ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36m18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF140496.2| Oryza sativa (japonica cultivar-group) cholinepho... 44 0.098
2gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 gen... 44 0.098
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.098
4dbj|AK073939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.098
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.098
6gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 40 1.5
7gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 40 1.5
8dbj|D86993.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 1.5
9dbj|D88268.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 1.5
10dbj|D87001.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 1.5
11gb|BT016584.1| Zea mays clone Contig417 mRNA sequence 38 6.0
12gb|AC125216.3| Mus musculus BAC clone RP23-109J14 from 1, comple... 38 6.0
13gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete s... 38 6.0
14gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete se... 38 6.0
15gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete seq... 38 6.0
16gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complet... 38 6.0
17gb|AC004466.1| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park C... 38 6.0
18gb|AY112644.1| Zea mays CL24723_1 mRNA sequence 38 6.0
19gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Ca... 38 6.0 
>gb|AF140496.2| Oryza sativa (japonica cultivar-group) cholinephosphate
            cytidylyltransferase (CPCT) mRNA, complete cds
          Length = 1464

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 51   caccaaacgcctntgctatagacat 75
            |||||||||||| ||||||||||||
Sbjct: 1274 caccaaacgcctctgctatagacat 1250
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>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete
             sequence
          Length = 139999

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 51    caccaaacgcctntgctatagacat 75
             |||||||||||| ||||||||||||
Sbjct: 13932 caccaaacgcctctgctatagacat 13956
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       caccaaacgcctntgctatagacat 75
                |||||||||||| ||||||||||||
Sbjct: 22559263 caccaaacgcctctgctatagacat 22559287
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>dbj|AK073939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076F05, full
            insert sequence
          Length = 1436

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 51   caccaaacgcctntgctatagacat 75
            |||||||||||| ||||||||||||
Sbjct: 1283 caccaaacgcctctgctatagacat 1259
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 51       caccaaacgcctntgctatagacat 75
                |||||||||||| ||||||||||||
Sbjct: 22571731 caccaaacgcctctgctatagacat 22571755
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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     caaaactgtgaaacaataca 105
              ||||||||||||||||||||
Sbjct: 122025 caaaactgtgaaacaataca 122006
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>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    caaaactgtgaaacaataca 105
             ||||||||||||||||||||
Sbjct: 63781 caaaactgtgaaacaataca 63762
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>dbj|D86993.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:23C6
          Length = 39752

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   caaaactgtgaaacaataca 105
            ||||||||||||||||||||
Sbjct: 1724 caaaactgtgaaacaataca 1705
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>dbj|D88268.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9
          Length = 44553

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    caaaactgtgaaacaataca 105
             ||||||||||||||||||||
Sbjct: 39117 caaaactgtgaaacaataca 39098
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>dbj|D87001.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9
            downstream contig
          Length = 13488

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 86   caaaactgtgaaacaataca 105
            ||||||||||||||||||||
Sbjct: 8052 caaaactgtgaaacaataca 8033
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>gb|BT016584.1| Zea mays clone Contig417 mRNA sequence
          Length = 1300

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 50   acaccaaacgcctntgctatagacat 75
            ||||||||||||| | ||||||||||
Sbjct: 1140 acaccaaacgcctctcctatagacat 1115
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>gb|AC125216.3| Mus musculus BAC clone RP23-109J14 from 1, complete sequence
          Length = 218169

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    acaaaactgtgaaacaata 103
             |||||||||||||||||||
Sbjct: 97132 acaaaactgtgaaacaata 97114
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>gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete sequence
          Length = 125129

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 94   tgaaacaatacacacacgc 112
            |||||||||||||||||||
Sbjct: 5297 tgaaacaatacacacacgc 5279
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>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
          Length = 110437

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    tgaaacaatacacacacgc 112
             |||||||||||||||||||
Sbjct: 20968 tgaaacaatacacacacgc 20986
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>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
          Length = 129197

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    tgaaacaatacacacacgc 112
             |||||||||||||||||||
Sbjct: 31227 tgaaacaatacacacacgc 31245
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>gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complete sequence
          Length = 132626

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 82    agtacaaaactgtgaaacaatac 104
             |||| ||||||||||||||||||
Sbjct: 83453 agtagaaaactgtgaaacaatac 83431
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>gb|AC004466.1| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park Cancer Institute Human
             PAC library) complete sequence
          Length = 122186

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    caaaactgtgaaacaatac 104
             |||||||||||||||||||
Sbjct: 54096 caaaactgtgaaacaatac 54078
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>gb|AY112644.1| Zea mays CL24723_1 mRNA sequence
          Length = 639

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 50  acaccaaacgcctntgctatagacat 75
           ||||||||||||| | ||||||||||
Sbjct: 132 acaccaaacgcctctcctatagacat 157
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>gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114097

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    tgtgaaacaatacacacac 110
             |||||||||||||||||||
Sbjct: 32683 tgtgaaacaatacacacac 32701


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 549,045
Number of Sequences: 3902068
Number of extensions: 549045
Number of successful extensions: 32996
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32953
Number of HSP's gapped (non-prelim): 43
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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