>YFE2_YEAST (P43560) Hypothetical 76.3 kDa protein in SEC53-FET5 intergenic|
           region
          Length = 674

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +3

Query: 153 YIRKKATYF------STCKVKIYMRRKEEGNFLKYIQGLRNLLQTLLPASSVSTLLRYLL 314
           Y  +KA +F      +TC V   ++RK+   + + I  +R     +    S ST  RYL+
Sbjct: 470 YSYEKALHFPAGPKSTTCYVAEVIKRKDPDTYYEVISSIRT--PNVPSGGSFSTKTRYLI 527

Query: 315 EINFQLSCNLYIS 353
             N +++C L +S
Sbjct: 528 RWNDEITCLLRVS 540

>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +3

Query: 291 STLLRYLLEINFQLSCNLYISST*SSVSQRKEPNAMASSSSLFRDAGSSITASSISVEPI 470
           S+LL     ++ +LS +    S+ S+ S   E  + +SSSS+   + SS   SS S  P 
Sbjct: 90  SSLLTLSSTLSSELSSSSMQVSSSSTSSSSSEVTSSSSSSSISPSSSSSTIISSSSSLPT 149

Query: 471 F---SPKSAQLCFSMRLQASLVRSFAHNSKVFGSKPIM*LFRS*GSTT 605
           F   S  S     ++   +SLV S + ++  F S+    L  S  ST+
Sbjct: 150 FTVASTSSTVASSTLSTSSSLVISTSSSTFTFSSESSSSLISSSISTS 197

>PIG1_YEAST (Q06216) Serine/threonine-protein phosphatase 1 regulatory subunit|
           PIG1
          Length = 648

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +3

Query: 300 LRYLLEINFQLSCNLYISST*SSVSQRKEPNAMASSSSLFRDAGSSIT-ASSISVEPIFS 476
           L+  L++   +S + ++SST S+     E +  ASSS+    +G S+  A+ +     F+
Sbjct: 9   LKPSLKLAKTISTSSFVSSTTSNSFSPLEDSTSASSSTSSSSSGKSVRFAAHLYTVKKFN 68

Query: 477 PKSAQLCFSMRLQASLVRSFAHNS 548
            K A +  S +  ++L R+  +N+
Sbjct: 69  TKLAPISISEKAASNLTRNLHNNA 92

>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 445  PRQSPWSPSFLQRVPSCASR*DYKPR*SAASRITPRSLGRSPSCNSSGHEDQQQN 609
            P  SP SPS+    PS      Y P    + + +PRS   SPS N++  E + +N
Sbjct: 1697 PSYSPTSPSYSPTSPS------YSP---TSPQYSPRSPSYSPSFNNNDKEQKDEN 1742

>USP_BOMMO (P49700) Protein ultraspiracle homolog (RXR type hormone receptor|
           CF1) (BmCF1)
          Length = 462

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 490 WALFGEKMGSTEIDEAVILDPASLKRLLLEAIAFGS--FLWDTEDYVD 353
           WA      G  EID+ ++L   S   LLL AIA+ S  FL D  + VD
Sbjct: 262 WARDIPHFGQLEIDDQILLIKGSWNELLLFAIAWRSMEFLNDERENVD 309

>ENV_HV2BE (P18094) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 860

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -2

Query: 296 CRYGARWKKSLQKIPETL 243
           CR+G RW++++Q++ +TL
Sbjct: 338 CRFGGRWREAMQEVKQTL 355

>ADG3_SCHPO (O74851) Protein adg3 precursor|
          Length = 1131

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +3

Query: 345  YISST*SSVSQRKEPNAMASSSSLFRDAGSSITASSISVEPIFSPKSA 488
            YI+S+ SS +   EP   +SSS+L  ++ SSI  +S++V+P  S  S+
Sbjct: 942  YIASSASSNTLSTEPKTFSSSSTL-SESISSINTNSLTVKPESSLSSS 988


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,332,338
Number of Sequences: 219361
Number of extensions: 1830504
Number of successful extensions: 4891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4885
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)