ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36n24 |
|---|---|
| Clone Library Name | barley_pub |
>HKT6_ORYSA (Q6H501) Probable cation transporter HKT6 (OsHKT6)| Length = 530 Score = 231 bits (589), Expect = 1e-60 Identities = 112/147 (76%), Positives = 126/147 (85%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAIFVMLICITE 428 I+VLYT+MMYLPGYTSFLP +D SK EK RKGLLE+WI S +SYLAIFVMLICITE Sbjct: 385 ILVLYTIMMYLPGYTSFLPRHDGEDSKTEKINKRKGLLENWIFSHMSYLAIFVMLICITE 444 Query: 427 REALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEG 248 R+++ TDPLNFNV SILFEVV AYGNVG S+GYSCKRLL D RCKDASYGFAG+WS+ G Sbjct: 445 RDSMATDPLNFNVFSILFEVV-AYGNVGFSVGYSCKRLLNHDARCKDASYGFAGKWSDNG 503 Query: 247 KMILIIVMVFGRLKASNLKGGKAWKLR 167 K ILIIVM+FGRLK N+KGG+AWKLR Sbjct: 504 KAILIIVMLFGRLKTFNMKGGRAWKLR 530
>HKT7_ORYSA (Q7XPF7) Probable cation transporter HKT7 (OsHKT7)| Length = 500 Score = 174 bits (440), Expect = 2e-43 Identities = 89/147 (60%), Positives = 107/147 (72%), Gaps = 1/147 (0%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRK-GLLEDWILSQLSYLAIFVMLICIT 431 I+VL+ +MMYLP YT++ P ++ +KD N+ LLE +LSQLSYL IFV+ ICIT Sbjct: 353 ILVLFVLMMYLPPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLSYLTIFVIAICIT 412 Query: 430 EREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNE 251 ER L DPLNF+VLSI+ EVVSAYGNVG SMGYSC R + D C D GF GRWS+ Sbjct: 413 ERRKLKEDPLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDS 472 Query: 250 GKMILIIVMVFGRLKASNLKGGKAWKL 170 GK+ILI VM FGRLK ++KGGKAWKL Sbjct: 473 GKLILIFVMFFGRLKKFSMKGGKAWKL 499
>HKT4_ORYSA (Q7XPF8) Cation transporter HKT4 (OsHKT4)| Length = 552 Score = 152 bits (385), Expect = 6e-37 Identities = 73/140 (52%), Positives = 103/140 (73%), Gaps = 2/140 (1%) Frame = -2 Query: 604 IVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNR--KGLLEDWILSQLSYLAIFVMLICIT 431 ++L+ V+MYLP SFL D +K+ N + L ++ +++LS LA+F L CIT Sbjct: 413 LLLFAVVMYLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACIT 472 Query: 430 EREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNE 251 ER+++++DPLNFN+ SI+FE++SA+GNVG S+GYSC++LLK D CKDASYGF GRW+ E Sbjct: 473 ERKSISSDPLNFNIFSIVFEIISAFGNVGYSLGYSCQKLLKPDATCKDASYGFVGRWTEE 532 Query: 250 GKMILIIVMVFGRLKASNLK 191 GK+I+I+VM GRLK LK Sbjct: 533 GKLIVILVMFLGRLKEFILK 552
>HKT8_ORYSA (Q3YAF4) Cation transporter HKT8 (OsHKT8)| Length = 554 Score = 152 bits (384), Expect = 7e-37 Identities = 72/151 (47%), Positives = 108/151 (71%), Gaps = 5/151 (3%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRKG-----LLEDWILSQLSYLAIFVML 443 ++VLY VMMYLP YT+F+P D++ + + ++G + + ++S LS LAIF+++ Sbjct: 404 VVVLYVVMMYLPPYTTFVP-VQDKHQQTGAQSGQEGSSSSSIWQKLLMSPLSCLAIFIVV 462 Query: 442 ICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRCKDASYGFAGR 263 ICITER + DP+N++VL+I+ EV+SAYGNVG S GYSC R ++ D C+D GF+G+ Sbjct: 463 ICITERRQIADDPINYSVLNIVVEVISAYGNVGFSTGYSCARQVRPDGSCRDLWVGFSGK 522 Query: 262 WSNEGKMILIIVMVFGRLKASNLKGGKAWKL 170 WS +GK+ L+ VM +GRLK +L GG+AWK+ Sbjct: 523 WSKQGKLTLMAVMFYGRLKKFSLHGGQAWKI 553
>HKT1_ARATH (Q84TI7) Sodium transporter HKT1 (AtHKT1)| Length = 506 Score = 150 bits (378), Expect = 4e-36 Identities = 82/156 (52%), Positives = 104/156 (66%), Gaps = 10/156 (6%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYD---------DRYSKDEKRYNRKGLLEDWILSQLSYLAI 455 I+VL+ +MMYLP YT F+P + D S++ K+ + GL I+SQLS+L I Sbjct: 350 ILVLFILMMYLPPYTLFMPLTEQKTIEKEGGDDDSENGKKVKKSGL----IVSQLSFLTI 405 Query: 454 FVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLK-QDLRCKDASY 278 + LI ITER+ L DP+NFNVL+I EV+SAYGNVG + GYSC+R + D CKDASY Sbjct: 406 CIFLISITERQNLQRDPINFNVLNITLEVISAYGNVGFTTGYSCERRVDISDGGCKDASY 465 Query: 277 GFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWKL 170 GFAGRWS GK +LIIVM +GR K K G+AW L Sbjct: 466 GFAGRWSPMGKFVLIIVMFYGRFKQFTAKSGRAWIL 501
>HKT1_ORYSA (Q6TPH3) Cation transporter HKT1 (OsHKT1) (Ni-OsHKT1) (Po-OsHKT1)| Length = 530 Score = 134 bits (336), Expect = 3e-31 Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 3/149 (2%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRKGLL-EDWILSQLSYLAIFVMLICIT 431 ++VL+ ++MYLP T+F + D + ++K + GL+ ++ SQL+ +++FV++ IT Sbjct: 381 VLVLFIILMYLPPSTTFALSNGDEKTANKKAKRKLGLVVQNLAFSQLACISVFVIVAFIT 440 Query: 430 EREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRL--LKQDLRCKDASYGFAGRWS 257 ER L DPLNF+ L+++FE++SAYGNVGLS GYSC RL L C+D Y +G WS Sbjct: 441 ERSRLRNDPLNFSALNMIFEIISAYGNVGLSTGYSCSRLQKLHPGSICQDKPYSLSGWWS 500 Query: 256 NEGKMILIIVMVFGRLKASNLKGGKAWKL 170 +EGK++L+ VM++GRLKA G+ W+L Sbjct: 501 DEGKLLLVFVMLYGRLKAFTKGTGEYWRL 529
>HKT2_ORYSA (Q93XI5) Cation transporter HKT2 (OsHKT2) (Po-OsHKT2)| Length = 530 Score = 131 bits (329), Expect = 2e-30 Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 3/149 (2%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRKGLL-EDWILSQLSYLAIFVMLICIT 431 ++VL+ ++MYLP T+F + D + ++K + GL+ + SQL+ A+FV++ IT Sbjct: 381 VLVLFIILMYLPPSTTFALSNGDEKTANKKAKRKLGLVVRNLAFSQLACNAVFVIVALIT 440 Query: 430 EREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRL--LKQDLRCKDASYGFAGRWS 257 ER L DPLNF+ L+++FEV+SAYGNVGL+ GYSC RL L C+D Y +G WS Sbjct: 441 ERSRLRNDPLNFSALNMIFEVISAYGNVGLTTGYSCSRLQKLHPGSICQDKPYSLSGWWS 500 Query: 256 NEGKMILIIVMVFGRLKASNLKGGKAWKL 170 +EGK++L+ VM++GRLKA G+ W+L Sbjct: 501 DEGKLLLVSVMLYGRLKAFTKGTGEYWRL 529
>HKT9_ORYSA (Q8L4K5) Probable cation transporter HKT9 (OsHKT9)| Length = 509 Score = 122 bits (307), Expect = 6e-28 Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 12/148 (8%) Frame = -2 Query: 604 IVLYTVMMYLPGYTSFL----------PNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAI 455 +VL+ VMMY P T P DDR SK K L+ S L++ Sbjct: 361 LVLFMVMMYTPSLTKLFSACQDHKQIGPESDDRTSKG------KPFLKTMAFSPLAFNTT 414 Query: 454 FVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQD--LRCKDAS 281 +ML+CITER +++TDPLNF+ +I+FEV+SAYGN+GLS GYSC R L+ + C + Sbjct: 415 VIMLVCITERRSISTDPLNFSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQDGIACHEKP 474 Query: 280 YGFAGRWSNEGKMILIIVMVFGRLKASN 197 Y F+G WS GK+IL++ M++GRL + + Sbjct: 475 YSFSGWWSEPGKLILVLAMLYGRLNSKD 502
>HKT3_ORYSA (Q8L481) Probable cation transporter HKT3 (OsHKT3)| Length = 509 Score = 119 bits (298), Expect = 7e-27 Identities = 63/148 (42%), Positives = 88/148 (59%), Gaps = 12/148 (8%) Frame = -2 Query: 604 IVLYTVMMYLPGYTSFL----------PNYDDRYSKDEKRYNRKGLLEDWILSQLSYLAI 455 +VL+ VMMY P T P DDR SK K L+ S L + Sbjct: 361 LVLFMVMMYTPSLTKLFSACQDHKRIGPESDDRTSKG------KPFLKMMAFSPLGFNTT 414 Query: 454 FVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLL--KQDLRCKDAS 281 +ML+CITER +L+TDPLN + +I+FEV+SAYGN+GLS GYSC R L ++ + C + + Sbjct: 415 VIMLVCITERRSLSTDPLNLSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKA 474 Query: 280 YGFAGRWSNEGKMILIIVMVFGRLKASN 197 Y F+G WS GK+IL++ M+ GRL + + Sbjct: 475 YNFSGWWSEPGKLILVLAMLCGRLNSKD 502
>TRK1_YEAST (P12685) High-affinity potassium transport protein| Length = 1235 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Frame = -2 Query: 508 RKGLLED-WILSQLSYLAIFVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMG 332 RK L D W L +L +F++ IC ++ +P NFN+ +ILFE+VSAYG VGLS+G Sbjct: 1076 RKQLSFDLWFL----FLGLFIICICEGDKIKDVQEP-NFNIFAILFEIVSAYGTVGLSLG 1130 Query: 331 YSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 212 Y D + F+ +++ K+++I +++ G+ Sbjct: 1131 Y------------PDTNQSFSRQFTTLSKLVIIAMLIRGK 1158
>TRK1_SCHPO (P47946) Potassium transport protein 1| Length = 841 Score = 53.9 bits (128), Expect = 4e-07 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 15/147 (10%) Frame = -2 Query: 607 IIVLYTVMMYLPGYTSFLPN-----YDDR----YSKDEKRYNRKGLLEDWILSQLSYLAI 455 ++V Y VMMY+ Y + Y++R Y ++ K L+D + QLSY Sbjct: 663 VLVSYMVMMYISVYPVAINMRNTNVYEERSLGVYRTEDDE--GKSFLKDHLTEQLSYDLW 720 Query: 454 FVML----ICITEREALTTDPLN--FNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRC 293 ++ L ICI E ++ +PL+ F++ ++LFEVVSAYG VGLS G S Sbjct: 721 YIFLGLFIICICEGGKIS-NPLDTDFSIFTVLFEVVSAYGTVGLSTGLS----------- 768 Query: 292 KDASYGFAGRWSNEGKMILIIVMVFGR 212 ++ + R++ K+++I + + GR Sbjct: 769 -SSNCSLSARFTTISKLVIIALELRGR 794
>TRK1_SACBA (P28569) High-affinity potassium transport protein| Length = 1241 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Frame = -2 Query: 472 LSYLAIFVMLICITEREALTT-DPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLR 296 L +L + + +ICI ER+ + NFNV +ILFE+VSAYG VGLS+GY Sbjct: 1089 LWFLFLGLFIICICERDKIKDIQRPNFNVFTILFEIVSAYGTVGLSLGY----------- 1137 Query: 295 CKDASYGFAGRWSNEGKMILIIVMVFGR 212 + + F+ + + K+I+I +++ G+ Sbjct: 1138 -PNTNQSFSRQLTTLSKLIIIAMLIRGK 1164
>TRK2_YEAST (P28584) Low-affinity potassium transport protein| Length = 889 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%) Frame = -2 Query: 520 KRYNRKGLLEDWILSQLS----YLAIFVMLICITE-REALTTDPLNFNVLSILFEVVSAY 356 K+ + K + + QLS YL + + +ICI E R+ + +FNV +ILFEVVSAY Sbjct: 729 KKQSPKSFVGAHLRRQLSFDLWYLFLGLFIICICEGRKIEDVNKPDFNVFAILFEVVSAY 788 Query: 355 GNVGLSMGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGR 212 G VGLS+GY + + + +++ K+++I +++ GR Sbjct: 789 GTVGLSLGY------------PNTNTSLSAQFTVLSKLVIIAMLIRGR 824
>TRK2_SCHPO (Q10065) Potassium transport protein 2| Length = 880 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Frame = -2 Query: 568 YTSFLPNYDDRY----SKDEKRYNRKGLLEDWILSQLS----YLAIFVMLICITEREALT 413 Y + N DD + D RK L D I QLS YL + +I I E L Sbjct: 721 YAADTENDDDNNINNNNNDNNTPKRKNFLMDHIQRQLSHDLWYLFLGYFIITIVEGRRLE 780 Query: 412 TDPL-NFNVLSILFEVVSAYGNVGLSMGY 329 ++ F + +ILFEV+S YG VGLS+GY Sbjct: 781 SEAEPQFTLFAILFEVISGYGTVGLSLGY 809
>NTPJ_ENTHR (P43440) V-type sodium ATP synthase subunit J (EC 3.6.3.14)| (Na(+)-translocating ATPase subunit J) Length = 451 Score = 35.4 bits (80), Expect = 0.13 Identities = 28/88 (31%), Positives = 42/88 (47%) Frame = -2 Query: 472 LSYLAIFVMLICITEREALTTDPLNFNVLSILFEVVSAYGNVGLSMGYSCKRLLKQDLRC 293 LS + +M++ +TE T P + I FEV SA+G VGL+MG L DL Sbjct: 358 LSLCVVAIMVLSVTE-----TIPKTSGIEYIAFEVFSAFGTVGLTMG------LTPDL-- 404 Query: 292 KDASYGFAGRWSNEGKMILIIVMVFGRL 209 + GK+++I +M GR+ Sbjct: 405 -----------TLIGKLVIISLMYIGRV 421
>PQIA_SHIFL (P0AFM1) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.85 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 302 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 177 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>PQIA_ECOLI (P0AFL9) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.85 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 302 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 177 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>PQIA_ECOL6 (P0AFM0) Paraquat-inducible protein A| Length = 417 Score = 32.7 bits (73), Expect = 0.85 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -1 Query: 302 PTLQGCFI-WVCWKMEQRGENDSDHCHGLREA*GVQFEGRKSM 177 PTL+ I W+CW + G+ DS+ H + E V+F GR SM Sbjct: 316 PTLKMIAIAWLCWDAKGHGKRDSERMHLIYEV--VEFVGRWSM 356
>LGT_AZOBR (Q8KSV0) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 268 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Frame = -2 Query: 397 FNVLSILFEVVSAYGNVGLS-----MGYSCKRLLKQDLRCKDASYGFAGRWSNEGKMILI 233 F +L+IL + + G G++ +GY R++ + R DA GF + G+++ + Sbjct: 189 FVLLAILVRMPAVRGRAGMTAGIFFIGYGLSRIIAEFFREPDAQLGFLYAGATMGQLLSV 248 Query: 232 IVMVFG 215 +++FG Sbjct: 249 PMVLFG 254
>UNG2_LISMF (Q720K2) Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG 2)| Length = 224 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -2 Query: 313 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWKLR*HQLCE 149 L DL C+ + G+ RW+++G ++L V+ R +N G+ W++ +++ E Sbjct: 96 LHNDLNCEIPNNGYLIRWADQGVLLLNTVLTV-RAGQANSHRGQGWEILTNRIIE 149
>UNG_BACSU (P39615) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 225 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = -2 Query: 313 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWK 173 L+QD+ C ++G W+ +G ++L V+ R +A++ K GK W+ Sbjct: 97 LQQDIGCSIPNHGSLVSWAKQGVLLLNTVLTVRRGQANSHK-GKGWE 142
>5HT1F_CAVPO (O08890) 5-hydroxytryptamine 1F receptor (5-HT-1F) (Serotonin| receptor 1F) (5-HT1F) Length = 366 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Frame = -1 Query: 425 RSTDHRST*FQCFEHTVRSCKC------IWKRGLVNGLQLQEATQTRPTLQGCFIWVCW 267 +S ST F +TV+S +C W+R ++G + ++A T + G F+ +CW Sbjct: 249 KSLSDPSTDFDKIHNTVKSPRCKLRHEKSWRRQKISGTRERKAATTLGLILGAFV-ICW 306
>UNG2_LISIN (Q92CI1) Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG 2)| Length = 224 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = -2 Query: 313 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWKLR*HQLCE 149 L DL C+ + G+ W+++G ++L V+ R +N G+ W+L +++ E Sbjct: 96 LHNDLNCEIPNNGYLIPWADQGVLLLNTVLTV-RAGQANSHRGQGWELLTNRIIE 149
>UNG_RHIME (Q92LU5) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 241 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = -2 Query: 313 LKQDLRCKDASYGFAGRWSNEGKMILIIVMVFGRLKASNLKGGKAWK 173 L++DL A +GF W+ +G ++L V+ R +A++ + G+ W+ Sbjct: 100 LQEDLGIPPARHGFLESWARQGVLLLNSVLTVERGRAASHQ-GRGWE 145
>HBAD_ALDEL (P83134) Hemoglobin D alpha subunit (Hemoglobin D alpha chain)| Length = 141 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = -2 Query: 598 LYTVMMYLPGYTSFLPNYDDRYSKDEKRYNRK---GLLEDWILSQLSYLAIFVMLICITE 428 L + + P ++ P++D + ++ R++ K G L D + + L+ + + Sbjct: 29 LERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAV-KHIDNLSATLSELSNLH 87 Query: 427 REALTTDPLNFNVLSILFEVV 365 L DP+NF +LS F+VV Sbjct: 88 AYNLRVDPVNFKLLSHCFQVV 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,474,619 Number of Sequences: 219361 Number of extensions: 1766221 Number of successful extensions: 4041 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4027 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
