ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36o19 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 93.6 bits (231), Expect(2) = 4e-30 Identities = 43/54 (79%), Positives = 52/54 (96%) Frame = -3 Query: 584 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVR 423 S+TVTAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NE++ Sbjct: 305 SNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQ 358 Score = 57.4 bits (137), Expect(2) = 4e-30 Identities = 26/36 (72%), Positives = 31/36 (86%) Frame = -2 Query: 318 VEMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 211 VEM+LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 366 VEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 77.8 bits (190), Expect(2) = 3e-18 Identities = 40/60 (66%), Positives = 47/60 (78%) Frame = -3 Query: 587 FSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHVAL 408 +SDTV+A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHLG L+EV AL Sbjct: 299 YSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGAL 358 Score = 33.1 bits (74), Expect(2) = 3e-18 Identities = 16/27 (59%), Positives = 18/27 (66%) Frame = -2 Query: 315 EMVLKDIGYPVKLGSGVAAAAAYLSNS 235 EM LKD G +KLGSG AAA Y S + Sbjct: 362 EMALKDNGVNLKLGSGTGAAAEYFSKN 388
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 77.4 bits (189), Expect(2) = 1e-16 Identities = 34/53 (64%), Positives = 47/53 (88%) Frame = -3 Query: 584 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEV 426 SDTVTA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNE+ Sbjct: 286 SDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNEL 338 Score = 28.1 bits (61), Expect(2) = 1e-16 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = -2 Query: 315 EMVLKDIGYPVKLGSGVAAAAAYL 244 EM L D G V GSGVAAA++YL Sbjct: 348 EMSLIDNGVKVTPGSGVAAASSYL 371
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 36.6 bits (83), Expect(2) = 0.002 Identities = 17/52 (32%), Positives = 34/52 (65%) Frame = -3 Query: 584 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNE 429 S +TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ Sbjct: 296 SPAITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSD 346 Score = 23.9 bits (50), Expect(2) = 0.002 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -2 Query: 318 VEMVLKDIGYP-VKLGSGVAAAAAYLSN 238 +E+VL ++G+ G+GVAAAA SN Sbjct: 356 LEVVLLELGHENFNSGAGVAAAARVFSN 383
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 38.9 bits (89), Expect = 0.011 Identities = 22/31 (70%), Positives = 23/31 (74%), Gaps = 4/31 (12%) Frame = -3 Query: 536 EIVKHAW---KRYNLSLGLGLNKVA-GKVFR 456 E+ AW RYNLSLGLGLNKVA GKVFR Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR 129
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 38.1 bits (87), Expect = 0.019 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -3 Query: 584 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNE 429 S TVT+ P I+ S+ +YN+ + G +AGK+FRIGH+G E Sbjct: 298 SVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGE 349
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/57 (40%), Positives = 31/57 (54%) Frame = -3 Query: 578 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHVAL 408 TVT V VP D +IV + +R+ + + GL GKV RIG +G N R +V L Sbjct: 342 TVTTVAVPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG-CNATRENVDL 397
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 37.4 bits (85), Expect = 0.032 Identities = 21/65 (32%), Positives = 37/65 (56%) Frame = -3 Query: 584 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHVALE 405 S +TAV P +++ I KR++++L G + + G++FRIGHLG + + A+ Sbjct: 296 SPAITAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVS 354 Query: 404 KLFAI 390 L A+ Sbjct: 355 ALEAV 359
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 37.0 bits (84), Expect = 0.042 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = -3 Query: 578 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHV----- 414 TVT V VP D +IV + +++ + GL GKV RIG LG N R +V Sbjct: 342 TVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG-CNATRENVDRVIQ 400 Query: 413 ALEKLFAICIAN 378 AL++ C N Sbjct: 401 ALQEALQRCSRN 412
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 35.4 bits (80), Expect = 0.12 Identities = 22/55 (40%), Positives = 29/55 (52%) Frame = -3 Query: 578 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHV 414 TVT V VP D +IV + +++ + GL GKV RIG LG N R +V Sbjct: 320 TVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG-CNATRENV 373
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 33.9 bits (76), Expect = 0.36 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 578 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 438 T+T V VP + +IV + +N+ + GL KV RIG LG+ Sbjct: 342 TITTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388
>GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial precursor (EC| 3.5.1.2) (GLS) (L-glutamine amidohydrolase) (K-glutaminase) [Contains: Glutaminase kidney isoform 68 kDa chain; Glutaminase kidney isoform 65 kDa chain] Length = 674 Score = 33.5 bits (75), Expect = 0.47 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 246 GTPPRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKTGKHALVIGDANCKQFL 407 GTPP+ ++ Q PG P AP P A GK + GD KQ L Sbjct: 87 GTPPQQQQQQQQQPGASPPAAPGPKDSPGETDAFGNSEGKEMVAAGDNKVKQGL 140
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 33.5 bits (75), Expect = 0.47 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = -3 Query: 578 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNEVRTHV 414 TVT V+VP +IV + + + + GL A KV RIG LG N R +V Sbjct: 320 TVTTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG-CNATRENV 373
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.80 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 237 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 329 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 237 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 335 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>PAL_SHIFL (P0A914) Peptidoglycan-associated lipoprotein precursor| Length = 173 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = -1 Query: 364 LPVFAAAATSGLPRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSK 203 LPV A AA S DG++G G GG G + E A +Q L + Sbjct: 14 LPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQ 67
>PAL_ECOLI (P0A912) Peptidoglycan-associated lipoprotein precursor| Length = 173 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = -1 Query: 364 LPVFAAAATSGLPRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSK 203 LPV A AA S DG++G G GG G + E A +Q L + Sbjct: 14 LPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQ 67
>PAL_ECO57 (P0A913) Peptidoglycan-associated lipoprotein precursor| Length = 173 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = -1 Query: 364 LPVFAAAATSGLPRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSK 203 LPV A AA S DG++G G GG G + E A +Q L + Sbjct: 14 LPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQ 67
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -3 Query: 575 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 438 VT V +P ID + ++ + + +AGK++RIG +G+ Sbjct: 324 VTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGY 369
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +3 Query: 237 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGN---PEVAAAAKTGKHA 371 ++RGTPP P R P P P+PPR G+ P A A +HA Sbjct: 741 DARGTPPPAPVR---DPPRPQPSPPAPPRVGDPVPPTTAEPADRARHA 785
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 255 PRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKTGK 365 P+ PRR ++PGT+ P SP + + EV A K GK Sbjct: 7292 PKSPRR--STPGTKSPVVLSPRQEHSMEVLIATKRGK 7326
>KLF16_HUMAN (Q9BXK1) Krueppel-like factor 16 (Transcription factor BTEB4)| (Basic transcription element-binding protein 4) (BTE-binding protein 4) (Novel Sp1-like zinc finger transcription factor 2) (Transcription factor NSLP2) Length = 252 Score = 29.6 bits (65), Expect = 6.7 Identities = 21/53 (39%), Positives = 24/53 (45%) Frame = +3 Query: 228 GAWNSRGTPPRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKTGKHALVIGD 386 GA + G R RR ASPGT P P P G AAAA A ++ D Sbjct: 34 GAGPAAGLDVRAARREAASPGTPGPPPPPPAASGPGPGAAAAPHLLAASILAD 86
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +3 Query: 246 GTPPRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKT 359 GTPP QASP P A +PP R +P A+ A T Sbjct: 28 GTPPGRASPAQASPAQASP-AGTPPGRASPAQASPAGT 64
>YL788_MIMIV (Q5UQ07) Putative BTB/POZ domain-containing protein L788| Length = 498 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -3 Query: 440 HLNEVRTHVALEKLFAICIANDQCVLACLCCSCNF--WVASAG 318 +L +RTH K+ ++ ++D ++AC+C + NF W G Sbjct: 326 NLELIRTHKLDNKIISLTCSSDNTLIACVCENWNFNMWSIETG 368
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -1 Query: 328 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 161 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116
>XKR5_PANTR (Q49LS3) XK-related protein 5| Length = 686 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -1 Query: 352 AAAATSGLPRRGGDGAQGHRVPGEAWQRRGGRG 254 AA G P+ G D G + G Q+RGG G Sbjct: 504 AATQGEGTPKEGADAVSGTQGKGTGGQQRGGEG 536
>XKR5_HUMAN (Q6UX68) XK-related protein 5| Length = 686 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -1 Query: 352 AAAATSGLPRRGGDGAQGHRVPGEAWQRRGGRG 254 AA G P+ G D G + G Q+RGG G Sbjct: 504 AATQGEGTPKEGADAVSGTQGKGTGGQQRGGEG 536
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 240 SRGTPPRPPRRCQASPGTRCP*APSPPRRGNPEVA 344 S T P+PP R A+ AP+PP G+P ++ Sbjct: 508 SHQTQPQPPPRPNANESDGSSNAPTPPNEGSPALS 542
>ZFP91_HUMAN (Q96JP5) Zinc finger protein 91 homolog (Zfp-91)| Length = 570 Score = 29.3 bits (64), Expect = 8.8 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +3 Query: 255 PRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKTG 362 PRPP + G AP P++ PE AAA G Sbjct: 8 PRPPEQQDQEGGEAAKAAPEEPQQRPPEAVAAAPAG 43
>CHST2_HUMAN (Q9Y4C5) Carbohydrate sulfotransferase 2 (EC 2.8.2.-)| (N-acetylglucosamine 6-O-sulfotransferase 1) (GlcNAc6ST-1) (Gn6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 2) (GST-2) Length = 530 Score = 29.3 bits (64), Expect = 8.8 Identities = 16/45 (35%), Positives = 17/45 (37%) Frame = +3 Query: 228 GAWNSRGTPPRPPRRCQASPGTRCP*APSPPRRGNPEVAAAAKTG 362 G+W G PP P R A R P P G AAA G Sbjct: 101 GSWGRPGPPPAGPPRAHARLDLRTPYRPPAAAVGAAPAAAAGMAG 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,705,208 Number of Sequences: 219361 Number of extensions: 1582621 Number of successful extensions: 6596 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6548 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
