ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37a03 |
|---|---|
| Clone Library Name | barley_pub |
>MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 33.1 bits (74), Expect = 0.89 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Frame = -1 Query: 611 VKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGIKEGINAKFFQ 432 ++TD ++ +V+ +QQ+ A E K + LD + +A + R+ + E N K Sbjct: 1229 LETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKAN-KLQN 1287 Query: 431 EADEKLKLLDLAQTEKKPVK------GLELFLESTKEVKALDSKPK 312 E D LL+ + EKK +K GLE L+ T+E+ +++ K Sbjct: 1288 ELDNVSTLLE--EAEKKGIKFAKDAAGLESQLQDTQELLQEETRQK 1331
>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 33.1 bits (74), Expect = 0.89 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Frame = -1 Query: 611 VKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGIKEGINAKFFQ 432 ++TD ++ +V+ +QQ+ A E K + LD + +A + R+ + E N K Sbjct: 1229 LETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKAN-KLQN 1287 Query: 431 EADEKLKLLDLAQTEKKPVK------GLELFLESTKEVKALDSKPK 312 E D LL+ + EKK +K GLE L+ T+E+ +++ K Sbjct: 1288 ELDNVSTLLE--EAEKKGIKFAKDAAGLESQLQDTQELLQEETRQK 1331
>GLDA_CITFR (P45511) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH)| Length = 365 Score = 32.7 bits (73), Expect = 1.2 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = +3 Query: 300 LHDGLRLGVECLYLLGALQKQFETLHRLLFSLSQVQELEFFIRFLEKLGI 449 +H+G + EC +L + F TL +L+ S ++E+E + F +K+G+ Sbjct: 256 IHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPMEEIETVLNFCQKVGL 305
>MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 32.3 bits (72), Expect = 1.5 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Frame = -1 Query: 611 VKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMAGGIKEGINAKFFQ 432 ++TD ++ +V+ +QQ+ A E K + LD + +A + R+ + E N K Sbjct: 1229 LETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKAN-KLQN 1287 Query: 431 EADEKLKLLDLAQTEKKPVK------GLELFLESTKEVKALDSKPK 312 E D LL+ + EKK +K GLE L+ T+E+ +++ K Sbjct: 1288 ELDNVSTLLE--EAEKKGMKFAKDAAGLESQLQDTQELLQEETRQK 1331
>ENGA_LEPIN (Q8F6K1) GTP-binding protein engA| Length = 489 Score = 31.6 bits (70), Expect = 2.6 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Frame = -1 Query: 476 MAGGIKEGINAKFFQEADEKLKLLDLAQTEK--KPVKGLELFLESTKEVKALDSKPKTIV 303 +AG ++ I+ + D +L L D A K K + LE F + +KA++S I Sbjct: 257 VAGTTRDSIDT-LLEFGDRRLLLTDTAGIRKQSKTAEALE-FYSYQRTIKAIESSDLVIH 314 Query: 302 QNDAKKPTKTFDVPIKSAAVHRSNRFLI 219 DAKK FD I S + FL+ Sbjct: 315 LLDAKKGFGDFDKKITSLLQEKGKPFLL 342
>ENGA_LEPIC (Q72PQ1) GTP-binding protein engA| Length = 489 Score = 31.6 bits (70), Expect = 2.6 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Frame = -1 Query: 476 MAGGIKEGINAKFFQEADEKLKLLDLAQTEK--KPVKGLELFLESTKEVKALDSKPKTIV 303 +AG ++ I+ + D +L L D A K K + LE F + +KA++S I Sbjct: 257 VAGTTRDSIDT-LLEFGDRRLLLTDTAGIRKQSKTAEALE-FYSYQRTIKAIESSDLVIH 314 Query: 302 QNDAKKPTKTFDVPIKSAAVHRSNRFLI 219 DAKK FD I S + FL+ Sbjct: 315 LLDAKKGFGDFDKKITSLLQEKGKPFLL 342
>SPTB1_MOUSE (P15508) Spectrin beta chain, erythrocyte (Beta-I spectrin)| Length = 2127 Score = 30.8 bits (68), Expect = 4.4 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 6/128 (4%) Frame = -1 Query: 659 TSKWKSPNKSRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLC 480 TSKW + +VV+ DL Q V AIQ+ ++GLE + + ++ A YL Sbjct: 957 TSKWIM---DKTKVVESTKDLGQDLAGVIAIQRKLSGLERDVLAIRDRVSALERESQYLM 1013 Query: 479 RMAGGIKEGINAKFFQEADEKL--KLLDLAQTEKKPV---KGLELFLESTKEVKA-LDSK 318 KE I + Q EKL L D Q ++ + L+ FL+ + KA L Sbjct: 1014 ESHPEQKEDIGQR--QADVEKLWKGLQDALQGQELSLGEASKLQAFLQDLDDFKAWLSMA 1071 Query: 317 PKTIVQND 294 K + D Sbjct: 1072 QKAVASED 1079
>PSD_RHOBA (Q7UTK9) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 240 Score = 30.8 bits (68), Expect = 4.4 Identities = 26/103 (25%), Positives = 44/103 (42%) Frame = -1 Query: 665 KWTSKWKSPNKSRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWY 486 K+ + +S + NE +DV+ + +IG + I+Q+ +I D G Sbjct: 139 KFLNALRSESTKENENIDVELECPEIGGRIVRIRQITGQFARRIVCWARVGDVLQRG--- 195 Query: 485 LCRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLELF 357 M G IK G + DE L++ +AQ +K G +F Sbjct: 196 --EMFGMIKLGSRTELVIPRDEALEI--VAQVGEKVCAGSTVF 234
>UIDB_ECOLI (P30868) Glucuronide carrier protein (Glucuronide permease)| Length = 457 Score = 30.8 bits (68), Expect = 4.4 Identities = 26/99 (26%), Positives = 43/99 (43%) Frame = +1 Query: 64 EYISTCLSWKIPFGMQVILLLYFPIKQSKQECNVHHEATPAGINHSTRPSLRIKNLFDLC 243 E +S W I + ++L + K +++ NV +N S + R + LF LC Sbjct: 177 EMVSVYHFWTIVLAIAGMVLYFICFKSTRE--NVVRIVAQPSLNISLQTLKRNRPLFMLC 234 Query: 244 TAALFMGTSNVFVGFLASFCTMVLGLESSAFTSLVLSRN 360 AL + S V + F + ++ FT LVL +N Sbjct: 235 IGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQN 273
>EF2_METMA (Q8PUR7) Elongation factor 2 (EF-2)| Length = 730 Score = 30.8 bits (68), Expect = 4.4 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -1 Query: 356 LESTKEVKALDSKPKTIVQNDAKKPTKTFDVPIKSAAVHRSNRFLIRKEGLVL*LMPA 183 +E K V+ SKP + + KK T+ PI+ + +R NRF I E L L ++ A Sbjct: 449 IERDKNVEITTSKPIVVYRETIKKKTE----PIEGKSPNRHNRFYISVEPLDLEIVSA 502
>TPM_SCHJA (Q26519) Tropomyosin| Length = 284 Score = 30.8 bits (68), Expect = 4.4 Identities = 18/95 (18%), Positives = 43/95 (45%) Frame = -1 Query: 653 KWKSPNKSRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRM 474 K + K NE+ ++ T + Q D + +Q+ + K+E + + A A + + R Sbjct: 32 KEEEREKRENEISELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRR 91 Query: 473 AGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKG 369 ++E + + + KL + ++T ++ +G Sbjct: 92 IRLLEEDLEVSSSRLTETLTKLEEASKTAEESERG 126
>THSB_AERPE (Q9YA66) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin| beta subunit) Length = 548 Score = 30.4 bits (67), Expect = 5.8 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -1 Query: 419 KLKLLDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQNDAKKPTKT-FDVPIKSAAV 243 ++ LLD +KP LE+ + S +++KAL K + I+Q +K T +V I + Sbjct: 245 RIALLDTPLEIEKPEIDLEISITSPEQIKALYEKQERILQEKIEKIAATGANVVITQKGI 304 Query: 242 HRSNRFLIRKEGLV 201 + + K+G++ Sbjct: 305 DDVAQHFLAKKGIL 318
>DHE4_AGABI (P54387) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 457 Score = 30.4 bits (67), Expect = 5.8 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%) Frame = -1 Query: 641 PNKSRNEVVDVKTD-LSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYLCRMA-- 471 P ++NEV + + L + G + A + EE I + +N + A+ AG+WY A Sbjct: 310 PGATQNEVSQEEAEALVKAGTRIVAEGSNMGCTEEAIAIFENSRRASRAGVWYAPGKASN 369 Query: 470 ------GGIKEGINAKFF----QEADEKLK 411 G++ N++ QE D KLK Sbjct: 370 CGGVAVSGLEMAQNSQRLAWSTQEVDAKLK 399
>SYG1_YEAST (P40528) Protein SYG1| Length = 902 Score = 30.4 bits (67), Expect = 5.8 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = -1 Query: 407 LDLAQTEKKPVKGLELFLESTKEVKALDSKPKTIVQNDAKKPTKTFDVPIKSAAVHRSNR 228 L AQ +K+P+ LE + AL + PK N K T I VHR+NR Sbjct: 340 LSSAQRDKEPITWLETQITEWFTT-ALTNSPKDRKHNTHKLKKLTIQYSISEQMVHRNNR 398 Query: 227 FLIR 216 +++ Sbjct: 399 SIVQ 402
>B3A4_RAT (Q8K4V2) Anion exchange protein 4 (Anion exchanger 4) (Solute| carrier family 4 member 9) Length = 953 Score = 30.4 bits (67), Expect = 5.8 Identities = 23/76 (30%), Positives = 28/76 (36%) Frame = +2 Query: 407 RA*VFHPLLGKTWHLFPLLYLLPFGRGTIYQH*PHPACCQAARSSLPIRLPSVELLQRQS 586 RA H LL + LP GR P P C + P +L V L RQS Sbjct: 271 RASNLHDLLAALDAFLQEVTALPPGRWDRTARIPPPKCLPSQHKRFPSKLQEVTSLSRQS 330 Query: 587 QFETDQF*HQRPHSGI 634 + H PH+ I Sbjct: 331 AALAENKHHHGPHTPI 346
>TXLNG_HUMAN (Q9NUQ3) Gamma-taxilin (Lipopolysaccharide-specific response| protein 5) Length = 528 Score = 30.0 bits (66), Expect = 7.5 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = -1 Query: 662 WTSKWKSPNKSRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQDAANAGIWYL 483 W +KW++ NK+ ++ + KT + + +A+Q + LE+ L +++ N + L Sbjct: 399 WRTKWENNNKALLQMAEEKTVRDK---EYKALQIKLERLEKLCRALQTERNELNEKVEVL 455 Query: 482 CRMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEVKA-----LDSK 318 KE ++ K +A + DLA +P L+ E K L+++ Sbjct: 456 -------KEQVSIKAAIKAANR----DLATPVMQPCTALDSHKELNTSSKRALGAHLEAE 504 Query: 317 PKTIVQNDAKKPTKTFDVP 261 PK+ ++ +KP T P Sbjct: 505 PKS-QRSAVQKPPSTGSAP 522
>MRE11_THEAC (Q9HLR7) DNA double-strand break repair protein mre11| Length = 376 Score = 30.0 bits (66), Expect = 7.5 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 12/71 (16%) Frame = -1 Query: 440 FFQEADEKLKLLDLAQTEKKPVKGLELFLESTKEV---------KALDSKPKTIVQNDAK 288 + E EKL L + EKKP+ GLE+ + + E A+ S+PK ++ D K Sbjct: 259 YVHEISEKLSSLRVKDNEKKPLVGLEIHGDISMETVMQDISKFDNAIFSRPK--IRKDPK 316 Query: 287 KP---TKTFDV 264 P T+T D+ Sbjct: 317 IPNIHTETADL 327
>RECA_LEPBI (P48290) Protein recA (Recombinase A)| Length = 387 Score = 29.6 bits (65), Expect = 9.8 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%) Frame = -1 Query: 536 IELLDNKQDAANAGIWYLC--RMAGGIKEGINAKFFQEADEKLKLLDLAQTEKKPVKGLE 363 I+L A AG WY G KE + F + D K+ + + + + L Sbjct: 287 IDLAVRHDLVAKAGSWYSYGGEKIGQGKEQVKNFFLENPDIAFKI----ENQVRDLNSLP 342 Query: 362 LFLES---TKEVKALDSKPKTIVQNDAKKP 282 L +S T+EVK+++ PK + +K+P Sbjct: 343 LMDQSKIQTREVKSIERDPKETKETKSKQP 372
>GATA6_CHICK (P43693) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 387 Score = 29.6 bits (65), Expect = 9.8 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = +2 Query: 371 PSPASFQFEPGPRA*VFHPLLGKTWHLFPLLYLLPFGRGTIYQH*PHPACCQAARSSLPI 550 P P + + P P A P LG W PF ++ C Q + +P+ Sbjct: 119 PRPLNGSY-PAPYASYVGPQLGPAWPA------APFENSVLH-------CLQGRAAPIPV 164 Query: 551 RLPSVELLQRQSQ 589 R PS ELL+ S+ Sbjct: 165 RAPSAELLEDLSE 177
>GTR1_DROME (Q8IRI6) Glucose transporter type 1| Length = 656 Score = 29.6 bits (65), Expect = 9.8 Identities = 14/46 (30%), Positives = 27/46 (58%) Frame = -1 Query: 647 KSPNKSRNEVVDVKTDLSQIGFDVEAIQQMVAGLEEKIELLDNKQD 510 KS ++EV +VK D+ I +++ +QQ+ +EE E +D ++ Sbjct: 195 KSVESCQSEVSEVKRDMVAIKHELDTVQQVKEEIEELREYVDRLEE 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,710,068 Number of Sequences: 219361 Number of extensions: 2303245 Number of successful extensions: 7315 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 7009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7309 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7422931207 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
