>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor|
          Length = 995

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 617 PSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVSEEGRMA 438
           PSSS V +  V ++    +D +     S+SSA D++    ++ SST+D    VS+    A
Sbjct: 85  PSSSSVVSSSVSQSSSSVSDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSSSSA 144

Query: 437 FD 432
            D
Sbjct: 145 SD 146



 Score = 33.5 bits (75), Expect = 0.54
 Identities = 30/114 (26%), Positives = 51/114 (44%)
 Frame = -2

Query: 635 SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVS 456
           S   ++ S+SDV +  V ++   A+D +     S SSA D++    ++ SST+D    VS
Sbjct: 136 SVSQSSSSASDVSSS-VSQSSSSASDVSSSVSQSASSASDVSSSVSQSASSTSDVSSSVS 194

Query: 455 EEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVDLNKSAAASN 294
           +    A D       +  S S   +    V     Q  ++T  V  + S +AS+
Sbjct: 195 QSSSSASD-------VSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSASS 241

>DNAJ3_ARATH (Q94AW8) Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)|
          Length = 420

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
 Frame = -2

Query: 476 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 324
           DS+K +S+EG   + + F +GKL        P S SP Q + L+ V+P+    + + + +
Sbjct: 312 DSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPDSLSPDQTKALEAVLPKPSTAQLSDMEI 371

Query: 323 D 321
           D
Sbjct: 372 D 372

>DNJH1_ALLPO (Q03363) DnaJ protein homolog 1 (DNAJ-1) (Fragment)|
          Length = 397

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
 Frame = -2

Query: 476 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 324
           D +K +++EG   + + F RGKL        P S +P Q + ++ V+PR    + T + +
Sbjct: 291 DQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDSLTPDQCKVIESVLPRSASSQLTDMEI 350

Query: 323 D 321
           D
Sbjct: 351 D 351

>DNAJ2_ARATH (P42825) Chaperone protein dnaJ 2 (AtDjA2)|
          Length = 419

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = -2

Query: 476 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 324
           DS+K +S+EG   + + F +GKL        P+S SP Q + ++ V+P+  +   + + +
Sbjct: 313 DSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPESLSPDQTKAIEAVLPKPTKAAISDMEI 372

Query: 323 D 321
           D
Sbjct: 373 D 373

>ARHGC_HUMAN (Q9NZN5) Rho guanine nucleotide exchange factor 12|
           (Leukemia-associated RhoGEF)
          Length = 1544

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 421 LNSLSKAIRPSSETSFHESFVLEMFLNLRWFMSPAEELLQHA 546
           LN   KA+R  +ETS  +    ++   L WF  P EE L+HA
Sbjct: 845 LNEQMKAVRKRNETSVIDQIGEDL---LTWFSGPGEEKLKHA 883

>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 20)
           (Ubiquitin-specific-processing protease 20)
           (Deubiquitinating enzyme 20)
          Length = 913

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 467 KEVSEEGRMAFDKLFSRGKLPQSFSPPQAEGLKVVPRGEQDEATTVTVD 321
           KEV  E R+A   L S  K  +  SPP +  LK VP    DE  + + D
Sbjct: 88  KEVFLEQRLAAPLLGSSSKFSEQDSPPPSHPLKAVPIAVADEGESESED 136

>DNJH2_ALLPO (P42824) DnaJ protein homolog 2|
          Length = 418

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = -2

Query: 476 DSWKEVSEEGRMAFDKLFSRGKL--------PQSFSPPQAEGLK-VVPRGEQDEATTVTV 324
           D +K +++EG   + + F RGKL        P S +P Q + L+ V+P       T + +
Sbjct: 312 DQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDSLTPDQCKALESVLPSRNASRLTDMEI 371

Query: 323 D 321
           D
Sbjct: 372 D 372

>ARHGC_MOUSE (Q8R4H2) Rho guanine nucleotide exchange factor 12|
           (Leukemia-associated RhoGEF)
          Length = 1543

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 421 LNSLSKAIRPSSETSFHESFVLEMFLNLRWFMSPAEELLQHA 546
           LN   KA+R  +ETS  +    ++ +   WF  P EE L+HA
Sbjct: 845 LNEQMKAVRKRNETSVIDHIGEDLLI---WFSGPGEEKLKHA 883

>GZF3_YEAST (P42944) Protein GZF3|
          Length = 551

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 611 SSDVEAEH--VPENQDQANDKTQQACCSNSSAGDMNHRRFRN-ISSTNDSWKEVSEEGRM 441
           S D  + H  +P+NQ + N +T  A C+N+ + D N    +N ++ST   W+   E G M
Sbjct: 92  SPDTNSLHHILPKNQVKNNGQTMDANCNNNVSNDANVPVCKNCLTSTTPLWRR-DEHGAM 150

>ATRX_RAT (P70486) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
           helicase ATRX) (X-linked nuclear protein) (pABP-2)
           (Fragment)
          Length = 527

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
 Frame = -2

Query: 635 SCGSNTPSSSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHR---RFRNISSTNDSWK 465
           S GS  PS  + E  H PE++     K +       +   +      RFR    +++S +
Sbjct: 21  SAGSEKPSGKE-ENVHSPEDKRVTKSKEKSKHLRTRTGRKVKSDVTDRFRKKEQSSESSE 79

Query: 464 EVSEEGRMAFDKLFSRGKLPQSFSPPQ----------AEGLKVVPRGEQDEATTVTVDLN 315
              ++GR    +  +RGK        +          ++G + +P GE+    +  V  N
Sbjct: 80  GEKKQGRQ---RTGTRGKKSTDLKEEKVKREREYESSSDGTEKLPEGEEIGLFSKGVKQN 136

Query: 314 KSAAASNLTRGARWKQR 264
           K+       +G +WK +
Sbjct: 137 KNDTTDEAKKGKKWKDK 153

>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C|
          Length = 1341

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 611 SSDVEAEHVPENQDQANDKTQQACCSNSSAGDMNHRRFRNISSTNDSWKEVSEEGRM--A 438
           +S V     P+N    ND+  +A  S  +  D N     N+S++ND  K +S  G M  A
Sbjct: 750 ASSVAKRTEPKN---INDEANKAISSGDTLHDSNSANAANLSNSND--KNISHNGGMPPA 804

Query: 437 FDKLFSRGK 411
             ++F +G+
Sbjct: 805 VARIFGKGQ 813

>SCC3_SCHPO (O13816) Cohesin subunit psc3 (SCC3 homolog)|
          Length = 962

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 403 WGSFPLLNSLSKAIRPSSETSFHESFVLEMFLNLRWFMSPAEELLQHACCVLSLA*SW 576
           W  F  +  L + +R S ++SF    +L +F     F++P  + L +AC + S+  SW
Sbjct: 472 WIKFSQMCKLLEEVRLSYQSSFDYDTLLRIFQKNGNFITPITQALLNACEIDSIYQSW 529

>MUTS_BUCAI (P57504) DNA mismatch repair protein mutS|
          Length = 802

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 211 VKANPFGTNLVSSRHPILLCFHRAPLVR 294
           + +  +G +L+ SRHP++ CF + P ++
Sbjct: 574 IMSEKYGISLLESRHPVVECFLKTPFIK 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,694,706
Number of Sequences: 219361
Number of extensions: 1974857
Number of successful extensions: 5152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5146
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)