ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLG_HHV2H (P13290) Glycoprotein G 32 2.4
2IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (... 32 2.4
3ZN490_HUMAN (Q9ULM2) Zinc finger protein 490 31 3.2
4MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc an... 30 5.4
5GP111_HUMAN (Q8IZF7) Probable G-protein coupled receptor 111 (G-... 30 7.1

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 31/104 (29%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
 Frame = +1

Query: 229 PPACRTEPHPRPATPRLM------CVPSPVEVEAMSCG----AALPPVHYPGKGQWXXXX 378
           PP   T   PRP TP           P PV   A         A PP   PG        
Sbjct: 456 PPPTSTHATPRPTTPGPQTTPPGPATPGPVGASAAPTADSPLTASPPATAPGP----SAA 511

Query: 379 XXXXXXXXXXXGTRGTARW--RSP*QY-HHQVDPSPTAPRMLPP 501
                      GTRGTAR     P  + H   D  P +P   PP
Sbjct: 512 NVSVAATTATPGTRGTARTPPTDPKTHPHGPADAPPGSPAPPPP 555



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>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 918

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 33  DTIILVH-----QESPETSMEFTMYAKRGATTSVHRAMSPFMCGFILTTLMSGLWCGRSR 197
           DT+ +VH     +E  +   EFT    + A   +   + P    F+LTTL+  L+C   R
Sbjct: 584 DTLYMVHMAAYTEEGGKDGPEFTFTTLKFAQGEIEAIVVPVCLAFLLTTLLGVLFCFNKR 643



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>ZN490_HUMAN (Q9ULM2) Zinc finger protein 490|
          Length = 529

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 470 HHQQRPECCHHYDLKLHRCPDC 535
           H +Q+P  CH Y  K H+C +C
Sbjct: 178 HTEQKPNECHEYGEKPHKCKEC 199



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>MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 591

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 226 QPPACRTE---PHPRPATPRLMCVPSPVEVEAMSCGAALPPVH 345
           QPP  +T    P P PATP    VP+PV + A + G +    H
Sbjct: 404 QPPQQKTPLPGPPPPPATPTQTLVPAPVHLVATAGGGSTVIAH 446



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>GP111_HUMAN (Q8IZF7) Probable G-protein coupled receptor 111 (G-protein coupled|
           receptor PGR20)
          Length = 708

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 607 FKLDPHTGDISRKVTGRSSKVDEKTIRTPVKLQIIVVA--TFGALLVMDQLDDDTAMGFA 434
           F       D S +VTGR     ++  + P   Q+I +A  T GA+L    L++ T  G  
Sbjct: 306 FTFSMRINDTSNEVTGRVLISRDELRKVPSPSQVISIAFPTIGAILEASLLENVTVNGLV 365

Query: 433 ISQFL 419
           +S  L
Sbjct: 366 LSAIL 370


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,860,929
Number of Sequences: 219361
Number of extensions: 1903113
Number of successful extensions: 5596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5583
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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