ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate al... 54 3e-04
2gb|AY103557.1| Zea mays PCO070710 mRNA sequence 54 3e-04
3gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
5dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
6dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
8dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolas... 50 0.004
9emb|CR759746.6| Zebrafish DNA sequence from clone DKEY-253O14 in... 44 0.26
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
12emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 44 0.26
13gb|AC145945.2| Gallus gallus chromosome UNK clone CH261-23M4, co... 42 1.0
14emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 42 1.0
15gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, com... 42 1.0
16gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds 42 1.0
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
18dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0 
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1577

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 268  tagctgtagtttttgacgaacatgccctctttggc 302
            ||||||||||| ||||||||||||||||| |||||
Sbjct: 1261 tagctgtagttcttgacgaacatgccctccttggc 1227
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>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 263  attaatagctgtagtttttgacgaacatgccctctttggcctc 305
            |||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 1407 attagtagctgtagttcttgacgaacattccctccttggcctc 1365
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 273   gtagtttttgacgaacatgccctctttggcctc 305
             |||||| ||||||||||||||||| ||||||||
Sbjct: 63362 gtagttcttgacgaacatgccctccttggcctc 63394
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 273     gtagtttttgacgaacatgccctctttggcctc 305
               |||||| ||||||||||||||||| ||||||||
Sbjct: 3469407 gtagttcttgacgaacatgccctccttggcctc 3469439
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>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full
            insert sequence
          Length = 1492

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 273  gtagtttttgacgaacatgccctctttggcctc 305
            |||||| ||||||||||||||||| ||||||||
Sbjct: 1252 gtagttcttgacgaacatgccctccttggcctc 1220
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>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full
            insert sequence
          Length = 1622

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 273  gtagtttttgacgaacatgccctctttggcctc 305
            |||||| ||||||||||||||||| ||||||||
Sbjct: 1248 gtagttcttgacgaacatgccctccttggcctc 1216
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 273     gtagtttttgacgaacatgccctctttggcctc 305
               |||||| ||||||||||||||||| ||||||||
Sbjct: 3478111 gtagttcttgacgaacatgccctccttggcctc 3478143
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>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp
          Length = 2915

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 273  gtagtttttgacgaacatgccctctttggcctc 305
            |||||| ||||||||||||||||| ||||||||
Sbjct: 2780 gtagttcttgacgaacatgccctccttggcctc 2748
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>emb|CR759746.6| Zebrafish DNA sequence from clone DKEY-253O14 in linkage group 5,
             complete sequence
          Length = 50823

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 16    cagtacagtacgtacatgcaaatttt 41
             |||||||||||||||||||| |||||
Sbjct: 27786 cagtacagtacgtacatgcacatttt 27761
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 35      aaattttgcagtaaccatgcaaatcc 60
               ||||||||||| ||||||||||||||
Sbjct: 3543903 aaattttgcagcaaccatgcaaatcc 3543878



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 272     tgtagtttttgacgaacatgccctctttggcctc 305
               ||||||| |||||||||||||||||  |||||||
Sbjct: 3543505 tgtagttcttgacgaacatgccctcgctggcctc 3543472
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 35      aaattttgcagtaaccatgcaaatcc 60
               ||||||||||| ||||||||||||||
Sbjct: 3543848 aaattttgcagcaaccatgcaaatcc 3543823



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 272     tgtagtttttgacgaacatgccctctttggcctc 305
               ||||||| |||||||||||||||||  |||||||
Sbjct: 3543450 tgtagttcttgacgaacatgccctcgctggcctc 3543417
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 35    aaattttgcagtaaccatgcaaatcc 60
             ||||||||||| ||||||||||||||
Sbjct: 58831 aaattttgcagcaaccatgcaaatcc 58806



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 272   tgtagtttttgacgaacatgccctctttggcctc 305
             ||||||| |||||||||||||||||  |||||||
Sbjct: 58433 tgtagttcttgacgaacatgccctcgctggcctc 58400
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>gb|AC145945.2| Gallus gallus chromosome UNK clone CH261-23M4, complete sequence
          Length = 199148

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   atatcatgcatctttctgctt 222
             |||||||||||||||||||||
Sbjct: 59750 atatcatgcatctttctgctt 59770
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    gatctagaaaatacagtaatc 167
              |||||||||||||||||||||
Sbjct: 514505 gatctagaaaatacagtaatc 514485
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>gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, complete sequence
          Length = 163228

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 148   atctagaaaatacagtaatcatcat 172
             ||||| |||||||||||||||||||
Sbjct: 76537 atctacaaaatacagtaatcatcat 76513
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>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds
          Length = 1302

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 273  gtagtttttgacgaacatgccctctttggcctc 305
            |||||| |||||||||||||| || ||||||||
Sbjct: 1144 gtagttcttgacgaacatgccttccttggcctc 1112
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     cagtacagtacgtacatgca 35
              ||||||||||||||||||||
Sbjct: 289832 cagtacagtacgtacatgca 289813
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>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0075G19
          Length = 163558

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     cagtacagtacgtacatgca 35
              ||||||||||||||||||||
Sbjct: 154728 cagtacagtacgtacatgca 154709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,419,434
Number of Sequences: 3902068
Number of extensions: 2419434
Number of successful extensions: 41369
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41234
Number of HSP's gapped (non-prelim): 135
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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