ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor... 32 1.6
2OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor ... 32 2.0
3Y110_METJA (Q57574) Hypothetical protein MJ0110 31 3.5
4RS7_DEHSC (Q3ZZM7) 30S ribosomal protein S7 31 3.5
5RS7_DEHE1 (Q3Z984) 30S ribosomal protein S7 31 3.5
6PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-s... 30 4.5

>O2T27_HUMAN (Q8NH04) Olfactory receptor 2T27 (Olfactory receptor OR1-67)|
          Length = 317

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 565 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 392
           + P  ++ +V+  +++ +   +    L LTL+   +FL GL+  D+YVA+ N L +   M
Sbjct: 77  IVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPLHYPVLM 136

Query: 391 IQMVLYM 371
            + + ++
Sbjct: 137 SRKICWL 143



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>OR2T1_HUMAN (O43869) Olfactory receptor 2T1 (Olfactory receptor 1-25) (OR1-25)|
           (Olfactory receptor OR1-61)
          Length = 311

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -1

Query: 565 VAPLSIIGRVIKTKSVEYMPFSLS--LTLTLSAIVWFLYGLLIKDKYVALPNILGFTFGM 392
           + P  ++  ++  +++ ++  +    L LTL    +FL GL+  D+YVA+ N L +   M
Sbjct: 76  IVPKMLVNYLLDQRTISFVGCTAQHFLYLTLVGAEFFLLGLMAYDRYVAICNPLRYPVLM 135

Query: 391 IQMVLYM 371
            + V +M
Sbjct: 136 SRRVCWM 142



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>Y110_METJA (Q57574) Hypothetical protein MJ0110|
          Length = 93

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 562 APLSIIGRVIKTKSVEYMPFSLSLTLTLSAIVWFLYGLLIKDKYVALPNILGFTF 398
           A L  + + +K K +  +  +  +T T    +W +YG+L  D  + + NIL   F
Sbjct: 23  ASLPQLIKSLKEKDMSNISLAFVITFTTGLTLWLIYGILRNDYPIIVFNILSLMF 77



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>RS7_DEHSC (Q3ZZM7) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 399 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 506
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110



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>RS7_DEHE1 (Q3Z984) 30S ribosomal protein S7|
          Length = 156

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 399 KVKPRMFGSATY-LSLMSRP*RNQTMALRVSVREREK 506
           +VKPR  G ATY + +  RP R QTMA+R  ++   K
Sbjct: 74  EVKPRRVGGATYQVPIEVRPDRAQTMAMRWIIKAARK 110



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>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 213  SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSLASVATT 350
            S A  V+G +S  E+ S+LP+    T+  +G FH +FP++  V  T
Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTVFLVDRT 1740


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,644,019
Number of Sequences: 219361
Number of extensions: 1182900
Number of successful extensions: 4031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4029
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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