ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37b17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 76 2e-10
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
3ref|XM_473611.1| Oryza sativa (japonica cultivar-group), predic... 70 1e-08
4dbj|AK060559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
5gb|AY844956.1| Zea mays beta-carotene hydroxylase (HYD1) mRNA, c... 58 4e-05
6gb|AY844957.1| Zea mays beta-carotene hydroxylase (HYD3) gene, c... 54 6e-04
7gb|BT018945.1| Zea mays clone Contig93.F mRNA sequence 52 0.002
8gb|AY844958.1| Zea mays beta-carotene hydroxylase (HYD3) mRNA, c... 52 0.002
9gb|AY104495.1| Zea mays PCO148057 mRNA sequence 52 0.002
10gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complet... 46 0.15
11gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromo... 46 0.15
12gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, comp... 44 0.61
13ref|XM_512028.1| PREDICTED: Pan troglodytes similar to KIAA0802 ... 42 2.4
14gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, com... 42 2.4
15ref|NM_015210.1| Homo sapiens KIAA0802 (KIAA0802), mRNA 42 2.4
16dbj|AK131528.1| Homo sapiens cDNA FLJ16757 fis, clone BRACE3026993 42 2.4
17dbj|AK090691.1| Homo sapiens cDNA FLJ33372 fis, clone BRACE2005981 42 2.4
18ref|NM_136618.3| Drosophila melanogaster CG8055-RA (CG8055), mRNA 42 2.4
19gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, r... 42 2.4
20dbj|AB018345.2| Homo sapiens mRNA for KIAA0802 protein, partial cds 42 2.4
21gb|AY069131.1| Drosophila melanogaster GH13992 full insert cDNA 42 2.4
22gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16... 42 2.4
23dbj|AP005205.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.4
24dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 2.4
25gb|M24392.1|MXARTR M.xanthus reverse transcriptase gene, complet... 42 2.4
26gb|K02075.1|MXARSSMS Myxococcus xanthus satellite multicopy sing... 42 2.4
27ref|XM_367779.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 9.5
28ref|NM_010709.1| Mus musculus ligatin (Lgtn), mRNA 40 9.5
29ref|XM_653669.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 9.5
30gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, com... 40 9.5
31ref|XM_988475.1| PREDICTED: Mus musculus gene model 24, (NCBI) (... 40 9.5
32ref|XM_906408.2| PREDICTED: Mus musculus gene model 24, (NCBI) (... 40 9.5
33ref|XM_111442.5| PREDICTED: Mus musculus gene model 24, (NCBI) (... 40 9.5
34ref|XM_923807.2| PREDICTED: Mus musculus RIKEN cDNA A530050D06 g... 40 9.5
35ref|XM_915536.2| PREDICTED: Mus musculus RIKEN cDNA A530050D06 g... 40 9.5
36ref|XM_203596.7| PREDICTED: Mus musculus RIKEN cDNA A530050D06 g... 40 9.5
37ref|XM_542991.2| PREDICTED: Canis familiaris similar to Protein-... 40 9.5
38emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 9.5
39gb|BC023709.1| Mus musculus ligatin, mRNA (cDNA clone IMAGE:5346... 40 9.5
40gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete... 40 9.5
41gb|BC025036.1| Mus musculus ligatin, mRNA (cDNA clone MGC:36900 ... 40 9.5
42gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, co... 40 9.5
43gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 9.5
44gb|AC099558.2| Homo sapiens chromosome 3 clone RP11-680P23, comp... 40 9.5
45gb|AF508802.1| Homo sapiens bac54tar, complete sequence 40 9.5
46gb|CP000088.1| Thermobifida fusca YX, complete genome 40 9.5
47emb|AL589879.21| Mouse DNA sequence from clone RP23-38E20 on chr... 40 9.5
48emb|AL606968.9| Mouse DNA sequence from clone RP23-287K23 on chr... 40 9.5
49gb|AC112169.2| Homo sapiens chromosome 5 clone CTD-2016H11, comp... 40 9.5
50gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, comp... 40 9.5
51dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 9.5
52gb|AC010996.9| Homo sapiens chromosome 10 clone RP11-118J22, com... 40 9.5
53dbj|AK133022.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.5
54dbj|AK139052.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 9.5
55dbj|AK161269.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.5
56ref|NM_175486.1| Mus musculus RIKEN cDNA 6430571L13 gene (643057... 40 9.5
57dbj|AK171115.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.5
58dbj|AK168120.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 9.5
59dbj|AK166085.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 40 9.5
60dbj|AK167980.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 9.5
61dbj|AK170448.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.5
62dbj|AK170252.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.5
63dbj|AK043338.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 9.5
64dbj|AK085251.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 40 9.5
65dbj|AK047005.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 9.5
66dbj|AK036154.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 9.5
67dbj|AK032501.1| Mus musculus adult male olfactory brain cDNA, RI... 40 9.5
68dbj|AK032358.1| Mus musculus adult male olfactory brain cDNA, RI... 40 9.5
69dbj|AK046539.1| Mus musculus adult male adrenal gland cDNA, RIKE... 40 9.5
70dbj|AK083638.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 9.5
71dbj|AK034115.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 9.5
72dbj|AK082748.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 9.5
73dbj|AK078472.1| Mus musculus 12 days embryo female mullerian duc... 40 9.5
74gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete ... 40 9.5
75gb|BC089617.1| Mus musculus cDNA clone IMAGE:6766474 40 9.5
76gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 ma... 40 9.5
77gb|BC023353.1| Mus musculus RIKEN cDNA A530050D06 gene, mRNA (cD... 40 9.5
78gb|U58337.1|MMU58337 Mus musculus ligatin (Lgtn) mRNA, partial cds 40 9.5
79emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chr... 40 9.5
80emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on ch... 40 9.5 
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
             complete sequence
          Length = 157734

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 465   tccggttgattctggcgagctcctgctccagctcgtcgaggccaccaacgtcctccagct 524
             ||||||||||||| || ||||||| ||||||||| || || |||||||| ||||||||||
Sbjct: 41474 tccggttgattctcgcaagctccttctccagctcttccagaccaccaacctcctccagct 41415

                   
Query: 525   cctgca 530
             ||||||
Sbjct: 41414 cctgca 41409
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 465      tccggttgattctggcgagctcctgctccagctcgtcgaggccaccaacgtcctccagct 524
                ||||||||||||| || ||||||| ||||||||| || || |||||||| ||||||||||
Sbjct: 29132006 tccggttgattctcgcaagctccttctccagctcttccagaccaccaacctcctccagct 29131947

                      
Query: 525      cctgca 530
                ||||||
Sbjct: 29131946 cctgca 29131941
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>ref|XM_473611.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 930

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 465 tccggttgattctggcgagctcctgctccagctcgtcgaggccaccaacgtcctccagct 524
           ||||||||||||| || ||||||| ||||||||| || || |||||||| ||||||||||
Sbjct: 922 tccggttgattctcgcaagctccttctccagctcttccagaccaccaacctcctccagct 863

              
Query: 525 cct 527
           |||
Sbjct: 862 cct 860
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>dbj|AK060559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E08, full
            insert sequence
          Length = 1457

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 465  tccggttgattctggcgagctcctgctccagctcgtcgaggccaccaacgtcctccagct 524
            ||||||||||||| || ||||||| ||||||||| || || |||||||| ||||||||||
Sbjct: 1024 tccggttgattctcgcaagctccttctccagctcttccagaccaccaacctcctccagct 965

               
Query: 525  cct 527
            |||
Sbjct: 964  cct 962
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>gb|AY844956.1| Zea mays beta-carotene hydroxylase (HYD1) mRNA, complete cds
          Length = 1392

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 479  gcgagctcctgctccagctcgtcgaggccaccaacgtcctccagctcct 527
            ||||||||||  ||||||||||| |||||||| || |||||||||||||
Sbjct: 1012 gcgagctccttttccagctcgtccaggccaccgacctcctccagctcct 964
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>gb|AY844957.1| Zea mays beta-carotene hydroxylase (HYD3) gene, complete cds
          Length = 2400

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 494  agctcgtcgaggccaccaacgtcctccagctcctg 528
            |||||||| ||||||||||| ||||||||||||||
Sbjct: 2153 agctcgtccaggccaccaacctcctccagctcctg 2119
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>gb|BT018945.1| Zea mays clone Contig93.F mRNA sequence
          Length = 1119

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 494 agctcgtcgaggccaccaacgtcctccagctcct 527
           |||||||| ||||||||||| |||||||||||||
Sbjct: 886 agctcgtccaggccaccaacctcctccagctcct 853
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>gb|AY844958.1| Zea mays beta-carotene hydroxylase (HYD3) mRNA, complete cds
          Length = 1277

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 494  agctcgtcgaggccaccaacgtcctccagctcct 527
            |||||||| ||||||||||| |||||||||||||
Sbjct: 1011 agctcgtccaggccaccaacctcctccagctcct 978
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>gb|AY104495.1| Zea mays PCO148057 mRNA sequence
          Length = 736

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 494 agctcgtcgaggccaccaacgtcctccagctcct 527
           |||||||| ||||||||||| |||||||||||||
Sbjct: 466 agctcgtccaggccaccaacctcctccagctcct 433
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>gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complete sequence
          Length = 183263

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 322    caccatcaattaaatcaatatat 344
              |||||||||||||||||||||||
Sbjct: 166938 caccatcaattaaatcaatatat 166916
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>gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromosome 7, complete
             sequence
          Length = 145564

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 322   caccatcaattaaatcaatatat 344
             |||||||||||||||||||||||
Sbjct: 21507 caccatcaattaaatcaatatat 21529
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>gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, complete sequence
          Length = 175291

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 308    ctccccatgtccagcaccatca 329
              ||||||||||||||||||||||
Sbjct: 129144 ctccccatgtccagcaccatca 129123
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>ref|XM_512028.1| PREDICTED: Pan troglodytes similar to KIAA0802 (LOC455296), mRNA
          Length = 6133

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 481  gagctcctgctccagctcgtc 501
            |||||||||||||||||||||
Sbjct: 1557 gagctcctgctccagctcgtc 1537
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>gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, complete sequence
          Length = 184815

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 196   tgaaccatctgtgcttcttcctata 220
             ||||||||||||||||||| |||||
Sbjct: 88850 tgaaccatctgtgcttctttctata 88874
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>ref|NM_015210.1| Homo sapiens KIAA0802 (KIAA0802), mRNA
          Length = 5392

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 gagctcctgctccagctcgtc 501
           |||||||||||||||||||||
Sbjct: 673 gagctcctgctccagctcgtc 653
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>dbj|AK131528.1| Homo sapiens cDNA FLJ16757 fis, clone BRACE3026993
          Length = 5392

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 gagctcctgctccagctcgtc 501
           |||||||||||||||||||||
Sbjct: 673 gagctcctgctccagctcgtc 653
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>dbj|AK090691.1| Homo sapiens cDNA FLJ33372 fis, clone BRACE2005981
          Length = 3517

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 gagctcctgctccagctcgtc 501
           |||||||||||||||||||||
Sbjct: 745 gagctcctgctccagctcgtc 725
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>ref|NM_136618.3| Drosophila melanogaster CG8055-RA (CG8055), mRNA
          Length = 1265

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 484 ctcctgctccagctcgtcgag 504
           |||||||||||||||||||||
Sbjct: 623 ctcctgctccagctcgtcgag 603
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>gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone
             BACR10M14, complete sequence
          Length = 189757

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   ctcctgctccagctcgtcgag 504
             |||||||||||||||||||||
Sbjct: 70552 ctcctgctccagctcgtcgag 70572
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>dbj|AB018345.2| Homo sapiens mRNA for KIAA0802 protein, partial cds
          Length = 6009

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 481 gagctcctgctccagctcgtc 501
           |||||||||||||||||||||
Sbjct: 713 gagctcctgctccagctcgtc 693
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>gb|AY069131.1| Drosophila melanogaster GH13992 full insert cDNA
          Length = 1269

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 484 ctcctgctccagctcgtcgag 504
           |||||||||||||||||||||
Sbjct: 610 ctcctgctccagctcgtcgag 590
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>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete
             sequence
          Length = 243313

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   ctcctgctccagctcgtcgag 504
             |||||||||||||||||||||
Sbjct: 77394 ctcctgctccagctcgtcgag 77414
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>dbj|AP005205.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-91I8, complete
              sequence
          Length = 134463

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 326    atcaattaaatcaatatatag 346
              |||||||||||||||||||||
Sbjct: 119475 atcaattaaatcaatatatag 119495
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>dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-674N23, complete
              sequence
          Length = 171200

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 481    gagctcctgctccagctcgtc 501
              |||||||||||||||||||||
Sbjct: 151031 gagctcctgctccagctcgtc 151011
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>gb|M24392.1|MXARTR M.xanthus reverse transcriptase gene, complete cds
          Length = 2176

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 268 caccgccaccacctgaccatc 288
           |||||||||||||||||||||
Sbjct: 98  caccgccaccacctgaccatc 78
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>gb|K02075.1|MXARSSMS Myxococcus xanthus satellite multicopy single-stranded DNA (msDNA)
          Length = 674

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 caccgccaccacctgaccatc 288
           |||||||||||||||||||||
Sbjct: 576 caccgccaccacctgaccatc 596
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>ref|XM_367779.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG07690.4) partial mRNA
          Length = 2583

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 480  cgagctcctgctccagctcg 499
            ||||||||||||||||||||
Sbjct: 2286 cgagctcctgctccagctcg 2305
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>ref|NM_010709.1| Mus musculus ligatin (Lgtn), mRNA
          Length = 2094

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 582 cgccatgtccacagctcagatgct 605
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>ref|XM_653669.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1157.2), mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 attctggcgagctcctgctc 492
           ||||||||||||||||||||
Sbjct: 374 attctggcgagctcctgctc 355
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>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence
          Length = 241579

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 436    cgccatgtccagagctcagatgct 459
              ||||||||||| ||||||||||||
Sbjct: 117658 cgccatgtccacagctcagatgct 117681
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>ref|XM_988475.1| PREDICTED: Mus musculus gene model 24, (NCBI) (Gm24), mRNA
          Length = 1958

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  ccatgtccagagctcagatg 457
            ||||||||||||||||||||
Sbjct: 1025 ccatgtccagagctcagatg 1044
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>ref|XM_906408.2| PREDICTED: Mus musculus gene model 24, (NCBI) (Gm24), mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  ccatgtccagagctcagatg 457
            ||||||||||||||||||||
Sbjct: 1025 ccatgtccagagctcagatg 1044
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>ref|XM_111442.5| PREDICTED: Mus musculus gene model 24, (NCBI) (Gm24), mRNA
          Length = 1956

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  ccatgtccagagctcagatg 457
            ||||||||||||||||||||
Sbjct: 1025 ccatgtccagagctcagatg 1044
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>ref|XM_923807.2| PREDICTED: Mus musculus RIKEN cDNA A530050D06 gene, transcript
            variant 10 (A530050D06Rik), mRNA
          Length = 2106

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 509  ccaacgtcctccagctcctg 528
            ||||||||||||||||||||
Sbjct: 1079 ccaacgtcctccagctcctg 1060
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>ref|XM_915536.2| PREDICTED: Mus musculus RIKEN cDNA A530050D06 gene, transcript
            variant 6 (A530050D06Rik), mRNA
          Length = 2732

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 509  ccaacgtcctccagctcctg 528
            ||||||||||||||||||||
Sbjct: 1705 ccaacgtcctccagctcctg 1686
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>ref|XM_203596.7| PREDICTED: Mus musculus RIKEN cDNA A530050D06 gene, transcript
            variant 1 (A530050D06Rik), mRNA
          Length = 2732

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 509  ccaacgtcctccagctcctg 528
            ||||||||||||||||||||
Sbjct: 1705 ccaacgtcctccagctcctg 1686
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>ref|XM_542991.2| PREDICTED: Canis familiaris similar to Protein-glutamine
           gamma-glutamyltransferase (Tissue transglutaminase)
           (TGase C) (TGC) (TG(C)) (Tranglutaminase 2) (TGase-H)
           (LOC485867), mRNA
          Length = 2402

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 caccgccaccacctgaccat 287
           ||||||||||||||||||||
Sbjct: 47  caccgccaccacctgaccat 66
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 480     cgagctcctgctccagctcgtcga 503
               |||||||||||||| |||||||||
Sbjct: 1889369 cgagctcctgctcccgctcgtcga 1889392
to top
>gb|BC023709.1| Mus musculus ligatin, mRNA (cDNA clone IMAGE:5346162), containing
           frame-shift errors
          Length = 2495

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 616 cgccatgtccacagctcagatgct 639
to top
>gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete sequence
          Length = 233153

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   ccaacgtcctccagctcctg 528
             ||||||||||||||||||||
Sbjct: 92749 ccaacgtcctccagctcctg 92768
to top
>gb|BC025036.1| Mus musculus ligatin, mRNA (cDNA clone MGC:36900 IMAGE:4935223),
           complete cds
          Length = 1958

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 566 cgccatgtccacagctcagatgct 589
to top
>gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, complete sequence
          Length = 269155

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 602   tcacttggccagtggtcaca 621
             ||||||||||||||||||||
Sbjct: 81332 tcacttggccagtggtcaca 81351
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 476    ctggcgagctcctgctccagctcg 499
              ||||||||||||||| ||||||||
Sbjct: 113654 ctggcgagctcctgcaccagctcg 113677
to top
>gb|AC099558.2| Homo sapiens chromosome 3 clone RP11-680P23, complete sequence
          Length = 180049

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     gcctatataagaacaagaca 113
              ||||||||||||||||||||
Sbjct: 157340 gcctatataagaacaagaca 157321
to top
>gb|AF508802.1| Homo sapiens bac54tar, complete sequence
          Length = 97274

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   tccccatgtccagcaccatc 328
             ||||||||||||||||||||
Sbjct: 48868 tccccatgtccagcaccatc 48849
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     acaccgccaccacctgacca 286
               ||||||||||||||||||||
Sbjct: 2184785 acaccgccaccacctgacca 2184804



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     acaccgccaccacctgacca 286
               ||||||||||||||||||||
Sbjct: 2181647 acaccgccaccacctgacca 2181666
to top
>emb|AL589879.21| Mouse DNA sequence from clone RP23-38E20 on chromosome 13 Contains the
              genes for H2b histone family member A, two H2a, two H4 and
              an H2b histone family member, a serine/threonine protein
              kinase pseudogene, a novel pseudogene, a novel gene
              (4930500C15Rik), the gene for a novel KRAB box and C2H2
              Zinc Finger containing protein, a ribosomal protein L21
              (RPL21) pseudogene, a TU mitochondrial translation
              elongation factor (tufa) pseudogene, the 5' end of the gene
              for a novel protein similar to nuclear envelope pore
              membrane protein POM121 and four CpG islands, complete
              sequence
          Length = 182817

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ccatgtccagagctcagatg 457
              ||||||||||||||||||||
Sbjct: 182372 ccatgtccagagctcagatg 182391
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>emb|AL606968.9| Mouse DNA sequence from clone RP23-287K23 on chromosome 13 Contains
            part of the gene for a novel protein similar to a nuclear
            envelope pore membrane protein POM121, complete sequence
          Length = 3994

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  ccatgtccagagctcagatg 457
            ||||||||||||||||||||
Sbjct: 1555 ccatgtccagagctcagatg 1574
to top
>gb|AC112169.2| Homo sapiens chromosome 5 clone CTD-2016H11, complete sequence
          Length = 168329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tccccatgtccagcaccatc 328
              ||||||||||||||||||||
Sbjct: 116777 tccccatgtccagcaccatc 116796
to top
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence
          Length = 206537

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gcctatataagaacaagaca 113
              ||||||||||||||||||||
Sbjct: 166853 gcctatataagaacaagaca 166872
to top
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     taaacaaaaatgtggacgtg 152
               ||||||||||||||||||||
Sbjct: 1997385 taaacaaaaatgtggacgtg 1997404
to top
>gb|AC010996.9| Homo sapiens chromosome 10 clone RP11-118J22, complete sequence
          Length = 169512

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   atcaattaaatcaatatata 345
             ||||||||||||||||||||
Sbjct: 96143 atcaattaaatcaatatata 96162
to top
>dbj|AK133022.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930555F05 product:hypothetical protein,
            full insert sequence
          Length = 1945

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  ccatgtccagagctcagatg 457
            ||||||||||||||||||||
Sbjct: 1014 ccatgtccagagctcagatg 1033
to top
>dbj|AK139052.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730006G16 product:ligatin, full
           insert sequence
          Length = 1976

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 610 cgccatgtccacagctcagatgct 633
to top
>dbj|AK161269.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4922504I18 product:ligatin, full insert
           sequence
          Length = 1963

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 593 cgccatgtccacagctcagatgct 616
to top
>ref|NM_175486.1| Mus musculus RIKEN cDNA 6430571L13 gene (6430571L13Rik), mRNA
          Length = 2558

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 agctcctgctccagctcgtc 501
           ||||||||||||||||||||
Sbjct: 747 agctcctgctccagctcgtc 728
to top
>dbj|AK171115.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630225E24
           product:ligatin, full insert sequence
          Length = 1952

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 588 cgccatgtccacagctcagatgct 611
to top
>dbj|AK168120.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730058L12 product:ligatin, full insert sequence
          Length = 1946

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 576 cgccatgtccacagctcagatgct 599
to top
>dbj|AK166085.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730037B09 product:ligatin, full insert
           sequence
          Length = 1989

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 622 cgccatgtccacagctcagatgct 645
to top
>dbj|AK167980.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730044O07 product:ligatin, full insert sequence
          Length = 1971

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 606 cgccatgtccacagctcagatgct 629
to top
>dbj|AK170448.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630103O13
           product:ligatin, full insert sequence
          Length = 1988

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 622 cgccatgtccacagctcagatgct 645
to top
>dbj|AK170252.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630038B08
           product:ligatin, full insert sequence
          Length = 2026

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 637 cgccatgtccacagctcagatgct 660
to top
>dbj|AK043338.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730086M16 product:similar to
           G20 PROTEIN [Homo sapiens], full insert sequence
          Length = 1263

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 agctcctgctccagctcgtc 501
           ||||||||||||||||||||
Sbjct: 786 agctcctgctccagctcgtc 767
to top
>dbj|AK085251.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630001B03 product:similar to G20 PROTEIN
           [Homo sapiens], full insert sequence
          Length = 1226

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 agctcctgctccagctcgtc 501
           ||||||||||||||||||||
Sbjct: 777 agctcctgctccagctcgtc 758
to top
>dbj|AK047005.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930010L13 product:ligatin, full
           insert sequence
          Length = 3281

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 605 cgccatgtccacagctcagatgct 628
to top
>dbj|AK036154.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630042D03 product:ligatin, full
           insert sequence
          Length = 3435

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 606 cgccatgtccacagctcagatgct 629
to top
>dbj|AK032501.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430571L13 product:similar to
           G20 PROTEIN [Homo sapiens], full insert sequence
          Length = 1510

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 agctcctgctccagctcgtc 501
           ||||||||||||||||||||
Sbjct: 753 agctcctgctccagctcgtc 734
to top
>dbj|AK032358.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430526F17 product:similar to
           G20 PROTEIN [Homo sapiens], full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 482 agctcctgctccagctcgtc 501
           ||||||||||||||||||||
Sbjct: 747 agctcctgctccagctcgtc 728
to top
>dbj|AK046539.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length
           enriched library, clone:B330020B16 product:ligatin, full
           insert sequence
          Length = 1986

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 622 cgccatgtccacagctcagatgct 645
to top
>dbj|AK083638.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030057O03 product:ligatin, full
           insert sequence
          Length = 1988

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 570 cgccatgtccacagctcagatgct 593
to top
>dbj|AK034115.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330157N06 product:ligatin, full
           insert sequence
          Length = 2094

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 582 cgccatgtccacagctcagatgct 605
to top
>dbj|AK082748.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330002F15 product:ligatin, full insert sequence
          Length = 2015

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 625 cgccatgtccacagctcagatgct 648
to top
>dbj|AK078472.1| Mus musculus 12 days embryo female mullerian duct includes
           surrounding region cDNA, RIKEN full-length enriched
           library, clone:6820404L22 product:ligatin, full insert
           sequence
          Length = 1210

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 524 cgccatgtccacagctcagatgct 547
to top
>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tacacagaagagtagtttct 92
              ||||||||||||||||||||
Sbjct: 134748 tacacagaagagtagtttct 134729
to top
>gb|BC089617.1| Mus musculus cDNA clone IMAGE:6766474
          Length = 2563

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 509  ccaacgtcctccagctcctg 528
            ||||||||||||||||||||
Sbjct: 1532 ccaacgtcctccagctcctg 1513
to top
>gb|AC005509.1|AC005509 Homo sapiens chromosome 4 clone B200N5 map 4q25, complete sequence
          Length = 143391

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   tggcgagctcctgctccagc 496
             ||||||||||||||||||||
Sbjct: 30694 tggcgagctcctgctccagc 30713
to top
>gb|BC023353.1| Mus musculus RIKEN cDNA A530050D06 gene, mRNA (cDNA clone
           IMAGE:5040222), with apparent retained intron
          Length = 1523

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 509 ccaacgtcctccagctcctg 528
           ||||||||||||||||||||
Sbjct: 490 ccaacgtcctccagctcctg 471
to top
>gb|U58337.1|MMU58337 Mus musculus ligatin (Lgtn) mRNA, partial cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 436 cgccatgtccagagctcagatgct 459
           ||||||||||| ||||||||||||
Sbjct: 495 cgccatgtccacagctcagatgct 518
to top
>emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chromosome 9, complete
              sequence
          Length = 197912

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 482    agctcctgctccagctcgtc 501
              ||||||||||||||||||||
Sbjct: 157811 agctcctgctccagctcgtc 157792
to top
>emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on chromosome 2, complete
             sequence
          Length = 165908

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tcatgaaccatctgtgcttc 212
             ||||||||||||||||||||
Sbjct: 97688 tcatgaaccatctgtgcttc 97707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,487,411
Number of Sequences: 3902068
Number of extensions: 5487411
Number of successful extensions: 198320
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198044
Number of HSP's gapped (non-prelim): 276
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top