>PPARB_MOUSE (P35396) Peroxisome proliferator-activated receptor delta|
           (PPAR-delta) (PPAR-beta) (Nuclear hormone receptor 1)
           (NUC1)
          Length = 440

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 406 LKKLSEFAGSIVNGASKWLKDNL*LCKYLPHNAFSSTLVMVLS--NLQFFNSSGF 248
           +++L+EFA +I N +S +L D + L KY  H A  + L  +++   L   N SGF
Sbjct: 256 VRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGF 310

>PPARB_HUMAN (Q03181) Peroxisome proliferator-activated receptor delta|
           (PPAR-delta) (PPAR-beta) (Nuclear hormone receptor 1)
           (NUC1) (NUCI)
          Length = 441

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 406 LKKLSEFAGSIVNGASKWLKDNL*LCKYLPHNAFSSTLVMVLS--NLQFFNSSGF 248
           +++L+EFA SI + +S +L D + L KY  H A  + L  +++   L   N SGF
Sbjct: 257 VRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGF 311

>IL4_RAT (P20096) Interleukin-4 precursor (IL-4) (B-cell stimulatory factor|
           1) (BSF-1) (Lymphocyte stimulatory factor 1) (B-cell IGG
           differentiation factor) (B-cell growth factor 1)
          Length = 147

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
 Frame = +3

Query: 198 NLSVATSQARKRCNGSSNPDELKNCRL-DNTITSVEE------NALCGKYLQS 335
           N S    + RK C G S  + L++C + ++T+T++++      + L GKYLQS
Sbjct: 90  NKSGVLGELRKLCRGVSGLNSLRSCTVNESTLTTLKDFLESLKSILRGKYLQS 142

>CYB_BALBN (P41281) Cytochrome b|
          Length = 379

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 170 FLFCFVIPL*IMNFAVVALIFPRACNSRRVTAADSKLDE 54
           F F F++P  I+  A+V LIF R   S   T   S +D+
Sbjct: 179 FAFHFILPFIILALAIVHLIFLRETGSNNPTGIPSDMDK 217

>FTSK_TROW8 (Q83MI4) DNA translocase ftsK|
          Length = 741

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 198 NLSVATSQARKRCNGSSNPDELKNCRLDNTITSVEENALCGKYLQSYR 341
           N SV++S   +   G   PD   + R D T+T +   +L G  +  YR
Sbjct: 205 NSSVSSSSEHQELTGRDMPDTAGDNRHDETVTVLSGTSLTGSPVSEYR 252

>YOO4_CAEEL (P34636) Hypothetical protein ZK507.4|
          Length = 206

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 312 MHSLQR*LWCYPICNSSIHPDSTSRC 235
           M  L++ + C P CN S+HP  T +C
Sbjct: 121 MRKLEKIVPCRPNCNVSVHPHCTRQC 146

>CYB_BALMU (P41285) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 170 FLFCFVIPL*IMNFAVVALIFPRACNSRRVTAADSKLDE 54
           F F F++P  IM  A+V LIF     S   T   S +D+
Sbjct: 179 FAFHFILPFIIMALAIVHLIFLHETGSNNPTGIPSDMDK 217

>FABZ_HAEI8 (Q4QLM4) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase|
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 148

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 266 LQFIRIRRAVASFTGL*SSNGEV*C 192
           +Q I+ RR + SFTG+ + NGE+ C
Sbjct: 115 VQVIKERRGITSFTGVATVNGEIAC 139

>OPN5_HUMAN (Q6U736) Opsin-5 (Neuropsin) (G-protein coupled receptor 136)|
           (G-protein coupled receptor PGR12) (Transmembrane
           protein 13)
          Length = 353

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -1

Query: 188 LILLTPFLFCFVIPL*IMNFAVVALIFPRACNSRRVTAADSKLDEAYIL 42
           + +L    FC ++P  ++ F+ V +I     +S+ V   DS++  +++L
Sbjct: 198 VFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVL 246

>RFBC_MYXXA (Q50864) O-antigen biosynthesis protein rfbC|
          Length = 1275

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 3    YRECPTGKLYVFTKDVSFIELAISSRDSTTVT 98
            YREC  G  ++FT+  S++ L + +   T VT
Sbjct: 1155 YRECDVGLCFMFTRHPSYLPLEMMACGVTVVT 1186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,647,952
Number of Sequences: 219361
Number of extensions: 1089395
Number of successful extensions: 3180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)