| Clone Name | rbaal37b13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 564 Score = 323 bits (163), Expect = 4e-85 Identities = 235/259 (90%) Strand = Plus / Minus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 360 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 301 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 300 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 241 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 240 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 181 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 180 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 121 Query: 566 cttgttcttgggagccatg 584 ||| |||| |||||||||| Sbjct: 120 cttcttctggggagccatg 102
>dbj|AK099180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103B06, full insert sequence Length = 686 Score = 323 bits (163), Expect = 4e-85 Identities = 235/259 (90%) Strand = Plus / Minus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 398 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 339 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 338 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 279 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 278 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 219 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 218 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 159 Query: 566 cttgttcttgggagccatg 584 ||| |||| |||||||||| Sbjct: 158 cttcttctggggagccatg 140
>dbj|AK071353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094M23, full insert sequence Length = 754 Score = 323 bits (163), Expect = 4e-85 Identities = 235/259 (90%) Strand = Plus / Minus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 414 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 355 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 354 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 295 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 294 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 235 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 234 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 175 Query: 566 cttgttcttgggagccatg 584 ||| |||| |||||||||| Sbjct: 174 cttcttctggggagccatg 156
>gb|AY107731.1| Zea mays PCO069957 mRNA sequence Length = 925 Score = 307 bits (155), Expect = 2e-80 Identities = 305/355 (85%) Strand = Plus / Minus Query: 230 ggagtcgtccggcacgaagacgaccgtggctatggaggcgacgagcagcggcagcgacag 289 ||||||||| ||||||| ||| |||| ||| | || ||| ||||| ||||||||||| | Sbjct: 555 ggagtcgtcgggcacgacgaccaccgcggcgacggcggccacgaggagcggcagcgagat 496 Query: 290 cgatgcgagcacggccggggacactgtggctgcgctctcgacgaggctgaggagtcccag 349 || ||||| |||| ||||||| || ||| |||||||||||||||| || ||||| Sbjct: 495 ggaggcgaggacggacggggacgtccccgccgcggtctcgacgaggctgagcaggcccag 436 Query: 350 gtcctcggccttggagagcagtccgagcttctccagcgaggagagcgtgacgccgagctc 409 ||||||||||||||||||||| || ||||||||||||||||||||||| | ||| ||||| Sbjct: 435 gtcctcggccttggagagcaggcccagcttctccagcgaggagagcgtcaggcccagctc 376 Query: 410 ctccgccttggacagcagccctgccttctcgacggtgctcagcaccttgcgcttctccag 469 ||| |||||||||||||| || |||||||| ||||||||||||||||||||| |||||| Sbjct: 375 ctcggccttggacagcaggccggccttctccacggtgctcagcaccttgcgccgctccag 316 Query: 470 cttcttgaacacgtccaccgacgcctcctcgctcccctccgcgaagatccccgcgccgaa 529 |||||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||| Sbjct: 315 cttcttgaacacgtccacggacacctcctcgctgccctccgcgaagatgcccgcgccgaa 256 Query: 530 ccactgcttggaccacccatcgtcgtacttgttcaccttgttcttgggagccatg 584 ||||||||| ||||| | |||||||| ||||||||| || ||||| |||||| Sbjct: 255 ccactgcttcgaccagctctcgtcgtagcggttcaccttctttttgggcgccatg 201 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 132 tcctgcagtccatcgagcacgacagagccgacgaacagccc 172 |||||||| ||| |||||||||||||||| ||||||||||| Sbjct: 653 tcctgcaggccagcgagcacgacagagcccacgaacagccc 613
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 305 bits (154), Expect = 9e-80 Identities = 220/242 (90%) Strand = Plus / Plus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 22750998 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 22751057 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 22751058 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 22751117 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 22751118 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 22751177 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 22751178 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 22751237 Query: 566 ct 567 || Sbjct: 22751238 ct 22751239
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 305 bits (154), Expect = 9e-80 Identities = 220/242 (90%) Strand = Plus / Plus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 127710 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 127769 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 127770 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 127829 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 127830 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 127889 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 127890 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 127949 Query: 566 ct 567 || Sbjct: 127950 ct 127951
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 305 bits (154), Expect = 9e-80 Identities = 220/242 (90%) Strand = Plus / Plus Query: 326 ctcgacgaggctgaggagtcccaggtcctcggccttggagagcagtccgagcttctccag 385 |||||||||||||||||| || |||||||||||||||||||| || ||||||| ||| || Sbjct: 68387 ctcgacgaggctgaggaggccgaggtcctcggccttggagaggaggccgagctcctcgag 68446 Query: 386 cgaggagagcgtgacgccgagctcctccgccttggacagcagccctgccttctcgacggt 445 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || Sbjct: 68447 cgaggagagcgtgacgccgagctcctccgccctggacagcagcccggccttctccaccgt 68506 Query: 446 gctcagcaccttgcgcttctccagcttcttgaacacgtccaccgacgcctcctcgctccc 505 |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct: 68507 gctcagcaccttccgcctctccagcttcttgaacacgtccacctccacctcctcgctccc 68566 Query: 506 ctccgcgaagatccccgcgccgaaccactgcttggaccacccatcgtcgtacttgttcac 565 ||||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||||| Sbjct: 68567 ctccgcgaatatccccgccccgaaccactgcttcgaccacttctcgtcgtacctgttcac 68626 Query: 566 ct 567 || Sbjct: 68627 ct 68628
>ref|NM_106132.2| Arabidopsis thaliana CPK30; calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase AT1G74740 (CPK30) mRNA, complete cds Length = 2550 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 2475 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 2518
>ref|NM_106131.2| Arabidopsis thaliana unknown protein AT1G74730 mRNA, complete cds Length = 1178 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 348 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 305
>gb|AF386985.1|AF386985 Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 784 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 315 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 272
>gb|AY088988.1| Arabidopsis thaliana clone 12408 mRNA, complete sequence Length = 812 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 348 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 305
>gb|BT002152.1| Arabidopsis thaliana Unknown protein (At1g74730) mRNA, complete cds Length = 639 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Minus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 284 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 241
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence Length = 115721 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 435 ttctcgacggtgctcagcaccttgcgcttctccagcttcttgaa 478 ||||| ||| |||||| ||| || |||||||||||||||||||| Sbjct: 95512 ttctcaacgttgctcaacacttttcgcttctccagcttcttgaa 95555
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 251 gaccgtggctatggaggcgacgagcagcggc 281 ||||||||| ||| ||||||||||||||||| Sbjct: 75098 gaccgtggcgatgaaggcgacgagcagcggc 75068
>ref|XM_505854.1| Yarrowia lipolytica CLIB122, YALI0F25091g predicted mRNA Length = 3024 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 455 cttgcgcttctccagcttcttg 476 |||||||||||||||||||||| Sbjct: 2694 cttgcgcttctccagcttcttg 2673
>ref|NM_137196.1| Drosophila melanogaster CG12964-RA (CG12964), mRNA Length = 3408 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 ttgcgcttctccagcttcttgaacacgtcc 485 ||||||| |||||||| ||||||||||||| Sbjct: 2375 ttgcgctgctccagctccttgaacacgtcc 2346
>gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, region 51F-52A, BAC clone BACR03D24, complete sequence Length = 158402 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 456 ttgcgcttctccagcttcttgaacacgtcc 485 ||||||| |||||||| ||||||||||||| Sbjct: 137967 ttgcgctgctccagctccttgaacacgtcc 137996
>emb|BX841924.1|CNS09Y5J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 757 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 445 tgctcagcaccttgcgcttctccagcttcttgaa 478 |||||| ||| || |||||||||||||||||||| Sbjct: 325 tgctcaacacttttcgcttctccagcttcttgaa 292
>gb|BT024280.1| Drosophila melanogaster IP14311 full insert cDNA Length = 3936 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 ttgcgcttctccagcttcttgaacacgtcc 485 ||||||| |||||||| ||||||||||||| Sbjct: 2577 ttgcgctgctccagctccttgaacacgtcc 2548
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 456 ttgcgcttctccagcttcttgaacacgtcc 485 ||||||| |||||||| ||||||||||||| Sbjct: 861 ttgcgctgctccagctccttgaacacgtcc 890
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 456 ttgcgcttctccagcttcttgaacacgtcc 485 ||||||| |||||||| ||||||||||||| Sbjct: 78219 ttgcgctgctccagctccttgaacacgtcc 78248
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 455 cttgcgcttctccagcttcttg 476 |||||||||||||||||||||| Sbjct: 3243461 cttgcgcttctccagcttcttg 3243440
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 gtgacgccgagctcctccgcc 416 ||||||||||||||||||||| Sbjct: 185352 gtgacgccgagctcctccgcc 185332
>emb|AL023096.1|HS398I9 Human DNA sequence from clone RP3-398I9 on chromosome 1p34.3-36.13 Contains the 3' end of the RUNX3 gene for runt-related transcription factor 3 and a CpG island, complete sequence Length = 95241 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 556 acttgttcaccttgttcttgg 576 ||||||||||||||||||||| Sbjct: 31709 acttgttcaccttgttcttgg 31729
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 tcgacggtgctcagcaccttg 458 ||||||||||||||||||||| Sbjct: 3745595 tcgacggtgctcagcaccttg 3745615
>gb|AC166652.6| Mus musculus chromosome 8, clone RP24-129F24, complete sequence Length = 164098 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 492 gcctcctcgctcccctccgcgaag 515 |||||||||||||||||| ||||| Sbjct: 134415 gcctcctcgctcccctccccgaag 134392
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ttcaccttgttcttgggagc 580 |||||||||||||||||||| Sbjct: 132126 ttcaccttgttcttgggagc 132145
>ref|NM_004745.3| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2), mRNA Length = 10101 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 1984 gagctcctccgccttggaca 1965
>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence Length = 145575 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ttcaccttgttcttgggagc 580 |||||||||||||||||||| Sbjct: 137227 ttcaccttgttcttgggagc 137208
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cagcggcagcgacagcgatg 294 |||||||||||||||||||| Sbjct: 7697 cagcggcagcgacagcgatg 7716
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gccgagctcctccgccttgg 420 |||||||||||||||||||| Sbjct: 1518583 gccgagctcctccgccttgg 1518564
>ref|XM_870197.1| PREDICTED: Bos taurus hypothetical protein LOC617871 (LOC617871), mRNA Length = 2508 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 agcagcggcagcgacagcga 292 |||||||||||||||||||| Sbjct: 742 agcagcggcagcgacagcga 761
>ref|NM_025106.2| Homo sapiens splA/ryanodine receptor domain and SOCS box containing 1 (SPSB1), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 97 tcctcggccttggagagcag 116
>gb|BC015711.1| Homo sapiens splA/ryanodine receptor domain and SOCS box containing 1, mRNA (cDNA clone MGC:16798 IMAGE:3916157), complete cds Length = 3081 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 97 tcctcggccttggagagcag 116
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 ccttgcgcttctccagcttc 473 |||||||||||||||||||| Sbjct: 128505 ccttgcgcttctccagcttc 128524
>gb|AC124444.4| Mus musculus BAC clone RP24-185P7 from chromosome 7, complete sequence Length = 184996 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 510 gcgaagatccccgcgccgaaccac 533 ||||||| |||||||||||||||| Sbjct: 136150 gcgaagagccccgcgccgaaccac 136127
>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence Length = 127374 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 40788 gagctcctccgccttggaca 40807
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 510 gcgaagatccccgcgccgaaccac 533 ||||||| |||||||||||||||| Sbjct: 216526 gcgaagagccccgcgccgaaccac 216549
>gb|AC121874.2| Mus musculus BAC clone RP24-124K16 from 18, complete sequence Length = 164190 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tatcctactacaaaacaaac 97 |||||||||||||||||||| Sbjct: 98457 tatcctactacaaaacaaac 98476
>gb|AC092688.3| Homo sapiens BAC clone RP11-803A21 from 7, complete sequence Length = 53249 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 ttctccagcttcttgaacac 481 |||||||||||||||||||| Sbjct: 18986 ttctccagcttcttgaacac 18967
>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence Length = 165071 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 ttctccagcttcttgaacac 481 |||||||||||||||||||| Sbjct: 102542 ttctccagcttcttgaacac 102523
>emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in linkage group 9, complete sequence Length = 168689 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 actacaaaacaaacatatac 103 |||||||||||||||||||| Sbjct: 97510 actacaaaacaaacatatac 97529
>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence Length = 135139 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aaaacaaacatatactccat 108 |||||||||||||||||||| Sbjct: 104894 aaaacaaacatatactccat 104913
>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence Length = 151329 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 75434 gagctcctccgccttggaca 75415
>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence Length = 261151 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 243817 gagctcctccgccttggaca 243798
>emb|AL008734.10|HS324M8 Human DNA sequence from clone RP3-324M8 on chromosome 1p36.2-36.3 Contains the 5' end of the gene for a novel SPRY domain containing protein and a CpG island, complete sequence Length = 85116 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 73614 tcctcggccttggagagcag 73595
>ref|XM_963055.1| PREDICTED: Tribolium castaneum similar to CG32067-PC, isoform C (LOC656529), mRNA Length = 1755 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 ctccgcgaagatccccgcgccgaa 529 ||||||||||||| |||||||||| Sbjct: 352 ctccgcgaagatctccgcgccgaa 375
>ref|XM_966193.1| PREDICTED: Tribolium castaneum similar to Mothers against dpp protein (LOC659927), mRNA Length = 1805 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 ccttgcgcttctccagcttcttga 477 |||||||||||| ||||||||||| Sbjct: 220 ccttgcgcttcttcagcttcttga 197
>ref|XM_965940.1| PREDICTED: Tribolium castaneum similar to Mothers against dpp protein (LOC659654), mRNA Length = 1808 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 ccttgcgcttctccagcttcttga 477 |||||||||||| ||||||||||| Sbjct: 220 ccttgcgcttcttcagcttcttga 197
>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 20/20 Length = 88037 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gccggggacactgtggctgc 322 |||||||||||||||||||| Sbjct: 32721 gccggggacactgtggctgc 32702
>emb|BX088715.9| Zebrafish DNA sequence from clone CH211-194B1 in linkage group 3, complete sequence Length = 153585 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 agcagtggtcgactggtggtgtat 80 ||||||||| |||||||||||||| Sbjct: 23301 agcagtggtggactggtggtgtat 23278
>gb|AY271631.1| Amycolatopsis lactamdurans isolate AAL17 putative NRPS gene, partial cds Length = 684 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 caggtcctcggccttggagagcag 370 |||||||||| ||||||||||||| Sbjct: 107 caggtcctcgaccttggagagcag 84
>gb|AF119818.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2) mRNA, alternatively spliced, partial cds Length = 10141 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 2021 gagctcctccgccttggaca 2002
>gb|AF119817.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2 (DLGAP2) mRNA, alternatively spliced, complete cds Length = 10126 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 2006 gagctcctccgccttggaca 1987
>gb|AY056828.1| Oryza sativa beta-glucosidase isozyme 2 precursor, mRNA, complete cds Length = 1797 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ttcaccttgttcttgggagc 580 |||||||||||||||||||| Sbjct: 43 ttcaccttgttcttgggagc 62
>emb|CR609804.1| full-length cDNA clone CS0DI075YP10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 3039 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 129 tcctcggccttggagagcag 148
>gb|AF009204.1|AF009204 Homo sapiens PSD-95/SAP90-associated protein-2 mRNA, partial cds Length = 3412 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 1834 gagctcctccgccttggaca 1815
>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence Length = 123340 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aaaacaaacatatactccat 108 |||||||||||||||||||| Sbjct: 114816 aaaacaaacatatactccat 114797
>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence Length = 87338 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cgagcagcggcagcgacagc 290 |||||||||||||||||||| Sbjct: 66298 cgagcagcggcagcgacagc 66279
>ref|XM_571720.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2035 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cagcggcagcgacagcgatg 294 |||||||||||||||||||| Sbjct: 1885 cagcggcagcgacagcgatg 1904
>ref|XM_571719.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2068 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cagcggcagcgacagcgatg 294 |||||||||||||||||||| Sbjct: 1918 cagcggcagcgacagcgatg 1937
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ccaccgacgcctcctcgctc 503 |||||||||||||||||||| Sbjct: 10692835 ccaccgacgcctcctcgctc 10692816
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ttcaccttgttcttgggagc 580 |||||||||||||||||||| Sbjct: 18739375 ttcaccttgttcttgggagc 18739356
>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04, complete sequence Length = 188209 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ccaccgacgcctcctcgctc 503 |||||||||||||||||||| Sbjct: 92062 ccaccgacgcctcctcgctc 92043
>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence Length = 226343 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 actacaaaacaaacatatac 103 |||||||||||||||||||| Sbjct: 168084 actacaaaacaaacatatac 168103
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gccggggacactgtggctgc 322 |||||||||||||||||||| Sbjct: 4529728 gccggggacactgtggctgc 4529709
>emb|AJ234696.1|HVU234696 Hordeum vulgare genomic DNA fragment; clone MWG0980.rev Length = 464 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gacggtgctcagcaccttgc 459 |||||||||||||||||||| Sbjct: 462 gacggtgctcagcaccttgc 443
>dbj|AK026046.1| Homo sapiens cDNA: FLJ22393 fis, clone HRC07880 Length = 1648 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 143 tcctcggccttggagagcag 162
>dbj|AK066710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074A20, full insert sequence Length = 1811 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ttcaccttgttcttgggagc 580 |||||||||||||||||||| Sbjct: 71 ttcaccttgttcttgggagc 90
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gccggggacactgtggctgc 322 |||||||||||||||||||| Sbjct: 4736645 gccggggacactgtggctgc 4736626
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aggcgacgagcagcggcagcgaca 288 ||||| |||||||||||||||||| Sbjct: 4554185 aggcggcgagcagcggcagcgaca 4554162
>gb|U87679.1|HGU87679 Hepatitis G virus isolate E3 envelope protein 2 (E2) gene, partial cds Length = 400 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gacactgtggctgcgctctc 328 |||||||||||||||||||| Sbjct: 361 gacactgtggctgcgctctc 380
>dbj|AB209559.1| Homo sapiens mRNA for SPRY domain-containing SOCS box protein SSB-1 variant protein Length = 1231 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcctcggccttggagagcag 370 |||||||||||||||||||| Sbjct: 102 tcctcggccttggagagcag 121
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence Length = 217343 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 gcctcctcgctcccctccgcgaag 515 |||||||||||||||||| ||||| Sbjct: 149543 gcctcctcgctcccctccccgaag 149566
>dbj|AB000275.1| Homo sapiens mRNA for DAP-2, partial cds Length = 1740 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gagctcctccgccttggaca 423 |||||||||||||||||||| Sbjct: 576 gagctcctccgccttggaca 557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,922,856 Number of Sequences: 3902068 Number of extensions: 3922856 Number of successful extensions: 90072 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89505 Number of HSP's gapped (non-prelim): 566 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)