| Clone Name | rbaal36n04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U73217.1|TAU73217 Triticum aestivum cold acclimation protein WCOR615 (Wcor615) mRNA, complete cds Length = 776 Score = 801 bits (404), Expect = 0.0 Identities = 486/512 (94%), Gaps = 1/512 (0%) Strand = Plus / Minus Query: 118 cggtcttcatttggcgctgccggcgtcggctttgtctcctcccatcccgagcgtgttcat 177 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 574 cggtcttcatttggcgctgccgacgtcggctttgtctcctcccatcccgagcgtgttcat 515 Query: 178 gacggcgtccctggcgcccgtagcggcgcccatcacctgcccgccagcctgctggaacat 237 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 514 aacggcgtccctggcgcccgtagcggcacccatcacctgcccgccggcctgctggaacat 455 Query: 238 gttgccggcgggctccttgggggcggcgggttccccggtgaactgcgccgcggtctcctc 297 |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 454 gttgccggtgggctccttgggggcggcgggttccccggtgaacttcgccgcgttctcctc 395 Query: 298 gacacacttcgcggcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccat 357 ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 394 gacgcactttgcggcctcggcggacttctgcttggcggcgtcgccggtgtcggcggccat 335 Query: 358 cttcttggcagcctcggccttctcgccgatgaagccgaacgtctggtctttgctctcgat 417 ||||||||| ||||||| |||||| |||| |||||||||||||||||| ||||||||||| Sbjct: 334 cttcttggcggcctcggtcttctcaccgaagaagccgaacgtctggtccttgctctcgat 275 Query: 418 ggcgcggtccgtgatggcctgccccgtctcggagaccttccccatggcgtctccccccat 477 |||||||||||||||||||||||||||||| || |||||||||||||||| | |||||| Sbjct: 274 ggcgcggtccgtgatggcctgccccgtctctgacgccttccccatggcgtcgctccccat 215 Query: 478 cttcatggccgcatcggcggtgtcggaggccgccttcgtgacggcctcgcttttctcgcc 537 |||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 214 cttcatggccgcgtcggcggtgtctgacgccgccttggtgacggcctcgcttttctcgcc 155 Query: 538 gatgaagctgatggtctggtctttcgcctcgatggcgcggtcctggaccggacggccccg 597 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct: 154 gatgaagctgatggtctggtccttcgcctcgatggcgcggtcctgga-cggacggccccg 96 Query: 598 tcttggcggcctcgtcggccttggcgtccgtc 629 |||||||||||||||||||||||||||||||| Sbjct: 95 tcttggcggcctcgtcggccttggcgtccgtc 64 Score = 54.0 bits (27), Expect = 6e-04 Identities = 37/39 (94%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 41 acaccgacgcatgcgtagaaat-agtttcttggaacgga 78 ||||||||||||||||||| || |||||||||||||||| Sbjct: 674 acaccgacgcatgcgtagagatcagtttcttggaacgga 636
>emb|X79466.1|HVES2A H.vulgare (Dbg 567) ES2A mRNA Length = 793 Score = 172 bits (87), Expect = 9e-40 Identities = 233/279 (83%), Gaps = 2/279 (0%) Strand = Plus / Minus Query: 307 cgcggcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggc 366 ||||||||||| |||||||| ||||||||||||| | || ||| |||| ||||||| | Sbjct: 428 cgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttcttcac 369 Query: 367 agcctcggccttctcgccgatgaagccgaacgtctggtctttgctctcgatggcgcggtc 426 ||||| | ||||||||||| |||| | |||||||||||||| ||||| |||||| || Sbjct: 368 ggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatc 309 Query: 427 cgtgat-ggcctgccccgtctcggagaccttccccatggcgtctccccccatcttcatgg 485 | ||| ||| ||| |||||||||| |||||||||||||| || || |||||||| ||| Sbjct: 308 c-tgaccggcttgcaccgtctcggacaccttccccatggcctcgccgcccatctttttgg 250 Query: 486 ccgcatcggcggtgtcggaggccgccttcgtgacggcctcgcttttctcgccgatgaagc 545 |||| |||| || |||||||| | ||||||||| ||||||||||||||||| | ||||| Sbjct: 249 ccgcctcggtagtctcggaggcagacttcgtgacagcctcgcttttctcgccaaggaagc 190 Query: 546 tgatggtctggtctttcgcctcgatggcgcggtcctgga 584 || |||||||||||| ||||||| ||| |||||||||| Sbjct: 189 tgccggtctggtcttttgcctcgacggcacggtcctgga 151 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 149 ttgtctcctcccatcccgagcgtgttcatgacggcgtccctggcgcccgtagcggcgccc 208 |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| Sbjct: 580 ttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcaccc 521 Query: 209 a 209 | Sbjct: 520 a 520 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 398 gtctggtctttgctctcgatggcgcggtccgtgatggcctgccccgtctcgga 450 ||||||||||| ||||| ||| |||||| ||||| ||||||||||||||| Sbjct: 184 gtctggtcttttgcctcgacggcacggtcctggatggactgccccgtctcgga 132
>gb|AF255053.1|AF255053 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab17) mRNA, complete cds Length = 735 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 149 ttgtctcctcccatcccgagcgtgttcatgacggcgtccctggcgcccgtagcggcgccc 208 |||||||||||||||||||||||||||||||| |||||| ||||| | |||||||| ||| Sbjct: 534 ttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtctgtagcggcaccc 475 Query: 209 atcacctgcccgccagcctgctggaa 234 | || | |||||| ||||||||||| Sbjct: 474 accatattcccgccggcctgctggaa 449 Score = 85.7 bits (43), Expect = 2e-13 Identities = 115/139 (82%) Strand = Plus / Minus Query: 441 ccgtctcggagaccttccccatggcgtctccccccatcttcatggccgcatcggcggtgt 500 |||||||||| ||||||||||||| || || |||||||| | ||||| |||| || | Sbjct: 248 ccgtctcggacgccttccccatggcctcgccgcccatctttttagccgcctcggtagtct 189 Query: 501 cggaggccgccttcgtgacggcctcgcttttctcgccgatgaagctgatggtctggtctt 560 ||||||| ||||||||||| |||||||||||||| || | |||| ||||||||||| Sbjct: 188 cggaggcagccttcgtgacagcctcgcttttctcaccaaggaaggccccggtctggtctt 129 Query: 561 tcgcctcgatggcgcggtc 579 | ||||||| ||||||||| Sbjct: 128 ttgcctcgacggcgcggtc 110
>emb|AJ000100.1|HVAJ100 Hordeum vulgare mRNA for cold-regulated protein, partial Length = 594 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 149 ttgtctcctcccatcccgagcgtgttcatgacggcgtccctggcgcccgtagcggcgccc 208 |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| Sbjct: 364 ttgtctcctcccatcccgagcgtgttcatgacagcgtccttggcgtccgtagcggcaccc 305 Query: 209 a 209 | Sbjct: 304 a 304 Score = 89.7 bits (45), Expect = 1e-14 Identities = 173/213 (81%), Gaps = 2/213 (0%) Strand = Plus / Minus Query: 307 cgcggcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggc 366 ||||||||||| |||||||| ||||||||||||| | || ||| |||| ||||||| | Sbjct: 212 cgcggcctcggtggacttctccttggcggcgtcggcagtctcggtggccgtcttcttcac 153 Query: 367 agcctcggccttctcgccgatgaagccgaacgtctggtctttgctctcgatggcgcggtc 426 ||||| | ||||||||||| |||| | |||||||||||||| ||||| |||||| || Sbjct: 152 ggcctccgtcttctcgccgagaaagctggccgtctggtctttgccctcgacggcgcgatc 93 Query: 427 cgtga-tggcctgccccgtctcggagaccttccccatggcgtctccccccatcttcatgg 485 | ||| ||| ||| |||||||||| |||||||||||||| || | |||||||| ||| Sbjct: 92 c-tgaccggcttgcaccgtctcggacaccttccccatggcctcgctgcccatctttttgg 34 Query: 486 ccgcatcggcggtgtcggaggccgccttcgtga 518 ||| |||| || |||||||| | |||||||| Sbjct: 33 tcgcctcggtagtctcggaggcagacttcgtga 1 Score = 40.1 bits (20), Expect = 8.8 Identities = 74/92 (80%) Strand = Plus / Minus Query: 491 tcggcggtgtcggaggccgccttcgtgacggcctcgcttttctcgccgatgaagctgatg 550 ||||| || |||| ||||| |||| | |||||||| | |||||||||| |||||| Sbjct: 181 tcggcagtctcggtggccgtcttcttcacggcctccgtcttctcgccgagaaagctggcc 122 Query: 551 gtctggtctttcgcctcgatggcgcggtcctg 582 ||||||||||| |||||| |||||| ||||| Sbjct: 121 gtctggtctttgccctcgacggcgcgatcctg 90
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 102388 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 102329 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 102328 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 102286
>ref|XM_475821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 603 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 381 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 322 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 321 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 279
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 3330 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 3271 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 3270 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 3228
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 26721391 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 26721332 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 26721331 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 26721289
>dbj|AK119713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-F03, full insert sequence Length = 968 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 482 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 423 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 422 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 380
>emb|Z68090.1|OSLEA3X1 O.sativa mRNA for group 3 LEA (type I) protein Length = 966 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 463 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 404 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 403 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 361
>dbj|AK063984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D08, full insert sequence Length = 1277 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 576 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 517 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 516 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 474
>gb|U57641.1|OSU57641 Oryza sativa LEA-like protein mRNA, embryo-specific clone Ose730, complete cds Length = 953 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctc 372 |||||||| |||||||||||||||| | |||| ||| ||||| ||| |||||| ||| Sbjct: 448 ctcggcggtcttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctc 389 Query: 373 ggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 || ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 388 ggtcttctcgccgaggaagccgccggtctggtccttgctctcg 346
>gb|AF255052.1|AF255052 Triticum aestivum cold-responsive LEA/RAB-related COR protein (Wrab19) mRNA, complete cds Length = 698 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 322 cttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctcggccttctc 381 |||||||||||| || ||| | || ||| ||||| ||| |||||| ||||| | |||||| Sbjct: 384 cttctgcttggccgcctcggccgtctcggcggccttctgcttggccgcctccgtcttctc 325 Query: 382 gccgatgaagccgaacgtctggtctttgctctcgatggcgcggtcc 427 ||||| ||||| | |||||||| ||||||||| |||||||||| Sbjct: 324 gccgaggaagctgccggtctggtccttgctctcggcggcgcggtcc 279
>gb|AF139915.1|AF139915 Triticum aestivum ABA-inducible protein WRAB1 mRNA, complete cds Length = 698 Score = 60.0 bits (30), Expect = 9e-06 Identities = 87/106 (82%) Strand = Plus / Minus Query: 322 cttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctcggccttctc 381 |||||||||||| || ||| | || ||| ||||| ||| |||||| ||||| | |||||| Sbjct: 384 cttctgcttggccgcctcggccgtctcggcggccttctgcttggccgcctccgtcttctc 325 Query: 382 gccgatgaagccgaacgtctggtctttgctctcgatggcgcggtcc 427 ||||| ||||| | |||||||| ||||||||| |||||||||| Sbjct: 324 gccgaggaagctgccggtctggtccttgctctcggcggcgcggtcc 279
>gb|AF046884.1|AF046884 Oryza sativa group 3 LEA protein (lea) gene, complete cds Length = 3734 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 323 ttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcctcggccttctcg 382 ||||||||||||||| | |||| ||| ||||| ||| |||||| ||||| ||||||| Sbjct: 2795 ttctgcttggcggcgccagcggtctcggcggccttctgcttggcctgctcggtcttctcg 2736 Query: 383 ccgatgaagccgaacgtctggtctttgctctcg 415 |||| ||||||| |||||||| ||||||||| Sbjct: 2735 ccgaggaagccgccggtctggtccttgctctcg 2703
>emb|X13498.1|HVABAIP Barley pHVA1 mRNA for an ABA-inducible protein Length = 997 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 310 ggcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagc 369 ||||||||||| ||||||||||||||| ||| | || ||| ||| | ||| ||||| || Sbjct: 329 ggcctcggcggccttctgcttggcggcctcggccgtctcgccggtcttctgcttggtggc 270 Query: 370 ctcggccttctcgccg 385 ||||||| |||||||| Sbjct: 269 ctcggccgtctcgccg 254 Score = 40.1 bits (20), Expect = 8.8 Identities = 62/76 (81%) Strand = Plus / Minus Query: 311 gcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcc 370 |||||||||| |||||||||||| || || || ||| ||||| ||| |||||| ||| Sbjct: 514 gcctcggcggccttctgcttggccgcctccgtcgtctcggcggccttctgcttggccgcc 455 Query: 371 tcggccttctcgccga 386 || | ||||||||||| Sbjct: 454 tccgtcttctcgccga 439
>emb|X78205.1|HVHVA1 H.vulgare (Himalaya) HVA1 gene Length = 1804 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 310 ggcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagc 369 ||||||||||| ||||||||||||||| ||| | || ||| ||| | ||| ||||| || Sbjct: 808 ggcctcggcggccttctgcttggcggcctcggccgtctcgccggtcttctgcttggtggc 749 Query: 370 ctcggccttctcgccg 385 ||||||| |||||||| Sbjct: 748 ctcggccgtctcgccg 733 Score = 40.1 bits (20), Expect = 8.8 Identities = 62/76 (81%) Strand = Plus / Minus Query: 311 gcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcc 370 |||||||||| |||||||||||| || || || ||| ||||| ||| |||||| ||| Sbjct: 993 gcctcggcggccttctgcttggccgcctccgtcgtctcggcggccttctgcttggccgcc 934 Query: 371 tcggccttctcgccga 386 || | ||||||||||| Sbjct: 933 tccgtcttctcgccga 918
>gb|AY148491.1| Triticum aestivum LEA2 protein (LEA2) mRNA, complete cds Length = 664 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 351 cggccatcttcttggcagcctcggccttctcgccgatgaagccgaacgtctggtctttgc 410 ||||| ||| |||||| ||||| | ||||||||||| ||||| | |||||||| |||| Sbjct: 277 cggccttctgcttggccgcctccgtcttctcgccgaggaagctgcctgtctggtccttgc 218 Query: 411 tctcgatggcgcggtcc 427 ||||| |||||||||| Sbjct: 217 tctcggcggcgcggtcc 201
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Plus Query: 599 cttggcggcctcgtcggccttggc 622 |||||||||||||||||||||||| Sbjct: 3425403 cttggcggcctcgtcggccttggc 3425426
>emb|Z29512.1|ZMLEAMGL3 Z.mays mRNA for group 3 Lea protein MGL3 Length = 1094 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 309 cggcctcggcggacttctgcttggcggc 336 |||||||||||| ||||||||||||||| Sbjct: 606 cggcctcggcggccttctgcttggcggc 579
>dbj|D26552.1|MZEG3LP Zea mays mRNA for group 3 Lea protein MGL3, complete cds Length = 1094 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 309 cggcctcggcggacttctgcttggcggc 336 |||||||||||| ||||||||||||||| Sbjct: 606 cggcctcggcggccttctgcttggcggc 579
>gb|U05226.1|ZMU05226 Zea mays group 3 Lea protein MGL3 mRNA, complete cds Length = 1094 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 309 cggcctcggcggacttctgcttggcggc 336 |||||||||||| ||||||||||||||| Sbjct: 606 cggcctcggcggccttctgcttggcggc 579
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 548 atggtctggtctttcgcctcgatggcg 574 |||||| |||||||||||||||||||| Sbjct: 1823662 atggtcaggtctttcgcctcgatggcg 1823688
>dbj|AB115914.1| Triticum aestivum Wrab18 mRNA for ABA inducible protein, complete cds Length = 852 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 361 cttggcagcctcggccttctcgccgatgaagccgaacgtctggtctttgctctcgatggc 420 |||||| ||||| | ||||||||||| ||||| | |||||||| ||||||||| ||| Sbjct: 346 cttggccgcctccgtcttctcgccgaggaagctgccggtctggtccttgctctcggcggc 287 Query: 421 gcggtcc 427 ||||||| Sbjct: 286 gcggtcc 280
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 599 cttggcggcctcgtcggccttg 620 |||||||||||||||||||||| Sbjct: 2537706 cttggcggcctcgtcggccttg 2537685
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 ctcggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 ||||| ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 495922 ctcggtcttctcgccgaggaagccgctagtctggtccttgctctcg 495967
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 ctcggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 ||||| ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 136123 ctcggtcttctcgccgaggaagccgctagtctggtccttgctctcg 136168
>dbj|AK120074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007J15, full insert sequence Length = 1459 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Minus Query: 370 ctcggccttctcgccgatgaagccgaacgtctggtctttgctctcg 415 ||||| ||||||||||| ||||||| |||||||| ||||||||| Sbjct: 333 ctcggtcttctcgccgaggaagccgctagtctggtccttgctctcg 288
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tggcgctgccggcgtcggctt 149 ||||||||||||||||||||| Sbjct: 4705209 tggcgctgccggcgtcggctt 4705189
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 cgtcgccggtgtcgacggcca 356 ||||||||||||||||||||| Sbjct: 2665874 cgtcgccggtgtcgacggcca 2665894
>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome Length = 335593 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 gccatcttcttggcagcctcg 373 ||||||||||||||||||||| Sbjct: 234264 gccatcttcttggcagcctcg 234244
>ref|XM_482505.1| Oryza sativa (japonica cultivar-group), mRNA Length = 651 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 tggcggcgtcgccggtgtcg 349 |||||||||||||||||||| Sbjct: 341 tggcggcgtcgccggtgtcg 360
>ref|NM_186352.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1817 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ttggcggcgtcgccggtgtc 348 |||||||||||||||||||| Sbjct: 1186 ttggcggcgtcgccggtgtc 1167
>ref|XM_361278.1| Magnaporthe grisea 70-15 hypothetical protein (MG03752.4) partial mRNA Length = 7530 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 602 ggcggcctcgtcggccttggcgtc 625 |||||||||||| ||||||||||| Sbjct: 4020 ggcggcctcgtccgccttggcgtc 3997
>ref|XM_364702.1| Magnaporthe grisea 70-15 hypothetical protein (MG09547.4) partial mRNA Length = 1182 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 cggccttctcgccgatgaag 391 |||||||||||||||||||| Sbjct: 181 cggccttctcgccgatgaag 162
>gb|AE007276.1| Sinorhizobium meliloti 1021 plasmid pSymA section 82 of 121 of the complete plasmid sequence Length = 10029 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gaacatgttgccggcgggct 251 |||||||||||||||||||| Sbjct: 6149 gaacatgttgccggcgggct 6168
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 tcttcttggcagcctcggccttct 380 ||||||| |||||||||||||||| Sbjct: 38580 tcttctttgcagcctcggccttct 38603
>emb|Y10779.1|SSY10779 S.stapfianus pSD.42 mRNA Length = 392 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggc 336 |||||||| ||||||||||||||| Sbjct: 158 ctcggcggtcttctgcttggcggc 135
>gb|AC134823.41| Medicago truncatula clone mth2-20d18, complete sequence Length = 119033 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 tcctcgacacacttcgcggc 312 |||||||||||||||||||| Sbjct: 19879 tcctcgacacacttcgcggc 19898
>ref|XM_504765.1| Yarrowia lipolytica CLIB122, YALI0E34265g predicted mRNA Length = 1599 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 1344 cttcttggcagcctcggcct 1325
>emb|X52319.1|DMPROS29 Fruit fly mRNA for proteosome subunit Length = 928 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 842 cttcttggcagcctcggcct 823
>gb|AE005872.1| Caulobacter crescentus CB15 section 198 of 359 of the complete genome Length = 12212 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 ttggcggcctcgtcggccttggcg 623 ||||||||||||||| |||||||| Sbjct: 11764 ttggcggcctcgtcgaccttggcg 11787
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ggcggcctcgtcggccttgg 621 |||||||||||||||||||| Sbjct: 3048342 ggcggcctcgtcggccttgg 3048323
>ref|NM_057343.3| Drosophila melanogaster Proteasome 29kD subunit CG9327-RA (Pros29), mRNA Length = 971 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 854 cttcttggcagcctcggcct 835
>gb|AY084140.1| Drosophila melanogaster RE23862 full insert cDNA Length = 988 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 855 cttcttggcagcctcggcct 836
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 ggcctcgtcggccttggcgt 624 |||||||||||||||||||| Sbjct: 2769341 ggcctcgtcggccttggcgt 2769322
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tggcggcgtcgccggtgtcg 349 |||||||||||||||||||| Sbjct: 20695518 tggcggcgtcgccggtgtcg 20695499
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttggcggcgtcgccggtgtc 348 |||||||||||||||||||| Sbjct: 22702469 ttggcggcgtcgccggtgtc 22702488
>gb|AC007888.7|AC007888 Drosophila melanogaster, chromosome 2R, region 57B6-57B13, BAC clone BACR10P11, complete sequence Length = 164035 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 40140 cttcttggcagcctcggcct 40159
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 484 ggccgcatcggcggtgtcggaggccgcc 511 |||||| ||||||||||||| ||||||| Sbjct: 2082007 ggccgcgtcggcggtgtcggtggccgcc 2082034
>gb|AY148490.1| Triticum aestivum LEA1 protein (LEA1) mRNA, complete cds Length = 843 Score = 40.1 bits (20), Expect = 8.8 Identities = 62/76 (81%) Strand = Plus / Minus Query: 311 gcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcc 370 |||||||||| ||||||| |||| || || ||| ||| ||||| ||| |||||| ||| Sbjct: 451 gcctcggcggccttctgcctggccgcctccgtggtctcggcggccttctgcttggccgcc 392 Query: 371 tcggccttctcgccga 386 || | ||||||||||| Sbjct: 391 tccgtcttctcgccga 376
>dbj|AB189026.1| Plutella xylostella mRNA for proteasome alpha 4 subunit, complete cds Length = 935 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 849 cttcttggcagcctcggcct 830
>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1773_H01 Length = 146543 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttggcggcgtcgccggtgtc 348 |||||||||||||||||||| Sbjct: 120367 ttggcggcgtcgccggtgtc 120386
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ttggcggcgtcgccggtgtc 348 |||||||||||||||||||| Sbjct: 21811 ttggcggcgtcgccggtgtc 21830
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tggcggcgtcgccggtgtcg 349 |||||||||||||||||||| Sbjct: 67971 tggcggcgtcgccggtgtcg 67952
>emb|X56882.1|TA3LEA Wheat mRNA for a group 3 late embryogenesis abundant protein (LEA) Length = 934 Score = 40.1 bits (20), Expect = 8.8 Identities = 62/76 (81%) Strand = Plus / Minus Query: 311 gcctcggcggacttctgcttggcggcgtcgccggtgtcgacggccatcttcttggcagcc 370 |||||||||| ||||||| |||| || || ||| ||| ||||| ||| |||||| ||| Sbjct: 452 gcctcggcggccttctgcctggccgcctccgtggtctcggcggccttctgcttggccgcc 393 Query: 371 tcggccttctcgccga 386 || | ||||||||||| Sbjct: 392 tccgtcttctcgccga 377
>dbj|AK063406.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A08, full insert sequence Length = 1817 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ttggcggcgtcgccggtgtc 348 |||||||||||||||||||| Sbjct: 1186 ttggcggcgtcgccggtgtc 1167
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 211128 cttcttggcagcctcggcct 211109
>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397 (D206)), complete sequence Length = 89791 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 68601 cttcttggcagcctcggcct 68620
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cttcttggcagcctcggcct 377 |||||||||||||||||||| Sbjct: 4072513 cttcttggcagcctcggcct 4072532
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 ctcggcggacttctgcttggcggc 336 ||||||||||||| |||||||||| Sbjct: 1536343 ctcggcggacttcagcttggcggc 1536320
>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete sequence Length = 226854 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gctttgtctcctcccatccc 165 |||||||||||||||||||| Sbjct: 53207 gctttgtctcctcccatccc 53188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,503,783 Number of Sequences: 3902068 Number of extensions: 3503783 Number of successful extensions: 72297 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70401 Number of HSP's gapped (non-prelim): 1884 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)