>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 243 RRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQ-KTDNGS 124
           RRP   PPRA SRR    H      +R PS+++  + D GS
Sbjct: 498 RRPRSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGS 538

>DBH_MYCSM (Q9ZHC5) DNA-binding protein HU homolog (Histone-like protein)|
           (Hlp)
          Length = 208

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = -1

Query: 340 ASLKAVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKS 161
           A   A K    +   K P K +ATK PAK + T                  + P K+  +
Sbjct: 139 AKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPAKKAAA 198

Query: 160 TKPAAAK 140
            K  A K
Sbjct: 199 KKAPAKK 205



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = -1

Query: 328 AVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKSTKPA 149
           A K    +   K P K +ATK PAK + T                  + P K+  +  PA
Sbjct: 134 AKKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPA 193

>H1_ONCMY (P06350) Histone H1 [Contains: Oncorhyncin II]|
          Length = 206

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 385 ASEPSSAGTEQHIRMASLKAVKPTGLEGQAKEP-TKVSATKGPAKLSNTXXXXXXXXXXX 209
           A +P++A   +  ++A+ KAV       +AK+P T   A K P K+              
Sbjct: 122 AKKPAAAKKPK--KVAAKKAVAAKKSPKKAKKPATPKKAAKSPKKVKKPAAAAKKAA--- 176

Query: 208 XXXXXKPREPKKRVKSTKPAAAK 140
                  + PKK  K+ KP AAK
Sbjct: 177 -------KSPKKATKAAKPKAAK 192

>HNF1A_RAT (P15257) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1)
          Length = 628

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 397 ATA*ASE-PSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 260
           AT+ A+E PSS+G       A+L  V PTGLE     + E   VSAT GP
Sbjct: 326 ATSEAAEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375

>HNF1A_MOUSE (P22361) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1)
          Length = 628

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 397 ATA*ASE-PSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 260
           AT+ A+E PSS+G       A+L  V PTGLE     + E   VSAT GP
Sbjct: 326 ATSEAAEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375

>EX7L_ZYMMO (Q9FDL4) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 544

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 252 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSRRTELA 106
           + T RP+    R A  +   S   L  G R   Q+QQK DN +RR + A
Sbjct: 362 AATLRPALLQARIAREQARLSACRLPTGQRLVIQEQQKLDNVTRRLKQA 410

>MPIP_YEAST (P23748) M-phase inducer phosphatase (EC 3.1.3.48) (Mitosis|
           initiation protein MIH1) (Mitotic inducer homolog)
          Length = 554

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 252 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQ 148
           S++R+PS      +SRR+ +  G + R SR  SQ+
Sbjct: 156 SLSRKPSMNSSSNSSRRVQRQDGKIPRSSRKSSQK 190

>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 495

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 234 SQQPPRAASRRLSQSHGSLRRGSRAPS-QQQQKTDNGSRRTELA*LSPWCYELYMNPA 64
           S    RAASRR S+S G  RRG   P      +   G  R E A ++ W  + Y + A
Sbjct: 8   SDSSGRAASRRASRSGGRARRGRHEPGLGGAAERGAGEARLEEA-VNRWVLKFYFHEA 64

>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC|
           3.4.23.-)]
          Length = 811

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 246 TRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNG 127
           T RPSQ P  +   R   + G   RGS   +Q Q   + G
Sbjct: 496 TSRPSQGPANSGRGRQRPASGQSNRGSSTQNQNQDNLNQG 535

>C71BQ_ARATH (Q9LTL0) Cytochrome P450 71B26 (EC 1.14.-.-)|
          Length = 500

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 261 GPLVALTL--VGSLACPSSPVGFTAFRDAILICCSVPALEG 377
           GP++ L L  V +L   SS     A RD  L CCS P+L G
Sbjct: 63  GPVMLLKLGKVPTLILSSSETAKQALRDYDLHCCSRPSLAG 103

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -3

Query: 371  QCRNRAAYKNGIPEGREANRT*RAGQGAYQG*CH*GACKAQ*H----GDQASSRQGRHQE 204
            Q R+ A  ++G    + A+ +  +G G  Q      A +   H    G QAS  +G  ++
Sbjct: 2969 QARSSAGERHGSHHQQSADSSRHSGIGHGQAS---SAVRDSGHRGYSGSQASDNEGHSED 3025

Query: 203  G*VKATGA*EEGQEHQASSSKKLTTAAGERSLHS 102
               ++  A  +   HQ S  +     +GE S HS
Sbjct: 3026 SDTQSVSAHGQAGSHQQSHQESARGRSGETSGHS 3059



 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -3

Query: 371  QCRNRAAYKNGIPEGREANRT*RAGQGAYQG*CH*GACKAQ*H----GDQASSRQGRHQE 204
            Q R+ A  ++G    + A+ +  +G G  Q      A +   H    G QAS  +G  ++
Sbjct: 2645 QARSSAGERHGSHHQQSADSSRHSGIGHGQAS---SAVRDSGHRGYSGSQASDNEGHSED 2701

Query: 203  G*VKATGA*EEGQEHQASSSKKLTTAAGERSLHS 102
               ++  A  +   HQ S  +     +GE S HS
Sbjct: 2702 SDTQSVSAHGQAGSHQQSHQESARGRSGETSGHS 2735



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 242  GDQASSRQGRHQEG*VKATGA*EEGQEHQASSSKKLTTAAGERS 111
            G QAS  +G  +E   ++  A  +   HQ S  +     +GERS
Sbjct: 1716 GSQASDSEGHSEESDTQSVSAHGQAGPHQQSHQESTRGQSGERS 1759

>SFRS6_RABIT (O18776) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55) (Fragment)
          Length = 81

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 252 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSR 121
           S+++  S+   R+  R  S+S G   R SR+ S+ + K+D GSR
Sbjct: 16  SISKSRSRSRSRSKGRSRSRSKG---RKSRSKSKSKPKSDRGSR 56

>YBAV_SHIFL (P0AAR9) Hypothetical protein ybaV precursor|
          Length = 123

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 HIRMASLKAVKPTGLEGQAKEPTKVSATKGPAKLSN 245
           H  +A+    KPT +E +A+ P   S    PAK S+
Sbjct: 21  HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD 56

>YBAV_ECOLI (P0AAR8) Hypothetical protein ybaV precursor|
          Length = 123

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 352 HIRMASLKAVKPTGLEGQAKEPTKVSATKGPAKLSN 245
           H  +A+    KPT +E +A+ P   S    PAK S+
Sbjct: 21  HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD 56

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 252 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSR 121
           S TRR S+ P R  SR   +   S RR SR+P ++ +   + SR
Sbjct: 437 SPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSKSR 480

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 255 SSVTRRPSQQ---PPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSRRTEL 109
           SS TR  SQQ     +++S   S   G    GSR+P  +Q  + NG +  EL
Sbjct: 80  SSGTRSGSQQISQDDQSSSPGSSDILGKESEGSRSPDPEQMTSINGEKAQEL 131

>H1_SALTR (P02254) Histone H1|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -1

Query: 331 KAVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPRE----PKKRVK 164
           KA  P   +  AK+P   +A K P K++                   P++    PKK  K
Sbjct: 111 KAAAPKAKKVAAKKP---AAAKKPKKVAAKKAVAAKKSPKKAKKPATPKKAAKSPKKATK 167

Query: 163 STKPAAAK 140
           + KP AAK
Sbjct: 168 AAKPKAAK 175

>SOX9_CHICK (P48434) Transcription factor SOX-9|
          Length = 494

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 237 PSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQK 139
           P+QQ P   + +LS SH S ++  + P QQQQ+
Sbjct: 368 PAQQRPHIKTEQLSPSHNSEQQ--QHPEQQQQQ 398

>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 255  SSVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSR 121
            S ++R PS  PPR +    +Q   + ++  R+ S+ + K+   SR
Sbjct: 869  SRLSREPSSNPPRKSQHSSTQRKKTPKKRRRSKSRSRSKSIRRSR 913

>COBC_SALTI (P58652) Alpha-ribazole phosphatase (EC 3.1.3.73)|
           (Alpha-ribazole-5'-phosphate phosphatase)
          Length = 202

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 281 LGRLLGLPFKSGWLHGL-QGCHSYMLLCSGTGRLRSLSCR 397
           + RLL +P  S W   + QGC S + +C G   L+ L+ R
Sbjct: 157 IARLLAMPAASLWHFRVEQGCWSTIDICEGFATLKVLNSR 196

>H12_MOUSE (P15864) Histone H1.2 (H1 VAR.1) (H1c)|
          Length = 211

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/79 (26%), Positives = 28/79 (35%)
 Frame = -1

Query: 373 SSAGTEQHIRMASLKAVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXX 194
           S     Q  +  + KA KP G    AK+P K +    P K +                  
Sbjct: 112 SGEAKPQAKKAGAAKAKKPAGA---AKKPKKATGAATPKKAAKKTPKKAKKPAAAAVTKK 168

Query: 193 KPREPKKRVKSTKPAAAKN 137
             + PKK  K TKP   K+
Sbjct: 169 VAKSPKK-AKVTKPKKVKS 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,415,771
Number of Sequences: 219361
Number of extensions: 900495
Number of successful extensions: 2658
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)