ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NRCAM_RAT (P97686) Neuronal cell adhesion molecule precursor (Nr... 29 3.4
2NRCAM_MOUSE (Q810U4) Neuronal cell adhesion molecule precursor (... 29 3.4
3ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast ... 29 3.4
4CYB_ASTPE (Q33818) Cytochrome b 28 4.5
5CYB_PELMA (O79217) Cytochrome b 28 5.9
6CYB_MELGA (P50663) Cytochrome b 28 5.9
7CYB_FRAFR (O20644) Cytochrome b 28 5.9
8CYB_CYACH (P92599) Cytochrome b 28 5.9
9G6PI_GEOSL (Q74DK5) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 28 7.7
10CYB_PARLI (P12778) Cytochrome b 28 7.7
11CYB_BRALA (P92472) Cytochrome b 28 7.7
12CYB_BRAFL (O47431) Cytochrome b 28 7.7
13O1102_MOUSE (Q8VES2) Olfactory receptor 1102 (Olfactory receptor... 28 7.7

>NRCAM_RAT (P97686) Neuronal cell adhesion molecule precursor (Nr-CAM)|
           (NgCAM-related cell adhesion molecule) (Ng-CAM-related)
           (rBravo) (Ankyrin-binding cell adhesion molecule NrCAM)
          Length = 1214

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 74  VKVALE*STGTVKCISRGKLTCKKRSRKYSNHHLRFRLPARSIYHASFCLVR 229
           + VA + STGT  C++R KL   K     +  HL  + P R I    + +V+
Sbjct: 512 IPVAQKDSTGTYTCVARNKLGMAK-----NEVHLEIKDPTRFIKQPGYAVVQ 558



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>NRCAM_MOUSE (Q810U4) Neuronal cell adhesion molecule precursor (Nr-CAM)|
           (NgCAM-related cell adhesion molecule) (Ng-CAM-related)
           (mBravo)
          Length = 1256

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 74  VKVALE*STGTVKCISRGKLTCKKRSRKYSNHHLRFRLPARSIYHASFCLVR 229
           + VA + STGT  C++R KL   K     +  HL  + P R I    + +V+
Sbjct: 506 IPVAQKDSTGTYTCVARNKLGMAK-----NEVHLEIKDPTRIIKQPEYAVVQ 552



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>ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast precursor (EC|
           4.1.2.13) (ALDP)
          Length = 388

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -2

Query: 305 EAKEGMFVKNYSY 267
           EAKEGMFVKNY Y
Sbjct: 376 EAKEGMFVKNYVY 388



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>CYB_ASTPE (Q33818) Cytochrome b|
          Length = 379

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 123 LDMHFT--VPVDYSKATFTCVIHGFAWLLQNLHVRT 22
           L MH+T  V + +S  +  C    + WLL+N+H  T
Sbjct: 52  LAMHYTSDVSLAFSSVSHICRDVNYGWLLRNIHANT 87



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>CYB_PELMA (O79217) Cytochrome b|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T      +S  T TC    + WL++NLH
Sbjct: 52  LAMHYTADTTLAFSSVTHTCRNVQYGWLIRNLH 84



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>CYB_MELGA (P50663) Cytochrome b|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T      +S   +TC    + WLL NLH
Sbjct: 52  LAMHYTADTTLAFSSVAYTCRNVQYGWLLHNLH 84



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>CYB_FRAFR (O20644) Cytochrome b|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T      +S   +TC    + WL++NLH
Sbjct: 52  LAMHYTADTSLAFSSVAYTCRNVQYGWLIRNLH 84



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>CYB_CYACH (P92599) Cytochrome b|
          Length = 380

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -1

Query: 123 LDMHFTVPVDYSKATFTCVIH-----GFAWLLQNLH 31
           L MH+T    Y+   FT V H      F WL++NLH
Sbjct: 52  LAMHYTADTSYA---FTSVAHMCRNVQFGWLIRNLH 84



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>G6PI_GEOSL (Q74DK5) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 529

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 90  NNLLEQ*SAYREAN*RVKKDLENTVIIISGSGSQLDR 200
           N +LE  +AYR A      D     + ++G+GS+LDR
Sbjct: 187 NGMLEAEAAYRRAG----LDFSRHAVAVTGAGSELDR 219



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>CYB_PARLI (P12778) Cytochrome b|
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T  +   +S A+  C    + WLL+N+H
Sbjct: 52  LAMHYTADISLAFSSASHICRDVNYGWLLRNVH 84



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>CYB_BRALA (P92472) Cytochrome b|
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T  V+  +S     C    + WLL+NLH
Sbjct: 52  LAMHYTADVNLAFSSVAHICRDVNYGWLLRNLH 84



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>CYB_BRAFL (O47431) Cytochrome b|
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 123 LDMHFTVPVD--YSKATFTCVIHGFAWLLQNLH 31
           L MH+T  V+  +S     C    + WLL+NLH
Sbjct: 52  LAMHYTADVNLAFSSVAHICRDVNYGWLLRNLH 84



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>O1102_MOUSE (Q8VES2) Olfactory receptor 1102 (Olfactory receptor 179-4)|
          Length = 324

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 135 RVKKDLENTVIIISGSGSQLDRYIMHLSAW*GTYVVVLIGMVRLIAVVFDEHAL 296
           +V    E TV I+ G    +D  I     +   YVV LIG + L+ +V ++  L
Sbjct: 14  QVNNVTEITVFILLGFTDDVDMNIFLFILFLAIYVVTLIGNLGLVVLVIEDSRL 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,398,063
Number of Sequences: 219361
Number of extensions: 620897
Number of successful extensions: 1923
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1923
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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