>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory particle non-ATPase subunit 7)
           (OsRPN7)
          Length = 389

 Score =  262 bits (670), Expect = 5e-70
 Identities = 131/138 (94%), Positives = 135/138 (97%)
 Frame = -1

Query: 584 KVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESY 405
           KVPHLSEFLNSLY+CQYKSFF AFSGLTEQIKLDRYLQPHFRY+MREVRTVVYSQFLESY
Sbjct: 252 KVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESY 311

Query: 404 KSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIK 225
           KSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARNAFYQ+TIK
Sbjct: 312 KSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIK 371

Query: 224 QGDFLLNRIQKLSRVIDL 171
           QGDFLLNRIQKLSRVIDL
Sbjct: 372 QGDFLLNRIQKLSRVIDL 389

>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6|
          Length = 387

 Score =  243 bits (621), Expect = 2e-64
 Identities = 119/138 (86%), Positives = 130/138 (94%)
 Frame = -1

Query: 584 KVPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESY 405
           K+P LSEFLNSLY+CQYK+FF AF+G+  QIK DRYL PHFR++MREVRTVVYSQFLESY
Sbjct: 250 KIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESY 309

Query: 404 KSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIK 225
           KSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+NA YQ+TIK
Sbjct: 310 KSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIK 369

Query: 224 QGDFLLNRIQKLSRVIDL 171
           QGDFLLNRIQKLSRVIDL
Sbjct: 370 QGDFLLNRIQKLSRVIDL 387

>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (Rpn7 protein)
          Length = 389

 Score =  181 bits (459), Expect = 1e-45
 Identities = 81/137 (59%), Positives = 117/137 (85%)
 Frame = -1

Query: 581 VPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYK 402
           +P + +FL SLY+CQY++F+V  +G+ +Q++LD  + PH+RY++RE+R + Y+Q LESY+
Sbjct: 253 LPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMRILGYTQLLESYR 312

Query: 401 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 222
           S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N  YQ+TIKQ
Sbjct: 313 SLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQ 372

Query: 221 GDFLLNRIQKLSRVIDL 171
           GD LLNRIQKLSRVI++
Sbjct: 373 GDLLLNRIQKLSRVINI 389

>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A)
          Length = 389

 Score =  170 bits (431), Expect = 2e-42
 Identities = 81/137 (59%), Positives = 109/137 (79%)
 Frame = -1

Query: 581 VPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYK 402
           +P + ++L SLY+C+Y  FF + + + +++K D    PH+RY++RE+R   YSQ LESY+
Sbjct: 253 LPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYR 312

Query: 401 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 222
           S+T+  MA AFGV VDFIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ TIK+
Sbjct: 313 SLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372

Query: 221 GDFLLNRIQKLSRVIDL 171
           GD LLNR+QKLSRVI++
Sbjct: 373 GDLLLNRVQKLSRVINM 389

>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A) (Proteasome
           regulatory particle subunit p44S10) (Phosphonoformate
           immuno-associated protein 4) (Breast cancer-associated
           protein SGA-113M)
          Length = 389

 Score =  169 bits (428), Expect = 5e-42
 Identities = 80/137 (58%), Positives = 109/137 (79%)
 Frame = -1

Query: 581 VPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYK 402
           +P + ++L SLY+C+Y  FF + + + +++K D    PH+RY++RE+R   YSQ LESY+
Sbjct: 253 LPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYR 312

Query: 401 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 222
           S+T+  MA AFGV V+FIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ TIK+
Sbjct: 313 SLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKK 372

Query: 221 GDFLLNRIQKLSRVIDL 171
           GD LLNR+QKLSRVI++
Sbjct: 373 GDLLLNRVQKLSRVINM 389

>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit rpn-7)
          Length = 410

 Score =  143 bits (360), Expect = 4e-34
 Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
 Frame = -1

Query: 566 EFLNSLYDCQYKSFFVAFSGL-TEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKSVTM 390
           E+L S YDC Y  FF+  + L +E+ K DRYL PHF Y+ R +R   Y QFL  YK+V +
Sbjct: 278 EYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRI 337

Query: 389 EAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGDFL 210
           + MA  FGV+  FID+EL R IA G+L C+ID V GV+E N  D++N  Y++ IK GD L
Sbjct: 338 DMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDIL 397

Query: 209 LNRIQKLSRVID 174
           LNRIQKL+RVI+
Sbjct: 398 LNRIQKLARVIN 409

>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7|
          Length = 409

 Score =  134 bits (338), Expect = 1e-31
 Identities = 65/140 (46%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
 Frame = -1

Query: 572 LSEFLNSLYDCQYKSFFVAFSGL-TEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKSV 396
           L   +NSLY C Y  FF   + +    +K D++L  H+RY++RE+R   Y+Q LESY+++
Sbjct: 270 LEACINSLYLCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRAL 329

Query: 395 TMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGD 216
           ++++MAA+FGV+VD+ID++L+ FI   KL+C ID+V GV+ TNRPD +N  YQ  +KQGD
Sbjct: 330 SIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQGD 389

Query: 215 FLLNRIQKLSRVIDL*AFFV 156
            LLN++QK    +   AF V
Sbjct: 390 VLLNKLQKYQATVMRGAFKV 409

>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7|
          Length = 429

 Score =  115 bits (287), Expect = 1e-25
 Identities = 58/135 (42%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
 Frame = -1

Query: 572 LSEFLNSLYDCQYKSFFVAFSGLTEQIKLD-RYLQPHFRYFMREVRTVVYSQFLESYKSV 396
           +S    SLY   Y S+F         + +  +YL  H  +F+RE+R  VY+Q LESYK++
Sbjct: 289 ISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTL 348

Query: 395 TMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGD 216
           ++++MA+AFGV+V F+D +L +FI   +L+C ID+V G++ETNRPD +NA Y   +KQGD
Sbjct: 349 SLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGD 408

Query: 215 FLLNRIQKLSRVIDL 171
            LL ++QK    + L
Sbjct: 409 GLLTKLQKYGAAVRL 423

>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein)
          Length = 471

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 33/120 (27%), Positives = 58/120 (48%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P + + +   Y+ +Y S       + + + LD YL PH R    ++R     Q+   Y S
Sbjct: 304 PQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVS 363

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
             M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  ++ ++  G
Sbjct: 364 ADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423

>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
          Length = 487

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 32/120 (26%), Positives = 58/120 (48%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P + + +   Y+ +Y S       + + + LD YL PH R    ++R     Q+   Y S
Sbjct: 320 PQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVS 379

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
             M  MA AF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  ++ +++ G
Sbjct: 380 ADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMG 439

>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (MFH protein)
          Length = 471

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 33/120 (27%), Positives = 58/120 (48%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P + + +   Y+ +Y S       + + + LD YL PH R    ++R     Q+   Y S
Sbjct: 304 PQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVS 363

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
             M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  ++ ++  G
Sbjct: 364 ADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423

>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein) (MFH
           protein)
          Length = 471

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 32/120 (26%), Positives = 57/120 (47%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P + + +   Y+ +Y S       + + + LD YL PH R    ++R     Q+   Y S
Sbjct: 304 PQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVS 363

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
             M  MAAAF  TV  ++ EL++ I  G +  ++D  + +L     D R+  ++ ++  G
Sbjct: 364 ADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMG 423

>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (Constitutive photomorphogenesis protein 11) (FUSCA
           protein 6) (FUSCA6)
          Length = 441

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 33/122 (27%), Positives = 56/122 (45%)
 Frame = -1

Query: 581 VPHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYK 402
           VP + E +N  Y  +Y S     + L   + LD +L  H      ++R     Q+   + 
Sbjct: 292 VPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFV 351

Query: 401 SVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQ 222
           SV +  MA AF  +V  +++EL   I   ++  +ID    +L     D RNA +Q  ++ 
Sbjct: 352 SVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQM 411

Query: 221 GD 216
           G+
Sbjct: 412 GN 413

>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit|
           1b) (Dch1-2)
          Length = 525

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 29/120 (24%), Positives = 54/120 (45%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P L + +   Y+ +Y S       + + + +D Y+ PH      ++R     Q+   Y S
Sbjct: 353 PQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMS 412

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
             M  MA AF  +V  ++ E+ + I  G++  +ID    +L     D RN+ ++  +  G
Sbjct: 413 ADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472

>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (Dch2) (Alien protein)
          Length = 444

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 27/128 (21%), Positives = 57/128 (44%)
 Frame = -1

Query: 572 LSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKSVT 393
           ++  +NS  +     F          I  D++++ H    +R +RT V  + +  YK++ 
Sbjct: 312 MTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIA 371

Query: 392 MEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQGDF 213
           +  +A A  +    ++  L   I    +  +ID+V  VL+ ++ ++  + Y +  K    
Sbjct: 372 IPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWS-- 429

Query: 212 LLNRIQKL 189
             N+IQ L
Sbjct: 430 --NQIQSL 435

>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = -1

Query: 407 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 228
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AGV+   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428

Query: 227 KQGDFLLNRIQKLSRVI 177
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = -1

Query: 407 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 228
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 227 KQGDFLLNRIQKLSRVI 177
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = -1

Query: 407 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 228
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 227 KQGDFLLNRIQKLSRVI 177
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445

>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (SGN1)
          Length = 422

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 23/97 (23%), Positives = 39/97 (40%)
 Frame = -1

Query: 578 PHLSEFLNSLYDCQYKSFFVAFSGLTEQIKLDRYLQPHFRYFMREVRTVVYSQFLESYKS 399
           P L   L +  + +Y           +   LD YL P        +R      +L  Y +
Sbjct: 262 PSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSA 321

Query: 398 VTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKV 288
           +    +A  F +  +FI++ L   I A KL+ K+D +
Sbjct: 322 LPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSL 358

>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)|
          Length = 261

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 302 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 177
           K  KVA V+  NRP A NA    T+K+ D+++  I+  S V+
Sbjct: 10  KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50

>SYC_STRMU (Q8DWA9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 447

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -1

Query: 479 YLQPHFRYFMREVRTVVYSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCK 300
           Y QP    F   V   V+++FLE +++   E    A G+TV F   EL+++I +G     
Sbjct: 325 YEQP----FTATVDEAVFARFLEKFQAAMDEDFNTANGITVVF---ELAKWINSGHYDQT 377

Query: 299 I-DKVAGVLE 273
           + DK A +L+
Sbjct: 378 VKDKFAEILQ 387

>DUS2_BACSU (O31546) Probable tRNA-dihydrouridine synthase 2 (EC 1.-.-.-)|
          Length = 325

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -2

Query: 433 LSIRSSLSHTRV*QWRQWLPHLV*QLIS 350
           +S+++ L +T V +WR+WL H++ Q I+
Sbjct: 140 VSVKTRLGYTDVDEWREWLTHILKQDIA 167

>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE|
          Length = 454

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -1

Query: 359 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 219
           +DF D+E+  F++ GK+  K+D+V   LE  R  AR     S +++G
Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216

>HXK4_RAT (P17712) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type|
           IV) (HK IV) (HK4) (Hexokinase-D)
          Length = 465

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 190 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 369
           SF +R       ++++W K F+ASG   +     L         AIKR   + M      
Sbjct: 151 SFPVRHEDLDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203

Query: 370 NAAAIASIVTLLYDSRNCE 426
           N   +A++++  Y+ R CE
Sbjct: 204 N-DTVATMISCYYEDRQCE 221

>GGAA_BACSU (P46917) Minor teichoic acid biosynthesis protein ggaA|
          Length = 446

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 411 LKELRIDNSAHFTHEVAEMWLQVSV*LDLLRQARECHKK*LVLTIVEGIEKFREVRY 581
           +K LR++ + HF ++  EM     + +   ++ ++C +K L  TI     K R+ RY
Sbjct: 346 IKGLRLELTGHFINQYYEMKENDRIYIKYFKRLKKCKRKELKKTIEVWGYKLRDFRY 402


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,690,807
Number of Sequences: 219361
Number of extensions: 1742945
Number of successful extensions: 4307
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)