ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36j02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P73L_RAT (Q9JJP6) Tumor protein p73-like (p73L) (p63) (Transform... 30 3.3
2P73L_MOUSE (O88898) Tumor protein p73-like (p73L) (p63) (Transfo... 30 3.3
3P73L_HUMAN (Q9H3D4) Tumor protein p73-like (p73L) (p63) (Tumor p... 30 3.3
4ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 29 5.6
5ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 29 5.6
6GAGD2_HUMAN (Q9HD64) G antigen family D 2 protein (XAGE-1 protein) 29 7.3

>P73L_RAT (Q9JJP6) Tumor protein p73-like (p73L) (p63)|
           (Transformation-related protein 63) (TP63) (Keratinocyte
           transcription factor KET)
          Length = 680

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 285 VPPGMVLPAVYLCTPPAPYP 344
           +PP + +P+   CTPP PYP
Sbjct: 525 LPPPLSMPSTSHCTPPPPYP 544



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>P73L_MOUSE (O88898) Tumor protein p73-like (p73L) (p63)|
           (Transformation-related protein 63)
          Length = 680

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 285 VPPGMVLPAVYLCTPPAPYP 344
           +PP + +P+   CTPP PYP
Sbjct: 525 LPPPLSMPSTSHCTPPPPYP 544



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>P73L_HUMAN (Q9H3D4) Tumor protein p73-like (p73L) (p63) (Tumor protein 63)|
           (TP63) (p51) (p40) (Keratinocyte transcription factor
           KET) (Chronic ulcerative stomatitis protein) (CUSP)
          Length = 680

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 285 VPPGMVLPAVYLCTPPAPYP 344
           +PP + +P+   CTPP PYP
Sbjct: 525 LPPPLSMPSTSHCTPPPPYP 544



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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 346 GGYGAGGVHKYTAGSTMPGGTQYYSAYERRQQLGGGSH 233
           GGYG GG      G    GG   Y  Y      GGG++
Sbjct: 287 GGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNY 324



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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 346 GGYGAGGVHKYTAGSTMPGGTQYYSAYERRQQLGGGSH 233
           GGYG GG      G    GG   Y  Y      GGG++
Sbjct: 287 GGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNY 324



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>GAGD2_HUMAN (Q9HD64) G antigen family D 2 protein (XAGE-1 protein)|
          Length = 160

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 82  LQVGLYHAGSRRWAGRQELSSSCGSW 159
           L+VG+ H GSR+   R +L S C +W
Sbjct: 90  LKVGILHLGSRQKKIRIQLRSQCATW 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,669,170
Number of Sequences: 219361
Number of extensions: 894961
Number of successful extensions: 2285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2281
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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