>ATPG_SPIOL (P05435) ATP synthase gamma chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 364

 Score = 36.2 bits (82), Expect = 0.092
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +2

Query: 59  EIGRLRMLTTHLLSPEKREKILHTMLPLSPLHRCLDIY*QC*D 187
           E+ ++ ML T  +S  K + ++HT+LPLSP     DI  +C D
Sbjct: 206 EVDKVEMLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGKCVD 248

>ATPG_TOBAC (P29790) ATP synthase gamma chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 377

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 59  EIGRLRMLTTHLLSPEKREKILHTMLPLSPLHRCLDIY*QC*D 187
           E+ ++ +L T  +S  K E ++HT+LPLSP     DI   C D
Sbjct: 219 EVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGNCVD 261

>ATPG1_ARATH (Q01908) ATP synthase gamma chain 1, chloroplast precursor (EC|
           3.6.3.14)
          Length = 373

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 59  EIGRLRMLTTHLLSPEKREKILHTMLPLSPLHRCLDIY*QC*D 187
           E+ ++ +L T  +S  K E ++HT+LPLSP     DI   C D
Sbjct: 215 EVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGTCVD 257

>ATPG_PEA (P28552) ATP synthase gamma chain, chloroplast precursor (EC|
           3.6.3.14)
          Length = 376

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 59  EIGRLRMLTTHLLSPEKREKILHTMLPLSPLHRCLDIY*QC*D 187
           E+ ++ +L T  +S  K   I+HT+LPLSP     DI   C D
Sbjct: 216 EVDKVELLYTKFVSLVKSNPIIHTLLPLSPKGEICDINGNCVD 258

>NEDD4_RAT (Q62940) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 887

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 IHWSWKSHMLYEQEQTIHLLSFMKG 346
           IHW WK+ ++ + E+ I LL F+ G
Sbjct: 792 IHWFWKAVLMMDSEKRIRLLQFVTG 816

>GIDB_LEGPH (Q5ZRJ1) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 208

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -3

Query: 272 SGRRVRHCSEVV*E*AKTQLNCKNIQP*HLNIVSRYPNNDGEATVVT 132
           +G+++R  +EV     K QLN KNI+P  + + + +P N G  TV++
Sbjct: 101 NGKKIRFLNEV-----KRQLNIKNIEPIQIRVENYHP-NQGFDTVIS 141

>ATPG2_ARATH (Q01909) ATP synthase gamma chain 2, chloroplast precursor (EC|
           3.6.3.14)
          Length = 386

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  EIGRLRMLTTHLLSPEKREKILHTMLPLSPLHRCLDIY*QC*DVM 193
           E+ ++ ++ T  +S  K + ++HT+LPLS      D+  +C D +
Sbjct: 226 EVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGESCDVKGECVDAI 270

>Y439_PYRHO (O58186) Protein PH0439|
          Length = 255

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = -3

Query: 668 AEITEKLRKEGGYIEDTRFVLHDVSEEEKV--DVLHRHSERLAIAFGLISTRP-----GT 510
           A I ++L ++G ++     V  DV E E    + + R  E L I+ GL  T       G 
Sbjct: 26  AYIAQRLTEKGFWVRRITTVGDDVKEIENAVREAISRKPEVLIISGGLGPTHDDVTMLGV 85

Query: 509 PLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRD 411
              I + L++C DC E  K   +   R+ ++ D
Sbjct: 86  ANAIGRKLKLCEDCLERIKEFYEELHRKGLIDD 118

>RHAB_ENTFA (Q838L3) Rhamnulokinase (EC 2.7.1.5) (Rhamnulose kinase)|
          Length = 494

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 397 WNLLASRTTISL--SNSFDTSLVNSWQSPQTLRFLAILRGV 513
           W+LL   TT++   + +F  +  N W +  T+RFL  + G+
Sbjct: 266 WSLLGIETTVTTISAEAFQENYTNEWGAQNTIRFLKNIMGM 306

>NEDD4_MOUSE (P46935) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-) (Neural|
           precursor cell expressed developmentally down-regulated
           protein 4)
          Length = 887

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 272 IHWSWKSHMLYEQEQTIHLLSFMKG 346
           IHW WK+  + + E+ I LL F+ G
Sbjct: 792 IHWFWKAVWMMDSEKRIRLLQFVTG 816

>YQGM_BACSU (P54490) Putative glycosyl transferase yqgM (EC 2.-.-.-)|
          Length = 359

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 632 YIEDTRFVL--HDVSEEEKVDVLHRHSERLAIAFGLISTRPGTPL 504
           YI D  F +  H +S  ++ D++H H +  A A   +  R G PL
Sbjct: 53  YIADANFTMVRHVLSHNKRFDLIHAHDDTTAPAAQYLKQRLGLPL 97

>Y260_AQUAE (O66619) UPF0090 protein aq_260|
          Length = 158

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 671 LAEITEKLRKEGGYIEDTRFVLHDVSEEEKVDVLH 567
           L E  E  R+  GYIED +  + D+ E+EK  VLH
Sbjct: 108 LKEPIEGKREVVGYIEDVKNGIIDIREKEKGKVLH 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,488,228
Number of Sequences: 219361
Number of extensions: 2046645
Number of successful extensions: 6220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6219
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)