ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8g07 |
|---|---|
| Clone Library Name | barley_pub |
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -3 Query: 292 RRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQ-KTDNGS 173 RRP PPRA SRR H +R PS+++ + D GS Sbjct: 498 RRPRSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGS 538
>DBH_MYCSM (Q9ZHC5) DNA-binding protein HU homolog (Histone-like protein)| (Hlp) Length = 208 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/67 (26%), Positives = 24/67 (35%) Frame = -2 Query: 389 ASLKAVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKS 210 A A K + K P K +ATK PAK + T + P K+ + Sbjct: 139 AKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPAKKAAA 198 Query: 209 TKPAAAK 189 K A K Sbjct: 199 KKAPAKK 205 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/60 (26%), Positives = 22/60 (36%) Frame = -2 Query: 377 AVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKSTKPA 198 A K + K P K +ATK PAK + T + P K+ + PA Sbjct: 134 AKKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPA 193
>H1_ONCMY (P06350) Histone H1 [Contains: Oncorhyncin II]| Length = 206 Score = 29.3 bits (64), Expect = 4.7 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = -2 Query: 434 ASEPSSAGTEQHIRMASLKAVKPTGLEGQAKEP-TKVSATKGPAKLSNTXXXXXXXXXXX 258 A +P++A + ++A+ KAV +AK+P T A K P K+ Sbjct: 122 AKKPAAAKKPK--KVAAKKAVAAKKSPKKAKKPATPKKAAKSPKKVKKPAAAAKKAA--- 176 Query: 257 XXXXXKPREPKKRVKSTKPAAAK 189 + PKK K+ KP AAK Sbjct: 177 -------KSPKKATKAAKPKAAK 192
>MPIP_YEAST (P23748) M-phase inducer phosphatase (EC 3.1.3.48) (Mitosis| initiation protein MIH1) (Mitotic inducer homolog) Length = 554 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 301 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQ 197 S++R+PS +SRR+ + G + R SR SQ+ Sbjct: 156 SLSRKPSMNSSSNSSRRVQRQDGKIPRSSRKSSQK 190
>COBC_SALTI (P58652) Alpha-ribazole phosphatase (EC 3.1.3.73)| (Alpha-ribazole-5'-phosphate phosphatase) Length = 202 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +3 Query: 330 LGRLLGLPFKSGWLHGL-QGCHSYMLLCSGTGRLRSLSPRA 449 + RLL +P S W + QGC S + +C G L+ L+ RA Sbjct: 157 IARLLAMPAASLWHFRVEQGCWSTIDICEGFATLKVLNSRA 197
>EX7L_ZYMMO (Q9FDL4) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 544 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -3 Query: 301 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSRRTELA 155 + T RP+ R A + S L G R Q+QQK DN +RR + A Sbjct: 362 AATLRPALLQARIAREQARLSACRLPTGQRLVIQEQQKLDNVTRRLKQA 410
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -3 Query: 295 TRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNG 176 T RPSQ P + R + G RGS +Q Q + G Sbjct: 496 TSRPSQGPANSGRGRQRPASGQSNRGSSTQNQNQDNLNQG 535
>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 495 Score = 28.5 bits (62), Expect = 8.1 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -3 Query: 283 SQQPPRAASRRLSQSHGSLRRGSRAPS-QQQQKTDNGSRRTELA*LSPWCYELYMNPA 113 S RAASRR S+S G RRG P + G R E A ++ W + Y + A Sbjct: 8 SDSSGRAASRRASRSGGRARRGRHEPGLGGAAERGAGEARLEEA-VNRWVLKFYFHEA 64
>HNF1A_RAT (P15257) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific| transcription factor LF-B1) (LFB1) Length = 628 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -2 Query: 434 ASEPSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 309 A PSS+G A+L V PTGLE + E VSAT GP Sbjct: 331 AEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375
>HNF1A_MOUSE (P22361) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific| transcription factor LF-B1) (LFB1) Length = 628 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -2 Query: 434 ASEPSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 309 A PSS+G A+L V PTGLE + E VSAT GP Sbjct: 331 AEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375
>C71BQ_ARATH (Q9LTL0) Cytochrome P450 71B26 (EC 1.14.-.-)| Length = 500 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 310 GPLVALTL--VGSLACPSSPVGFTAFRDAILICCSVPALEG 426 GP++ L L V +L SS A RD L CCS P+L G Sbjct: 63 GPVMLLKLGKVPTLILSSSETAKQALRDYDLHCCSRPSLAG 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,381,487 Number of Sequences: 219361 Number of extensions: 1112949 Number of successful extensions: 3086 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3006 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3081 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
