ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
2dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
3dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 161 4e-36
4gb|BT016551.1| Zea mays clone Contig384 mRNA sequence 107 5e-20
5gb|AY110061.1| Zea mays CL537_1 mRNA sequence 92 3e-15
6emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 56 2e-04
7gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, com... 44 0.59
8gb|AC002342.1|ATAC002342 Arabidopsis thaliana chromosome V BAC T... 44 0.59
9gb|AC121980.2| Mus musculus BAC clone RP24-290F15 from 1, comple... 44 0.59
10gb|AC160472.4| Mus musculus BAC clone RP24-97J22 from chromosome... 44 0.59
11emb|BX571959.8| Zebrafish DNA sequence from clone DKEY-46I6 in l... 44 0.59
12dbj|AB016874.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.59
13ref|XM_479783.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
14emb|BX296565.8| Zebrafish DNA sequence from clone CH211-269E2 in... 42 2.3
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
16gb|AC158806.4| Mus musculus 10 BAC RP24-89F13 (Roswell Park Canc... 42 2.3
17gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complet... 42 2.3
18dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
19dbj|AK103042.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
20gb|AC153513.6| Mus musculus 10 BAC RP23-322K8 (Roswell Park Canc... 42 2.3
21emb|AL928680.5| Mouse DNA sequence from clone RP23-396N6 on chro... 42 2.3
22gb|AC063920.19| Homo sapiens 3 BAC RP11-60M4 (Roswell Park Cance... 40 9.2
23gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, co... 40 9.2
24emb|AL445288.9| Human DNA sequence from clone RP11-95F22 on chro... 40 9.2
25emb|AL096705.13|HSJ1085J7 Human DNA sequence from clone RP5-1085... 40 9.2
26gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosom... 40 9.2
27emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in ... 40 9.2
28dbj|AK135602.1| Mus musculus adult male adrenal gland cDNA, RIKE... 40 9.2
29gb|AC155709.5| Mus musculus 10 BAC RP24-200F4 (Roswell Park Canc... 40 9.2
30dbj|AK172380.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 9.2
31emb|BX005294.6| Zebrafish DNA sequence from clone CH211-189K21 i... 40 9.2
32gb|AC158636.5| Mus musculus 10 BAC RP23-402A24 (Roswell Park Can... 40 9.2
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
34gb|AC007494.8| Homo sapiens chromosome 16 clone RP11-329J18, com... 40 9.2
35dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 40 9.2
36gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_... 40 9.2
37gb|AC165322.12| Mus musculus chromosome 1, clone RP23-127J15, co... 40 9.2
38dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.2
39dbj|AP000798.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.2
40gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, comple... 40 9.2
41emb|AL049631.7|HSDJ513M9 Human DNA sequence from clone RP3-513M9... 40 9.2
42gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome ... 40 9.2
43emb|AL844575.4| Mouse DNA sequence from clone RP23-156F1 on chro... 40 9.2
44emb|AL928564.8| Mouse DNA sequence from clone RP23-255J22 on chr... 40 9.2
45emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chr... 40 9.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  161 bits (81), Expect = 4e-36
 Identities = 219/265 (82%)
 Strand = Plus / Plus

                                                                            
Query: 389      cctcgaagataaaggtgtgtgccgcagatacttcgagctccttgagggccttcaggtatg 448
                |||| ||||| ||||||||  ||||||| || |  ||||||||||| ||||||||||| |
Sbjct: 14333376 cctcaaagatgaaggtgtggtccgcagacacctgaagctccttgagagccttcaggtagg 14333435

                                                                            
Query: 449      ggaagggtgcgggctttggcttctcgcattcacctccaactatcacggcctggaagaagt 508
                |||| || ||||| || |||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 14333436 ggaatggggcgggtttcggcttctcacattcgcctccaacgatgacggcctggaagaaat 14333495

                                                                            
Query: 509      ctgatagaccaagaagtttgatcatcagctctgcattgatccttggggcattggttactg 568
                |||  || ||||||||   |||||| ||||| | ||| ||||| |||||||||||||| |
Sbjct: 14333496 ctgtgaggccaagaagggagatcatgagctcggaattaatcctgggggcattggttacag 14333555

                                                                            
Query: 569      cagcacgtttgtagccgtgatctttcacccactgaaccagcttgccaagtccctttacag 628
                | ||||| ||||| || |||||||| |||||||||||||  ||  |||| ||||||||||
Sbjct: 14333556 ccgcacgcttgtatccatgatctttgacccactgaaccactttagcaaggccctttacag 14333615

                                         
Query: 629      gctctaggcgctccattgccaaact 653
                | || |  |||||| ||||||||||
Sbjct: 14333616 gttccaaacgctcctttgccaaact 14333640



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 145/183 (79%)
 Strand = Plus / Plus

                                                                            
Query: 209      tctttagcttcgcttcctccctgtcaatctcctcgagcgcgttccacagtttctggtctt 268
                |||||||||| |||||||| ||||| ||||| || || ||| |||| || ||  ||||||
Sbjct: 14333110 tctttagcttggcttcctctctgtctatctcttcaagtgcgctccaaagcttggggtctt 14333169

                                                                            
Query: 269      catagtcattgacgatcaatgcggccccggcttcctctagggacttctccgggttcctcg 328
                |||| || |||| |||||| | ||| || || |||  |||||||||||| |||||||| |
Sbjct: 14333170 cataatccttgatgatcaacgtggctcctgcatccagtagggacttctctgggttccttg 14333229

                                                                            
Query: 329      tcaacacggcgacgacgggcatccccgcagcaacacccgcacgcgtccctgaagcagagt 388
                |   ||| || || || || || || |||||||| || ||||| || ||||||||||| |
Sbjct: 14333230 ttgccacagcaacaacaggaattccagcagcaacgcctgcacgtgtgcctgaagcagaat 14333289

                   
Query: 389      cct 391
                |||
Sbjct: 14333290 cct 14333292
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>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score =  161 bits (81), Expect = 4e-36
 Identities = 219/265 (82%)
 Strand = Plus / Plus

                                                                          
Query: 389    cctcgaagataaaggtgtgtgccgcagatacttcgagctccttgagggccttcaggtatg 448
              |||| ||||| ||||||||  ||||||| || |  ||||||||||| ||||||||||| |
Sbjct: 149921 cctcaaagatgaaggtgtggtccgcagacacctgaagctccttgagagccttcaggtagg 149980

                                                                          
Query: 449    ggaagggtgcgggctttggcttctcgcattcacctccaactatcacggcctggaagaagt 508
              |||| || ||||| || |||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 149981 ggaatggggcgggtttcggcttctcacattcgcctccaacgatgacggcctggaagaaat 150040

                                                                          
Query: 509    ctgatagaccaagaagtttgatcatcagctctgcattgatccttggggcattggttactg 568
              |||  || ||||||||   |||||| ||||| | ||| ||||| |||||||||||||| |
Sbjct: 150041 ctgtgaggccaagaagggagatcatgagctcggaattaatcctgggggcattggttacag 150100

                                                                          
Query: 569    cagcacgtttgtagccgtgatctttcacccactgaaccagcttgccaagtccctttacag 628
              | ||||| ||||| || |||||||| |||||||||||||  ||  |||| ||||||||||
Sbjct: 150101 ccgcacgcttgtatccatgatctttgacccactgaaccactttagcaaggccctttacag 150160

                                       
Query: 629    gctctaggcgctccattgccaaact 653
              | || |  |||||| ||||||||||
Sbjct: 150161 gttccaaacgctcctttgccaaact 150185



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 145/183 (79%)
 Strand = Plus / Plus

                                                                          
Query: 209    tctttagcttcgcttcctccctgtcaatctcctcgagcgcgttccacagtttctggtctt 268
              |||||||||| |||||||| ||||| ||||| || || ||| |||| || ||  ||||||
Sbjct: 149655 tctttagcttggcttcctctctgtctatctcttcaagtgcgctccaaagcttggggtctt 149714

                                                                          
Query: 269    catagtcattgacgatcaatgcggccccggcttcctctagggacttctccgggttcctcg 328
              |||| || |||| |||||| | ||| || || |||  |||||||||||| |||||||| |
Sbjct: 149715 cataatccttgatgatcaacgtggctcctgcatccagtagggacttctctgggttccttg 149774

                                                                          
Query: 329    tcaacacggcgacgacgggcatccccgcagcaacacccgcacgcgtccctgaagcagagt 388
              |   ||| || || || || || || |||||||| || ||||| || ||||||||||| |
Sbjct: 149775 ttgccacagcaacaacaggaattccagcagcaacgcctgcacgtgtgcctgaagcagaat 149834

                 
Query: 389    cct 391
              |||
Sbjct: 149835 cct 149837
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score =  161 bits (81), Expect = 4e-36
 Identities = 219/265 (82%)
 Strand = Plus / Plus

                                                                         
Query: 389   cctcgaagataaaggtgtgtgccgcagatacttcgagctccttgagggccttcaggtatg 448
             |||| ||||| ||||||||  ||||||| || |  ||||||||||| ||||||||||| |
Sbjct: 25179 cctcaaagatgaaggtgtggtccgcagacacctgaagctccttgagagccttcaggtagg 25238

                                                                         
Query: 449   ggaagggtgcgggctttggcttctcgcattcacctccaactatcacggcctggaagaagt 508
             |||| || ||||| || |||||||| ||||| |||||||| || |||||||||||||| |
Sbjct: 25239 ggaatggggcgggtttcggcttctcacattcgcctccaacgatgacggcctggaagaaat 25298

                                                                         
Query: 509   ctgatagaccaagaagtttgatcatcagctctgcattgatccttggggcattggttactg 568
             |||  || ||||||||   |||||| ||||| | ||| ||||| |||||||||||||| |
Sbjct: 25299 ctgtgaggccaagaagggagatcatgagctcggaattaatcctgggggcattggttacag 25358

                                                                         
Query: 569   cagcacgtttgtagccgtgatctttcacccactgaaccagcttgccaagtccctttacag 628
             | ||||| ||||| || |||||||| |||||||||||||  ||  |||| ||||||||||
Sbjct: 25359 ccgcacgcttgtatccatgatctttgacccactgaaccactttagcaaggccctttacag 25418

                                      
Query: 629   gctctaggcgctccattgccaaact 653
             | || |  |||||| ||||||||||
Sbjct: 25419 gttccaaacgctcctttgccaaact 25443



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 145/183 (79%)
 Strand = Plus / Plus

                                                                         
Query: 209   tctttagcttcgcttcctccctgtcaatctcctcgagcgcgttccacagtttctggtctt 268
             |||||||||| |||||||| ||||| ||||| || || ||| |||| || ||  ||||||
Sbjct: 24913 tctttagcttggcttcctctctgtctatctcttcaagtgcgctccaaagcttggggtctt 24972

                                                                         
Query: 269   catagtcattgacgatcaatgcggccccggcttcctctagggacttctccgggttcctcg 328
             |||| || |||| |||||| | ||| || || |||  |||||||||||| |||||||| |
Sbjct: 24973 cataatccttgatgatcaacgtggctcctgcatccagtagggacttctctgggttccttg 25032

                                                                         
Query: 329   tcaacacggcgacgacgggcatccccgcagcaacacccgcacgcgtccctgaagcagagt 388
             |   ||| || || || || || || |||||||| || ||||| || ||||||||||| |
Sbjct: 25033 ttgccacagcaacaacaggaattccagcagcaacgcctgcacgtgtgcctgaagcagaat 25092

                
Query: 389   cct 391
             |||
Sbjct: 25093 cct 25095
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>gb|BT016551.1| Zea mays clone Contig384 mRNA sequence
          Length = 1157

 Score =  107 bits (54), Expect = 5e-20
 Identities = 154/186 (82%), Gaps = 1/186 (0%)
 Strand = Plus / Minus

                                                                       
Query: 423 gagctccttgagggccttcaggtatgggaagggtgcgggctttggcttctcgcattcacc 482
           |||||||||||||||| | ||||| ||| | || ||||||||||||| |||||| || ||
Sbjct: 623 gagctccttgagggccctgaggtaagggtacggcgcgggctttggctgctcgcactcgcc 564

                                                                       
Query: 483 tccaactatcacggcctggaagaagtctgatagaccaagaagtttgatcatcagctctgc 542
           ||| || || ||||||||||||||||| || || || || ||   |||||||||||| ||
Sbjct: 563 tccgacgatgacggcctggaagaagtccgagaggcccaggagcgagatcatcagctccgc 504

                                                                       
Query: 543 attgatccttggggcattggttactgcagca-cgtttgtagccgtgatctttcacccact 601
            |||||||| ||||| ||||| || || ||| || ||||| ||||| |||||||||||||
Sbjct: 503 gttgatcctgggggcgttggtcaccgccgcagcgcttgtacccgtggtctttcacccact 444

                 
Query: 602 gaacca 607
           | ||||
Sbjct: 443 ggacca 438



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 309 ggacttctccgggttcctcgtcaacacggcgacgacgggcatccc 353
           ||||||||||||||||||||||  |||  ||||||| ||||||||
Sbjct: 737 ggacttctccgggttcctcgtcgccacaccgacgacaggcatccc 693
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>gb|AY110061.1| Zea mays CL537_1 mRNA sequence
          Length = 1098

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 149/185 (80%)
 Strand = Plus / Minus

                                                                       
Query: 423 gagctccttgagggccttcaggtatgggaagggtgcgggctttggcttctcgcattcacc 482
           |||||||||||||||| | ||||| ||| | || ||||||||||||| |||||| || ||
Sbjct: 511 gagctccttgagggccctgaggtaagggtacggcgcgggctttggctgctcgcactcgcc 452

                                                                       
Query: 483 tccaactatcacggcctggaagaagtctgatagaccaagaagtttgatcatcagctctgc 542
           ||| || || ||||||||||||||||| || || || || ||   |||||||||||| ||
Sbjct: 451 tccgacgatgacggcctggaagaagtccgagaggcccaggagcgagatcatcagctccgc 392

                                                                       
Query: 543 attgatccttggggcattggttactgcagcacgtttgtagccgtgatctttcacccactg 602
            ||||||||     | ||||| || || || || ||||| ||||| ||||||||||||||
Sbjct: 391 gttgatcctnnnnncgttggtcaccgccgcgcgcttgtacccgtggtctttcacccactg 332

                
Query: 603 aacca 607
            ||||
Sbjct: 331 gacca 327



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 265 tcttcatagtcattgacgatcaatgcggccccggcttcctctagggacttctccgggttc 324
           ||||| ||||| ||||||| ||||||||| || |||||| | | ||||||||||||||||
Sbjct: 669 tcttcgtagtccttgacgagcaatgcggctcctgcttccaccaaggacttctccgggttc 610

                 
Query: 325 ctcgtc 330
           ||||||
Sbjct: 609 ctcgtc 604
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 1     ctccccaactacaagtatttaggtacagaaggaata 36
             ||||||||||||||||||||| ||||||| ||||||
Sbjct: 14694 ctccccaactacaagtatttaagtacagagggaata 14659
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>gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, complete sequence
          Length = 133179

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 590   ctttcacccactgaaccagcttgcca 615
             |||||||||||||||||| |||||||
Sbjct: 60031 ctttcacccactgaaccaccttgcca 60006
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>gb|AC002342.1|ATAC002342 Arabidopsis thaliana chromosome V BAC T19K24 genomic sequence, complete
             sequence
          Length = 82359

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 44    agaaacaaacacatataccaaa 65
             ||||||||||||||||||||||
Sbjct: 68431 agaaacaaacacatataccaaa 68452
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>gb|AC121980.2| Mus musculus BAC clone RP24-290F15 from 1, complete sequence
          Length = 129142

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 27     agaaggaatagacaacaagaaa 48
              ||||||||||||||||||||||
Sbjct: 123084 agaaggaatagacaacaagaaa 123063
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>gb|AC160472.4| Mus musculus BAC clone RP24-97J22 from chromosome 1, complete sequence
          Length = 170576

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    agaaggaatagacaacaagaaa 48
             ||||||||||||||||||||||
Sbjct: 77491 agaaggaatagacaacaagaaa 77470
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>emb|BX571959.8| Zebrafish DNA sequence from clone DKEY-46I6 in linkage group 12,
            complete sequence
          Length = 116374

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 9    ctacaagtatttaggtacagaa 30
            ||||||||||||||||||||||
Sbjct: 8036 ctacaagtatttaggtacagaa 8015
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>dbj|AB016874.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K23L20
          Length = 81729

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 44    agaaacaaacacatataccaaa 65
             ||||||||||||||||||||||
Sbjct: 33915 agaaacaaacacatataccaaa 33894
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>ref|XM_479783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1586

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 338 cgacgacgggcatccccgcagcaac 362
           ||||||||| |||||||||||||||
Sbjct: 337 cgacgacggccatccccgcagcaac 313
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>emb|BX296565.8| Zebrafish DNA sequence from clone CH211-269E2 in linkage group 9,
            complete sequence
          Length = 61072

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   tacaagtatttaggtacagaa 30
            |||||||||||||||||||||
Sbjct: 6478 tacaagtatttaggtacagaa 6498
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 338    cgacgacgggcatccccgcagcaac 362
              ||||||||| |||||||||||||||
Sbjct: 892388 cgacgacggccatccccgcagcaac 892412
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>gb|AC158806.4| Mus musculus 10 BAC RP24-89F13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 227508

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 589   tctttcacccactgaaccagcttgc 613
             ||||||||||||||||||| |||||
Sbjct: 61131 tctttcacccactgaaccatcttgc 61155
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>gb|AC104841.6| Homo sapiens BAC clone RP11-475G3 from 2, complete sequence
          Length = 133221

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     aactaaaaagctcaaaatacctaga 88
              |||||||||||||||||||| ||||
Sbjct: 130275 aactaaaaagctcaaaatacataga 130299
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>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470F10
          Length = 185294

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 338   cgacgacgggcatccccgcagcaac 362
             ||||||||| |||||||||||||||
Sbjct: 55126 cgacgacggccatccccgcagcaac 55150
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>dbj|AK103042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F04, full
           insert sequence
          Length = 1586

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 338 cgacgacgggcatccccgcagcaac 362
           ||||||||| |||||||||||||||
Sbjct: 337 cgacgacggccatccccgcagcaac 313
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>gb|AC153513.6| Mus musculus 10 BAC RP23-322K8 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 223529

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 589  tctttcacccactgaaccagcttgc 613
            ||||||||||||||||||| |||||
Sbjct: 2766 tctttcacccactgaaccatcttgc 2742
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>emb|AL928680.5| Mouse DNA sequence from clone RP23-396N6 on chromosome 2, complete
              sequence
          Length = 217726

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 592    ttcacccactgaaccagcttgccaa 616
              |||||||||||| ||||||||||||
Sbjct: 186397 ttcacccactgagccagcttgccaa 186421
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>gb|AC063920.19| Homo sapiens 3 BAC RP11-60M4 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 34432

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   ccaaactaaaaagctcaaaa 80
            ||||||||||||||||||||
Sbjct: 9478 ccaaactaaaaagctcaaaa 9459
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>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence
          Length = 199993

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 647    ccaaacttctgtatttgatctctt 670
              |||| |||||||||||||||||||
Sbjct: 129258 ccaaccttctgtatttgatctctt 129281
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>emb|AL445288.9| Human DNA sequence from clone RP11-95F22 on chromosome 13 Contains the
             5' end of the PCDH17 gene for protocadherin 17 (PCH68
             PCDH68) and two CpG islands, complete sequence
          Length = 94473

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   cttataaataataagaatgg 149
             ||||||||||||||||||||
Sbjct: 65652 cttataaataataagaatgg 65671
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>emb|AL096705.13|HSJ1085J7 Human DNA sequence from clone RP5-1085J7 on chromosome 10, complete
            sequence
          Length = 34836

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   aaaagctcaaaatacctaga 88
            ||||||||||||||||||||
Sbjct: 5015 aaaagctcaaaatacctaga 4996
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>gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosome 10, complete
             sequence
          Length = 196603

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    gaaacaaacacatataccaa 64
             ||||||||||||||||||||
Sbjct: 39353 gaaacaaacacatataccaa 39334
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>emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in linkage group 25,
              complete sequence
          Length = 170161

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     caaactaaaaagctcaaaatacct 85
              |||||||||||| |||||||||||
Sbjct: 117809 caaactaaaaagatcaaaatacct 117786
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>dbj|AK135602.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length
           enriched library, clone:7330401N19 product:hypothetical
           protein, full insert sequence
          Length = 1517

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 590 ctttcacccactgaaccagcttgc 613
           |||||||||||||||||| |||||
Sbjct: 207 ctttcacccactgaaccatcttgc 184
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>gb|AC155709.5| Mus musculus 10 BAC RP24-200F4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176109

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 592   ttcacccactgaaccagcttgcca 615
             |||||||||||||||| |||||||
Sbjct: 85450 ttcacccactgaaccatcttgcca 85473
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>dbj|AK172380.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830205E24 product:pleckstrin homology,
            Sec7 and coiled-coil domains, binding protein, full
            insert sequence
          Length = 2157

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 38   acaacaagaaacaaacacatatac 61
            ||||||||||||||| ||||||||
Sbjct: 2035 acaacaagaaacaaaaacatatac 2058
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>emb|BX005294.6| Zebrafish DNA sequence from clone CH211-189K21 in linkage group 14,
             complete sequence
          Length = 151151

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aatgggtaagtttgcagtgg 164
             ||||||||||||||||||||
Sbjct: 71147 aatgggtaagtttgcagtgg 71128
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>gb|AC158636.5| Mus musculus 10 BAC RP23-402A24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 191887

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 592    ttcacccactgaaccagcttgcca 615
              |||||||||||||||| |||||||
Sbjct: 154105 ttcacccactgaaccatcttgcca 154128
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      aacacatataccaaactaaa 70
               ||||||||||||||||||||
Sbjct: 3614131 aacacatataccaaactaaa 3614150
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>gb|AC007494.8| Homo sapiens chromosome 16 clone RP11-329J18, complete sequence
          Length = 206262

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  atttaggtacagaaggaata 36
           ||||||||||||||||||||
Sbjct: 417 atttaggtacagaaggaata 436
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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 426    ctccttgagggccttcaggt 445
              ||||||||||||||||||||
Sbjct: 198023 ctccttgagggccttcaggt 198004
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>gb|AC007533.2|AC007533 Homo sapiens chromosome 16 clone RPCI-11_474B12, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     atttaggtacagaaggaata 36
              ||||||||||||||||||||
Sbjct: 146968 atttaggtacagaaggaata 146987
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>gb|AC165322.12| Mus musculus chromosome 1, clone RP23-127J15, complete sequence
          Length = 185278

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   tttcacccactgaaccagct 610
             ||||||||||||||||||||
Sbjct: 52120 tttcacccactgaaccagct 52139
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>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete
             sequences
          Length = 144308

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tataccaaactaaaaagctc 76
             ||||||||||||||||||||
Sbjct: 15204 tataccaaactaaaaagctc 15185
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>dbj|AP000798.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-43E2, complete
             sequences
          Length = 113054

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tataccaaactaaaaagctc 76
             ||||||||||||||||||||
Sbjct: 61688 tataccaaactaaaaagctc 61669
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>gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, complete sequence
          Length = 177948

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    agctccttgagggccttcag 443
              ||||||||||||||||||||
Sbjct: 171484 agctccttgagggccttcag 171503
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>emb|AL049631.7|HSDJ513M9 Human DNA sequence from clone RP3-513M9 on chromosome Xq22.1-22.3,
             complete sequence
          Length = 118047

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tataccaaactaaaaagctc 76
             ||||||||||||||||||||
Sbjct: 25440 tataccaaactaaaaagctc 25459
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>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence
          Length = 264591

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aaacaaacacatataccaaa 65
              ||||||||||||||||||||
Sbjct: 215523 aaacaaacacatataccaaa 215542
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>emb|AL844575.4| Mouse DNA sequence from clone RP23-156F1 on chromosome 2, complete
              sequence
          Length = 190718

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 590    ctttcacccactgaaccagcttgc 613
              |||||||||||||||||| |||||
Sbjct: 130556 ctttcacccactgaaccatcttgc 130579
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>emb|AL928564.8| Mouse DNA sequence from clone RP23-255J22 on chromosome 2, complete
              sequence
          Length = 223337

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     acaacaagaaacaaacacatatac 61
              ||||||||||||||| ||||||||
Sbjct: 127046 acaacaagaaacaaaaacatatac 127023
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>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete
              sequence
          Length = 224628

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 591    tttcacccactgaaccagct 610
              ||||||||||||||||||||
Sbjct: 198400 tttcacccactgaaccagct 198419


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,723,823
Number of Sequences: 3902068
Number of extensions: 5723823
Number of successful extensions: 135870
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135625
Number of HSP's gapped (non-prelim): 242
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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