ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF4E5_CAEEL (P56570) Eukaryotic translation initiation factor 4E... 30 2.4
2CREG1_MOUSE (O88668) CREG1 protein precursor (Cellular repressor... 29 5.4

>IF4E5_CAEEL (P56570) Eukaryotic translation initiation factor 4E-5 (eIF4E-5)|
           (eIF-4E-5) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit)
          Length = 240

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -3

Query: 223 LADFPLARXX*KVKLKVMEAWRSGRDLLCAIRAREYNCLMGI-----VRALEQKYNCLME 59
           L D+ + R   + K +  E W  GR L+   + +    L  +     +  + +++   ME
Sbjct: 99  LCDYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDME 158

Query: 58  SICVTVCNIRYQ 23
           SIC  VCN+R Q
Sbjct: 159 SICGLVCNVRGQ 170



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>CREG1_MOUSE (O88668) CREG1 protein precursor (Cellular repressor of|
           E1A-stimulated genes 1)
          Length = 220

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 RQTRAKLLAQTSSALFISPVDTEGFLSSGDWGRIVIDFRPQATPPR 355
           R   A LLA    AL +SP    G    GDW    +D R    PPR
Sbjct: 10  RSLLAALLAPALVALLVSPASGRGGRDHGDWD---VDRRLPPLPPR 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,413,900
Number of Sequences: 219361
Number of extensions: 1433255
Number of successful extensions: 3555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3552
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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