>PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 447

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 218 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGL 114
           I DR       H+HV G+QEAEKG + +    KG+
Sbjct: 123 ISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTKKGI 157

>Y4849_ARATH (P16128) Hypothetical protein At4g18490|
          Length = 594

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 21/80 (26%), Positives = 40/80 (50%)
 Frame = -2

Query: 487 NLNATQNPVQLSSSNPLEAYKDLSMGRELSKPTHKLSHTLKCKRKRRSKEFVALSPDVLE 308
           N+ ++ NP   +SS+    +KD S G+ +     ++ H LK + K  ++E   L  ++  
Sbjct: 344 NIGSSLNPTNDTSSHEKIIHKDHSNGKTVENVAGQMDH-LKLQAKNTTREKSILQINISS 402

Query: 307 KADCTVGEDELREKLQSHFA 248
           K D +     L +KL +H +
Sbjct: 403 KLDAS----SLTQKLSNHLS 418

>PRKDC_MOUSE (P97313) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (P460)
          Length = 4128

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
 Frame = -2

Query: 523  LVEWLQNVLSMANL---NATQNPVQLSSSN---PLEAYKDLSMGRELSKPTHKLSHTLKC 362
            L+EW++N +++ +L   N +Q     ++S+   P+  YKD  M  ++S  +   ++ L  
Sbjct: 3802 LIEWIENTMTLKDLLLSNMSQEEKVANNSDPKAPIRDYKDWLM--KVSGKSDAGAYVLMY 3859

Query: 361  KRKRRSKEFVA-------LSPDVLEKADCTVG-EDELREKLQSHFA 248
             R  R++  VA       + PD+L++A   +    E    L+SHFA
Sbjct: 3860 SRANRTETVVAFRRRESQVPPDLLKRAFVKMSTSPEAFLALRSHFA 3905

>AKL1_YEAST (P38080) Serine/threonine-protein kinase AKL1 (EC 2.7.11.1)|
          Length = 1108

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 204 NSVLNLSFSEMPLS---TAK*LCNFSLSSSSPTVQSA 305
           N VLNLS +EM LS   T   + +FS SSSS ++Q A
Sbjct: 840 NGVLNLSLNEMDLSRDDTGAAVSSFSSSSSSASIQQA 876

>ENGA_PSESM (Q886Y6) GTP-binding protein engA|
          Length = 489

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 529 KLLVEWLQNVLSMANLNATQNPVQLS---SSNPLEAYKDLSMGRELSKPTHKLSHTLKCK 359
           K  V +L+N      L     P+++      NP E  K+    R+++K    +SH  K  
Sbjct: 424 KSYVRYLENTYRRV-LKLVGTPIRIEFKGGENPYEGNKNTLTDRQVNKKRRMMSHHKKAD 482

Query: 358 RKRRSK 341
           +KRR K
Sbjct: 483 KKRRDK 488

>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin|
            cytoplasmic domain-associated protein 3) (SEMACAP3
            protein)
          Length = 1062

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 436  EAYKDLSMGRELSKPTHKLSHTLKCKRKRRSKEFVALSP-DVLEKADCTVGEDELREKLQ 260
            +A  ++ MGR  SK   K  H +K K +RR +EF+  S  D L++   +    E+     
Sbjct: 958  DAMSEMKMGRYWSKEERK-QHLVKAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILEL 1016

Query: 259  SHFAVLR 239
            SH  +++
Sbjct: 1017 SHKKMMK 1023

>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin|
            cytoplasmic domain-associated protein 3) (SEMACAP3
            protein)
          Length = 1063

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 436  EAYKDLSMGRELSKPTHKLSHTLKCKRKRRSKEFVALSP-DVLEKADCTVGEDELREKLQ 260
            +A  ++ MGR  SK   K  H +K K +RR +EF+  S  D L++   +    E+     
Sbjct: 959  DAMSEMKMGRYWSKEERK-QHLVKAKEQRRRREFMMQSRLDCLKEQQASDDRKEMNILEL 1017

Query: 259  SHFAVLR 239
            SH  +++
Sbjct: 1018 SHKKMMK 1024

>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146|
          Length = 194

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 130 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSV 279
           +  SC+PF  SC+P    W+T   + +SS+S   +  L +  D A S SV
Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAASASV 179

>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of|
            Numb-protein X 3) (Semaphorin cytoplasmic
            domain-associated protein 3) (SEMACAP3 protein)
          Length = 1066

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 436  EAYKDLSMGRELSKPTHKLSHTLKCKRKRRSKEFVALSP-DVLEKADCTVGEDELREKLQ 260
            +A  ++ MGR  SK   K  H +K K +RR +EF+  S  D L++        E+     
Sbjct: 962  DAVSEMKMGRYWSKEERK-QHLVKAKEQRRRREFMMQSRLDCLKEQQAADDRKEMNILEL 1020

Query: 259  SHFAVLR 239
            SH  +++
Sbjct: 1021 SHKKMMK 1027

>K0555_HUMAN (Q96AA8) Protein KIAA0555|
          Length = 810

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = -2

Query: 508 QNVLSMANLNATQNPVQLSSSNPL---EAYKDLSMGRELSKPTHKLSHTLKCKRKRRSKE 338
           +N   +A LNAT    +L   N L   E  + L   RE  K    L    KC  KR  + 
Sbjct: 283 RNQKRIAELNATIR--KLEDRNTLLGDERNELLKRVRETEKQCKPLLERNKCLAKRNDEL 340

Query: 337 FVALSPDVLEKADCTVGEDELREKLQSH 254
            V+L     +    T    E+REK+ SH
Sbjct: 341 MVSLQRMEEKLKAVTKENSEMREKITSH 368

>ENGA_PSEPK (Q88PJ3) GTP-binding protein engA|
          Length = 487

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 445 NPLEAYKDLSMGRELSKPTHKLSHTLKCKRKRRSK 341
           NP E  K+    R+++K    +SH  K ++KRR K
Sbjct: 452 NPYEGKKNTLTDRQVNKKRRLMSHHKKAEKKRRDK 486

>EF2_SULAC (P23112) Elongation factor 2 (EF-2)|
          Length = 736

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 218 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGLVV 108
           +E+RV P + I+K  + I+E +   QEI+KR   L++
Sbjct: 135 LEERVRPILFINKVDRLIKELKLSSQEIQKRLIDLII 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,924,620
Number of Sequences: 219361
Number of extensions: 1533845
Number of successful extensions: 4771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4769
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)