catctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctc 556
            |||||||||||| |||||||| ||| | | ||| |||||||||||||| |||||||||||
Sbjct: 1080 catctgactttctccatatgaaatcctggaaaatatagactggtatggtgggtacttctc 1021

                                                            
Query: 557  cattacaccacgcacctggtcaacatcttcacagacagccaactcttc 604
            |||| ||||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 1020 cattgcaccacgaacctggtcaacatcttcacaaacggccaattcttc 973



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 243  cgattgtgccatcatcaaagcgggccttttgtaca 277
            ||||||||||||||||||||| ||| |||||||||
Sbjct: 1330 cgattgtgccatcatcaaagcaggcattttgtaca 1296
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                            
Query: 320      acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 379
                |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 22852025 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 22852084

                                                                            
Query: 380      ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
                ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 22852085 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 22852144



 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                            
Query: 468      acttcctcctcatagaaggccttgtccaacatctgactttccccatatgatatctttgca 527
                ||||||||||||||||||||||| |||||||| || ||||||||||| || || || |||
Sbjct: 22852717 acttcctcctcatagaaggccttatccaacatttggctttccccatacgaaattttggca 22852776

                                                              
Query: 528      aaaatagactggtatggggggtacttctccattacaccacgcacct 573
                ||||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct: 22852777 aaaatagcctggtatggagggtacttctccattacaccacggacct 22852822



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 570      acctggtcaacatcttcacagacagccaactcttcatgacca 611
                ||||| |||||||||||||| |||||||  ||||||||||||
Sbjct: 22853737 acctgatcaacatcttcacaaacagccagttcttcatgacca 22853778



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 243      cgattgtgccatcatcaaagcgggccttttgtacagccat 282
                ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 22851948 cgattgtgccatcatcaaacctggcattttgtacaaccat 22851987
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                         
Query: 320   acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 379
             |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 55582 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 55641

                                                                         
Query: 380   ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
             ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 55642 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 55701



 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                         
Query: 468   acttcctcctcatagaaggccttgtccaacatctgactttccccatatgatatctttgca 527
             ||||||||||||||||||||||| |||||||| || ||||||||||| || || || |||
Sbjct: 56274 acttcctcctcatagaaggccttatccaacatttggctttccccatacgaaattttggca 56333

                                                           
Query: 528   aaaatagactggtatggggggtacttctccattacaccacgcacct 573
             ||||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct: 56334 aaaatagcctggtatggagggtacttctccattacaccacggacct 56379



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 570   acctggtcaacatcttcacagacagccaactcttcatgacca 611
             ||||| |||||||||||||| |||||||  ||||||||||||
Sbjct: 57294 acctgatcaacatcttcacaaacagccagttcttcatgacca 57335



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 243   cgattgtgccatcatcaaagcgggccttttgtacagccat 282
             ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 55505 cgattgtgccatcatcaaacctggcattttgtacaaccat 55544
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>ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28710 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 437  tgctg 441
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1087

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 437  tgctg 441
            |||||
Sbjct: 923  tgctg 919
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>gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1421

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 437  tgctg 441
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1056

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 437  tgctg 441
            |||||
Sbjct: 923  tgctg 919
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>gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 437  tgctg 441
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710/MZN14_20) mRNA, complete
            cds
          Length = 1400

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 437  tgctg 441
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete sequence
          Length = 1363

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 317  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1122 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1063

                                                                        
Query: 377  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1062 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1003

                 
Query: 437  tgctg 441
            |||||
Sbjct: 1002 tgctg 998
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>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
          Length = 82890

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                         
Query: 317   acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 376
             ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 75724 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 75783

                                                                         
Query: 377   aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 436
             | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 75784 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 75843

                
Query: 437   tgc 439
             |||
Sbjct: 75844 tgc 75846



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 340   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
             |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 82881 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 82822

                                                     
Query: 400   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
              | |||||| ||||||||||| || || || |||||||||
Sbjct: 82821 caacctcatatacgcaaagaataccgcgtaatggaactgc 82782
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>ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28715 mRNA, complete cds
          Length = 1056

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 340  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 400  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 441
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
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>gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence
          Length = 1534

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 215/270 (79%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                        
Query: 320  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 379
            |||||||||||||| ||| | || |||||||| |  || ||||| || |||||||| | |
Sbjct: 1140 acgctgtcatggactctggttttttggttctgagagacacattcagaaatccacattagg 1081

                                                                        
Query: 380  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
            |||||||||||||||||||  ||||| || || |  || || ||| ||||||||||||| 
Sbjct: 1080 ttccttatctcctgctctctcagccttatatatgagaaaaatacaccatagtggaactgt 1021

                                                                        
Query: 440  tgttcgaatgacaggcgcagccctctttacttcctcctcatagaaggccttgtccaacat 499
            ||||| || || | ||  || | | || |||||||| |||||||| |||||||| | |||
Sbjct: 1020 tgttcaaaagataagcaaaggcgt-ttcacttcctcttcatagaaagccttgtcgagcat 962

                                                                        
Query: 500  ctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttctccat 559
            ||| || ||||||||||| | ||| | ||| || || || || ||||||||||| |||||
Sbjct: 961  ctggctctccccatatgacaacttagaaaatatggattgataaggggggtacttttccat 902

                                          
Query: 560  tacaccacgcacctggtcaacatcttcaca 589
             ||||| || ||||| || | |||||||||
Sbjct: 901  gacaccgcggacctgatctatatcttcaca 872
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>gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) mRNA, complete cds
          Length = 1207

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 340  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 400  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 441
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
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>gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1422

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 340  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1105 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1046

                                                      
Query: 400  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 441
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1045 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1004
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>gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 mRNA, complete cds
          Length = 1382

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 340  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1143 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1084

                                                      
Query: 400  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 441
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1083 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1042
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>gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induced mRNA
          Length = 453

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 140/171 (81%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                       
Query: 323 ctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaagttc 382
           |||||||| || |||  |||||| ||||| || |||||||| || |||||||| | ||||
Sbjct: 274 ctgtcatgaactctggacttctgattctgagccacgcattctgaaatccacattaggttc 215

                                                                       
Query: 383 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgctgt 442
           || ||||||||||| | ||||||||| || || ||||| |||||||| |||||||| || 
Sbjct: 214 ctgatctcctgctcccttagcctcatatatgcgaagaacacagcataatggaactgttgc 155

                                                              
Query: 443 tcgaatgacaggcgcagccctctttacttcctcctcatagaaggccttgtc 493
           || || | || ||  || |||||| || |||||||||||||| ||||||||
Sbjct: 154 tcaaacgccaagcaaag-cctcttcacctcctcctcatagaatgccttgtc 105
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                         
Query: 340   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 399
             |||||| ||||| ||||| ||||| || |||||||||| |||||| ||||||||||| | 
Sbjct: 96226 cttctgattctgcgcaacacattccgatatccacatcaggttcctgatctcctgctccct 96285

                                                     
Query: 400   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
              | ||||||||| |||||||| || || ||||||||||||
Sbjct: 96286 caacctcatgtaagcaaagaacaccgcgtagtggaactgc 96325



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 537   tggtatggggggtacttctccattacaccacgcacct 573
             ||||| || |||||||||||||| |||||||| ||||
Sbjct: 96512 tggtaaggagggtacttctccatcacaccacgaacct 96548
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                          
Query: 461    cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 520
              |||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| 
Sbjct: 129740 cctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgataa 129799

                                                                   
Query: 521    ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 573
              ||| ||||| ||||| || || || ||||| || ||||| ||| |||| ||||
Sbjct: 129800 cttcgcaaagatagattgataaggagggtatttttccataacagcacgaacct 129852



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 383    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 129526 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 129582
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>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence
          Length = 124443

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Minus

                                                                          
Query: 461    cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 520
              |||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| 
Sbjct: 115553 cctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgataa 115494

                                                                   
Query: 521    ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 573
              ||| ||||| ||||| || || || ||||| || ||||| ||| |||| ||||
Sbjct: 115493 cttcgcaaagatagattgataaggagggtatttttccataacagcacgaacct 115441



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                         
Query: 461   cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 520
             |||||| ||||||||||||||||| |||||||| | |||||| || |||||||| |||| 
Sbjct: 89918 cctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgataa 89859

                            
Query: 521   ctttgcaaaaataga 535
             ||| ||||| |||||
Sbjct: 89858 cttcgcaaagataga 89844



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 383   cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
             |||||||||||||| | || |||||| || |||||||||||||||||||| ||||||
Sbjct: 90132 cttatctcctgctcccttaacctcatatatgcaaagaaaacagcatagtgaaactgc 90076



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 383    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 115767 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 115711



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 386   atctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 439
             ||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 50598 atctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 50545



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 91/113 (80%)
 Strand = Plus / Minus

                                                                         
Query: 461   cctctttacttcctcctcatagaaggccttgtccaacatctgactttccccatatgatat 520
             |||||| || || ||||||||||| |||||||| | |||||| || || ||||| |||| 
Sbjct: 50387 cctcttgacctcttcctcatagaatgccttgtcaagcatctggctctctccatacgataa 50328

                                                                  
Query: 521   ctttgcaaaaatagactggtatggggggtacttctccattacaccacgcacct 573
             ||| ||||| ||||| || || || ||||| || ||||| ||| |||| ||||
Sbjct: 50327 cttcgcaaagatagattgataaggagggtatttttccatgacagcacgaacct 50275
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>gb|AC157893.2| Medicago truncatula chromosome 7 BAC clone mth2-7m13, complete sequence
          Length = 140479

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 471   tcctcctcatagaaggccttgtccaacatctgactttccccatatgatatctttgcaaaa 530
             |||||||| ||||| |||||||| | ||||||||| || |||||||||| ||| ||||||
Sbjct: 64229 tcctcctcctagaatgccttgtcaagcatctgactctctccatatgataacttggcaaaa 64288

                  
Query: 531   ataga 535
             |||||
Sbjct: 64289 ataga 64293
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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 129   ttttattttgctacaaaaacaaataa 154
             ||||||||| ||||||||||||||||
Sbjct: 15585 ttttattttactacaaaaacaaataa 15610
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>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence
          Length = 133624

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 129    ttttattttgctacaaaaacaaataa 154
              ||||||||| ||||||||||||||||
Sbjct: 120438 ttttattttactacaaaaacaaataa 120463
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>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete
              sequence
          Length = 173310

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 129    ttttattttgctacaaaaacaaataa 154
              ||||||||| ||||||||||||||||
Sbjct: 166832 ttttattttactacaaaaacaaataa 166807
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>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence
          Length = 224526

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     tttgattcttgggtgtcattt 47
              |||||||||||||||||||||
Sbjct: 204213 tttgattcttgggtgtcattt 204233
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>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 74974

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aaacatcatttatttagttta 113
             |||||||||||||||||||||
Sbjct: 36992 aaacatcatttatttagttta 36972
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>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete
             sequence
          Length = 184864

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    tttgattcttgggtgtcattt 47
             |||||||||||||||||||||
Sbjct: 97712 tttgattcttgggtgtcattt 97732
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>gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q24.3 , complete sequence
          Length = 152405

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 585    tcacagacagccaactcttca 605
              |||||||||||||||||||||
Sbjct: 111452 tcacagacagccaactcttca 111472
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>gb|AC010260.7| Homo sapiens chromosome 5 clone CTC-458I2, complete sequence
          Length = 150528

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 40    tgtcattttacattgccacaaactgcaca 68
             |||||||||||||||  ||||||||||||
Sbjct: 86728 tgtcattttacattgggacaaactgcaca 86756
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       ataaacatcatttatttagtt 111
                |||||||||||||||||||||
Sbjct: 25932452 ataaacatcatttatttagtt 25932432
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       ataaacatcatttatttagtt 111
                |||||||||||||||||||||
Sbjct: 25860628 ataaacatcatttatttagtt 25860608
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>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 61296

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 91    ataaacatcatttatttagtt 111
             |||||||||||||||||||||
Sbjct: 42837 ataaacatcatttatttagtt 42857
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>dbj|D00313.1|YS2PEP1 Saccharomycopsis fibuligera PEP1 gene for putative secretable acid
            protease, complete cds
          Length = 2753

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 481  agaaggccttgtccaacatct 501
            |||||||||||||||||||||
Sbjct: 1687 agaaggccttgtccaacatct 1667
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>gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete sequence
          Length = 123145

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   gccacagcctttgattcttg 37
            ||||||||||||||||||||
Sbjct: 6930 gccacagcctttgattcttg 6911
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>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA
          Length = 6684

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   actgcacaaatagtgccacccact 84
            ||||||| ||||||||||||||||
Sbjct: 1439 actgcaccaatagtgccacccact 1416
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>gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete sequence
          Length = 6281

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ttgctacaaaaacaaataat 155
            ||||||||||||||||||||
Sbjct: 5207 ttgctacaaaaacaaataat 5226
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>gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete sequence
          Length = 5887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ttgctacaaaaacaaataat 155
            ||||||||||||||||||||
Sbjct: 2322 ttgctacaaaaacaaataat 2341
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     actgcacaaatagtgccacccact 84
              ||||||| ||||||||||||||||
Sbjct: 104078 actgcaccaatagtgccacccact 104101
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>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    actgcacaaatagtgccacccact 84
             ||||||| ||||||||||||||||
Sbjct: 53893 actgcaccaatagtgccacccact 53870
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>ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 2,
            mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   actgcacaaatagtgccacccact 84
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 1,
            mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   actgcacaaatagtgccacccact 84
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 132      tattttgctacaaaaacaaataat 155
                |||||||||| |||||||||||||
Sbjct: 20896600 tattttgctaaaaaaacaaataat 20896577
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>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    attttgctacaaaaacaaat 152
              ||||||||||||||||||||
Sbjct: 333714 attttgctacaaaaacaaat 333695
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>gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome 3, complete sequence
          Length = 200490

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   acatctgactttccccatat 515
             ||||||||||||||||||||
Sbjct: 46333 acatctgactttccccatat 46352
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>gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   catagaaaataggaacaagg 207
             ||||||||||||||||||||
Sbjct: 41380 catagaaaataggaacaagg 41399
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>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence
          Length = 181208

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    acatctgactttccccatat 515
              ||||||||||||||||||||
Sbjct: 164976 acatctgactttccccatat 164995
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>ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (90.t00024) partial mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 191 agaaaataggaacaaggggaataacaaa 218
           ||||||||||||||| || |||||||||
Sbjct: 269 agaaaataggaacaatggtaataacaaa 296
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>emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on chromosome Xq24-25 Contains
             part of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, complete sequence
          Length = 126474

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    ggaaataaacatcatttatttagt 110
             |||||||||||||| |||||||||
Sbjct: 29309 ggaaataaacatcaattatttagt 29286
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>gb|AC183832.3| Pan troglodytes BAC clone CH251-260G12 from chromosome 7, complete
             sequence
          Length = 179012

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   atagaaggccttgtccaaca 498
             ||||||||||||||||||||
Sbjct: 26478 atagaaggccttgtccaaca 26497
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>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a
             novel gene and a TAR DNA binding protein (TARDBP)
             pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2
             CpG islands, complete sequence
          Length = 226860

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   aacagcatagtggaactgct 440
             ||||||||||||||||||||
Sbjct: 30727 aacagcatagtggaactgct 30746
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>emb|AL844182.10| Mouse DNA sequence from clone RP23-399H17 on chromosome 4, complete
             sequence
          Length = 201590

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 570   acctggtcaacatcttcaca 589
             ||||||||||||||||||||
Sbjct: 97372 acctggtcaacatcttcaca 97353
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>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     aacatcatttatttagttta 113
              ||||||||||||||||||||
Sbjct: 119176 aacatcatttatttagttta 119195
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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   ctacaaaaacaaataatgat 158
             ||||||||||||||||||||
Sbjct: 47263 ctacaaaaacaaataatgat 47244
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>gb|AC091799.5| Homo sapiens BAC clone RP11-416N13 from 7, complete sequence
          Length = 48680

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   atagaaggccttgtccaaca 498
             ||||||||||||||||||||
Sbjct: 22696 atagaaggccttgtccaaca 22677
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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    gatatctttgcaaaaataga 535
              ||||||||||||||||||||
Sbjct: 171660 gatatctttgcaaaaataga 171679
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     agcttttcagccgcatagaa 194
               ||||||||||||||||||||
Sbjct: 1463892 agcttttcagccgcatagaa 1463873
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>gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, complete sequence
          Length = 135503

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ataaacatcatttatttagt 110
             ||||||||||||||||||||
Sbjct: 68625 ataaacatcatttatttagt 68606
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>emb|BX248304.8| Zebrafish DNA sequence from clone CH211-196K22 in linkage group 14,
              complete sequence
          Length = 218178

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ggtgtcattttacattgcca 57
              ||||||||||||||||||||
Sbjct: 102120 ggtgtcattttacattgcca 102101
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      cgccttttattttgctacaa 144
                ||||||||||||||||||||
Sbjct: 13032605 cgccttttattttgctacaa 13032586
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 132      tattttgctacaaaaacaaataat 155
                |||||||||| |||||||||||||
Sbjct: 20889629 tattttgctaaaaaaacaaataat 20889606
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   tattttgctacaaaaacaaataat 155
             |||||||||| |||||||||||||
Sbjct: 25912 tattttgctaaaaaaacaaataat 25935
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>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence
          Length = 217615

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    ggccttgtccaacatctgac 504
              ||||||||||||||||||||
Sbjct: 116163 ggccttgtccaacatctgac 116144
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>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence
          Length = 170528

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   ggccttgtccaacatctgac 504
             ||||||||||||||||||||
Sbjct: 40039 ggccttgtccaacatctgac 40020
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>gb|AC079767.7| Homo sapiens BAC clone RP11-196E10 from 2, complete sequence
          Length = 90906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 42    tcattttacattgccacaaactgcacaa 69
             |||||||||||| |||| ||||||||||
Sbjct: 80055 tcattttacattcccacgaactgcacaa 80082
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>gb|AC069151.6| Homo sapiens BAC clone RP11-236I9 from 2, complete sequence
          Length = 37694

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   atagaaggccttgtccaaca 498
             ||||||||||||||||||||
Sbjct: 31698 atagaaggccttgtccaaca 31717
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   cgccttttattttgctacaa 144
             ||||||||||||||||||||
Sbjct: 71406 cgccttttattttgctacaa 71387
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>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0577H07
          Length = 126757

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    cgccttttattttgctacaa 144
              ||||||||||||||||||||
Sbjct: 114982 cgccttttattttgctacaa 114963
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>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2
          Length = 70952

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tttgtacagccatatgcaca 289
             ||||||||||||||||||||
Sbjct: 66000 tttgtacagccatatgcaca 66019
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   ttattttgctacaaaaacaaataa 154
             ||||||||| ||||||||||||||
Sbjct: 81817 ttattttgcaacaaaaacaaataa 81794
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>emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in linkage group 18,
             complete sequence
          Length = 139084

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   ttattttgctacaaaaacaaataa 154
             ||||||||| ||||||||||||||
Sbjct: 17281 ttattttgcaacaaaaacaaataa 17258
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>gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-alpha1) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   actgcacaaatagtgccacccact 84
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short form protein (PCDH-alpha1)
            variable region sequence, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   actgcacaaatagtgccacccact 84
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
             sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   catggaccctgttcttctgg 346
             ||||||||||||||||||||
Sbjct: 91184 catggaccctgttcttctgg 91203
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>gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, complete sequence
          Length = 96871

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atggagtaaagagttttgcc 20
             ||||||||||||||||||||
Sbjct: 89794 atggagtaaagagttttgcc 89813


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,641,791
Number of Sequences: 3902068
Number of extensions: 6641791
Number of successful extensions: 118648
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118277
Number of HSP's gapped (non-prelim): 367
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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