ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36n03 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 188 bits (478), Expect = 1e-47 Identities = 90/114 (78%), Positives = 102/114 (89%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAG Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 291 Y+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK FE E +F + Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSN 114
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 124 bits (311), Expect = 3e-28 Identities = 57/105 (54%), Positives = 77/105 (73%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 318 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 124 bits (311), Expect = 3e-28 Identities = 57/105 (54%), Positives = 77/105 (73%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 318 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 122 bits (307), Expect = 7e-28 Identities = 57/107 (53%), Positives = 78/107 (72%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ EG KK+ E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 312 YK+PHPL++K ++RI T + SP +A+ AI DL EL ++ F+D Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKD 107
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 120 bits (300), Expect = 5e-27 Identities = 56/107 (52%), Positives = 77/107 (71%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ EG KK+ E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 312 YKLPHPL++K ++RI T S+ SP +A+ AI DL EL ++ F + Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFRE 107
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 111 bits (277), Expect = 2e-24 Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ + KK+ EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED---EKTRFESMKQ 282 YK PHPL++KI++R+ T + ++P A T AI DL EL L+ + + T+ ++ Sbjct: 60 YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKKCTQSTDTER 119 Query: 281 GY 276 GY Sbjct: 120 GY 121
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 109 bits (272), Expect = 9e-24 Identities = 55/106 (51%), Positives = 75/106 (70%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAP +E F++ + KK EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 315 YK PHPL++KI++RI T + ++P A T AI DL EL L+ + Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105
>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC| 2.7.7.6) (B13.6) Length = 120 Score = 92.8 bits (229), Expect = 8e-19 Identities = 47/108 (43%), Positives = 62/108 (57%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MNAPDR+E F++ EG K+ + DTK NA T E+EDHT+GN++R +L D V FA Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 309 YK+ HP + +RI T P A A N + +L LK FE E Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 92.4 bits (228), Expect = 1e-18 Identities = 49/108 (45%), Positives = 63/108 (58%) Frame = -1 Query: 632 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 453 MN P+RYE + G KV++E D+K NAA T+E+EDHT+ N+L QL D V FAG Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59 Query: 452 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 309 YK+PHPL + I+R+ T SP Q A L LE +K F E Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107
>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 65.5 bits (158), Expect = 1e-10 Identities = 34/112 (30%), Positives = 61/112 (54%) Frame = -1 Query: 629 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 450 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 449 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 294 + PHPLQ I + I + + + ++ + ++ L++ F + +++ Sbjct: 67 RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETFANRVQKYK 117
>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/118 (31%), Positives = 63/118 (53%) Frame = -1 Query: 629 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 450 N P+ + V+ G KKV+ K + F I+ EDHTIGN++++QL +DP V FA Y Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66 Query: 449 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMKQGY 276 + PHPLQ I + I + + + +N++ ++ LK+ F + +++ Y Sbjct: 67 RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENFAKKIQKYKESNSYY 123
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 64.7 bits (156), Expect = 2e-10 Identities = 34/112 (30%), Positives = 62/112 (55%) Frame = -1 Query: 629 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 450 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 449 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 294 + PHPLQ I + I + + + ++ + ++ L++ F ++ +++ Sbjct: 67 RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETFVNKVQKYK 117
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 62.4 bits (150), Expect = 1e-09 Identities = 27/84 (32%), Positives = 49/84 (58%) Frame = -1 Query: 551 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAY 372 + + +F I++EDHT+GN LR + ++P V F GY +PHP + K+ RI TA ++ Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91 Query: 371 TQAINDLDKELENLKQAFEDEKTR 300 + ++DL + + + F ++ R Sbjct: 92 RKGLDDLIDLCDAVTEKFTEQLPR 115
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 60.5 bits (145), Expect = 5e-09 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = -1 Query: 545 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQ 366 +ASF I EDHT+GN LR + ++P+V F GY +PHP + + +RI T +++ A + Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119 Query: 365 AINDL 351 + DL Sbjct: 120 GLKDL 124
>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 114 Score = 59.7 bits (143), Expect = 8e-09 Identities = 26/89 (29%), Positives = 47/89 (52%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 + +F + EDHT+GN LR + ++P V F GY + HP + KI RI T + + + Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81 Query: 368 QAINDLDKELENLKQAFEDEKTRFESMKQ 282 + +N+L +++ FE ++ K+ Sbjct: 82 RGLNELVDVCQHVLNTFETSIKEYKEQKE 110
>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 57.8 bits (138), Expect = 3e-08 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Frame = -1 Query: 593 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 423 EG +K + E + +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESK 79 Query: 422 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMK 285 I +RI T + + + +N+L +++ FE ++ K Sbjct: 80 INLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQK 125
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 57.0 bits (136), Expect = 5e-08 Identities = 29/95 (30%), Positives = 49/95 (51%) Frame = -1 Query: 575 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 396 SFE+D + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 53 SFEQDPSNLTLIMY---EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109 Query: 395 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 291 + + +A +++ ++ FE+ + +S Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFEESYEQSQS 144
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 56.6 bits (135), Expect = 7e-08 Identities = 26/86 (30%), Positives = 44/86 (51%) Frame = -1 Query: 539 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 360 +F + EDHT+GN LR + + +V F GY + HP + KI RI T ++ + Sbjct: 24 TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGL 83 Query: 359 NDLDKELENLKQAFEDEKTRFESMKQ 282 N+L +++ Q FE F+ ++ Sbjct: 84 NNLTDVCKHVLQTFEARMKEFKEQEE 109
>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 93 Score = 56.2 bits (134), Expect = 9e-08 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 N I+ E+HT+GN+L+ L + P V FA Y PHPL II++I T SP +A Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70 Query: 368 QAI----NDLDKELENLK 327 +AI D +K +E +K Sbjct: 71 KAIELAEEDTNKFIEEVK 88
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 56.2 bits (134), Expect = 9e-08 Identities = 33/95 (34%), Positives = 50/95 (52%) Frame = -1 Query: 575 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 396 SFE+D + + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 54 SFEQDPSNL---TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110 Query: 395 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 291 A+ L K E+++Q F + +FE+ Sbjct: 111 G-------INALEVLVKAFESVEQVFSTIRGKFEA 138
>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 55.8 bits (133), Expect = 1e-07 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%) Frame = -1 Query: 593 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 423 EG +K + E +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESK 79 Query: 422 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE----DEKTRFESMKQ 282 I +RI T + + + +N+L +++ FE D K + S K+ Sbjct: 80 INLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKKE 130
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/66 (43%), Positives = 37/66 (56%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 N IE EDHT+GN++ L R V FA Y PHPL KIIV+I T +P A Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70 Query: 368 QAINDL 351 +AI ++ Sbjct: 71 KAIENI 76
>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 90 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/80 (40%), Positives = 42/80 (52%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 N I+ E+HTIGN+L+ L + P V FA Y LPHPL I ++I T S +A Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70 Query: 368 QAINDLDKELENLKQAFEDE 309 +AI + EN F DE Sbjct: 71 KAI----ELAENYANLFIDE 86
>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 105 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/85 (31%), Positives = 42/85 (49%) Frame = -1 Query: 539 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 360 +F E HT+GN L+ + R P V F GY +PHP + K+ RI + + + + Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77 Query: 359 NDLDKELENLKQAFEDEKTRFESMK 285 DL+ ++ FE E F +MK Sbjct: 78 EDLEGLCDHTIVTFEKEMAEFNAMK 102
>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 375 N F +E EDHT N+L L +P+V F Y + HP+ K R+ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70 Query: 374 YTQAINDLDKELENLKQAFE 315 +A + + + + +A+E Sbjct: 71 LEEAAKKIFERAKEVLEAWE 90
>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 94 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 375 N F +E EDHT N+L LH + +V FAGY + HP+ K ++ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70 Query: 374 YTQAINDLDKELENLKQAFE 315 +A + + +A++ Sbjct: 71 LEEAAQKIFDRAREVLEAWK 90
>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = -1 Query: 536 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQA 363 F +E EDHT N+L L DP+V F Y + HP+ K R+ T + +P +A +A Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74 Query: 362 INDLDKELENLKQAFE 315 + + + A+E Sbjct: 75 ARKIFNRAKEVLDAWE 90
>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = -1 Query: 557 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP--LQYKIIVRIHTASQSSP 384 K + F +E EDHT N+L L +P+V F Y + HP + K R+ T + +P Sbjct: 8 KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITP 67 Query: 383 TQAYTQAINDLDKELENLKQAFE 315 +A +A + + + A+E Sbjct: 68 EKALEEAAKKIFDRAKEVLDAWE 90
>RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 111 Score = 37.4 bits (85), Expect = 0.041 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Frame = -1 Query: 593 EGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKI 420 E T + S +K N+ + + D+T+ L ++ +D V A Y + HP+ +I Sbjct: 4 ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQI 63 Query: 419 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 291 VR+ P A +A+ L K E+L F+ E R+ES Sbjct: 64 YVRV---KSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 103
>RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = -1 Query: 521 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKE 342 E +T+ + L L DP+V + + + HPLQ ++ + +P +A +A+N + + Sbjct: 24 ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKL-KVKRGNPLEAIQRAVNAILSD 82 Query: 341 LENLKQAF 318 LE L++ F Sbjct: 83 LEELERGF 90
>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 85 Score = 37.0 bits (84), Expect = 0.054 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 N E E HT+ N+LR L D V A Y + HP+ + + I S +A Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68 Query: 368 QAINDLDKELENL 330 + + D E L Sbjct: 69 ETLRDRCDEFRRL 81
>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 112 Score = 33.5 bits (75), Expect = 0.59 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Frame = -1 Query: 521 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS--PTQAYTQAIND-- 354 EDHT+ N+LR L+R + A Y++ HP I+ + H + P + +A+++ Sbjct: 25 EDHTLCNLLRWALNRQDGI-IATYRIEHP----ILGKEHKVDEERYVPPKMRIRAVDEDA 79 Query: 353 -----LDKELENLKQAFEDEKTRF 297 L++ +E L + E+ K F Sbjct: 80 DAREALERAIEELLELVEEAKEEF 103
>RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 99 Score = 33.1 bits (74), Expect = 0.78 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKII--------VRIHTASQ 393 N + EDH++ N+L+ L V A Y + HPL + + I T Sbjct: 11 NLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEG 70 Query: 392 SSPTQAYTQAINDLDKELENLKQAFEDEK 306 + P + + + D+ K + L +++K Sbjct: 71 TDPLEVLKEGLRDIIKMCDTLLDELKEKK 99
>RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 96 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -1 Query: 548 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 369 N + E HT+ N L+ + V A Y + HPL+ I T A Sbjct: 16 NLIKVQFKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALI 75 Query: 368 QAINDLDKELENLK 327 QA+ L +EL N K Sbjct: 76 QALKKLKEELLNFK 89
>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 86 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = -1 Query: 530 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQA 363 I+ E HT N+L+ L D +V A Y +PHPL + + I T S P +A +A Sbjct: 17 IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRA 71
>DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase (EC 6.3.4.6);| Allophanate hydrolase (EC 3.5.1.54)] Length = 1835 Score = 31.2 bits (69), Expect = 2.9 Identities = 29/108 (26%), Positives = 45/108 (41%) Frame = -1 Query: 626 APDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYK 447 A DRY +V G +++F +I ++ +++ TIG + Q R + F GYK Sbjct: 1441 AGDRY--VLVEYGDNEMNFNISYRI--ECLISLVKKNKTIGIVEMSQGVRSVLIEFDGYK 1496 Query: 446 LPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKT 303 + K++V T Q T + L AFED KT Sbjct: 1497 VTQKELLKVLVAYETEIQFDENWKIT-------SNIIRLPMAFEDSKT 1537
>RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 111 Score = 30.8 bits (68), Expect = 3.8 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = -1 Query: 578 VSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKIIVRIH 405 VS EKD+ I+ ++ D+T+ L ++ +D V A Y + HP+ +I V++ Sbjct: 14 VSKEKDSIIVEMINY-----DNTLLRTLVEEILKDDQVIEARYYIKHPIIDNPQIYVKV- 67 Query: 404 TASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 291 P A ++I L K E+L E E ++ S Sbjct: 68 --KSGKPQAAIKRSIRKLSKLYEDLGAQVEKEIEKYRS 103
>TSGA_SALTY (Q8ZLK7) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +1 Query: 367 WVYACVGEDWLAVWILT 417 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALTI (Q8Z1Z8) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +1 Query: 367 WVYACVGEDWLAVWILT 417 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALPA (Q5PLW2) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +1 Query: 367 WVYACVGEDWLAVWILT 417 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALCH (Q57J00) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +1 Query: 367 WVYACVGEDWLAVWILT 417 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,654,661 Number of Sequences: 219361 Number of extensions: 1876884 Number of successful extensions: 5655 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 5330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5639 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
