ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36h08 |
|---|---|
| Clone Library Name | barley_pub |
>TRIP4_MOUSE (Q9QXN3) Activating signal cointegrator 1 (ASC-1) (Thyroid| receptor-interacting protein 4) (Trip-4) Length = 581 Score = 38.5 bits (88), Expect = 0.017 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -2 Query: 599 VLCDAEGVKPIL---DVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVSTALVEA 429 ++C+ EG P L ++C N + + QR +++L+ E SG +VST + Sbjct: 190 IVCEQEGSGPCLFCGSLVCTNEEQDILQRDSNKSQKLLKKLMSGAETSGKVDVSTK--DL 247 Query: 428 FRHGDFRTRQIAERALKHVDKLPNF 354 H + R + E+A+KH +KL F Sbjct: 248 LPHQESRMKSGLEKAIKHKEKLLEF 272
>TRIP4_HUMAN (Q15650) Activating signal cointegrator 1 (ASC-1) (Thyroid| receptor-interacting protein 4) (TRIP-4) Length = 581 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -2 Query: 599 VLCDAEGVKPIL---DVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVSTALVEA 429 ++C+ EG P L ++C + + + QR +++L+ E SG ++ST + Sbjct: 190 IVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTK--DL 247 Query: 428 FRHGDFRTRQIAERALKHVDKLPNF 354 H + R + E+A+KH DKL F Sbjct: 248 LPHQELRIKSGLEKAIKHKDKLLEF 272
>IMA5_HUMAN (O15131) Importin alpha-6 subunit (Karyopherin alpha-5 subunit)| Length = 536 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/82 (29%), Positives = 39/82 (47%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A P L L + E++R+ A W V I + + + N+ Sbjct: 324 GDDIQTQVILNCSA---LPCLLHLLSSPKESIRKEACWTVSNITAGNRAQIQAVIDANIF 380 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 L+E + +FRTR+ A A+ Sbjct: 381 PVLIEILQKAEFRTRKEAAWAI 402
>IMA7_MOUSE (O35345) Importin alpha-7 subunit (Karyopherin alpha-6 subunit)| (Importin alpha S2) Length = 533 Score = 36.6 bits (83), Expect = 0.065 Identities = 23/82 (28%), Positives = 39/82 (47%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A P L L + E++R+ A W + I + + + N+ Sbjct: 321 GDDIQTQVILNCSA---LPCLLHLLSSSKESIRKEACWTISNITAGNRAQIQAVIDANIF 377 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 L+E + +FRTR+ A A+ Sbjct: 378 PVLIEILQKAEFRTRKEAAWAI 399
>IMA7_HUMAN (O60684) Importin alpha-7 subunit (Karyopherin alpha-6)| Length = 536 Score = 36.2 bits (82), Expect = 0.085 Identities = 23/82 (28%), Positives = 39/82 (47%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A P L L + E++R+ A W + I + + + N+ Sbjct: 324 GDDIQTQVILNCSA---LPCLLHLLSSPKESIRKEACWTISNITAGNRAQIQAVIDANIF 380 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 L+E + +FRTR+ A A+ Sbjct: 381 PVLIEILQKAEFRTRKEAAWAI 402
>IMA1_HUMAN (P52294) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)| (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein interactor 1) (NPI-1) Length = 538 Score = 33.1 bits (74), Expect = 0.72 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A ++ +L +L + E++++ A W + I + + + N+ Sbjct: 326 GDDIQTQVILNCSA--LQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANIF 382 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 AL+ + +FRTR+ A A+ Sbjct: 383 PALISILQTAEFRTRKEAAWAI 404
>IMA1_RAT (P83953) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)| (Importin alpha 5) Length = 538 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A ++ +L +L + E++++ A W + I + + + N+ Sbjct: 326 GDDIQTQVILNCSA--LQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANMF 382 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 AL+ + +FRTR+ A A+ Sbjct: 383 PALISILQTAEFRTRKEAAWAI 404
>IMA1_MOUSE (Q60960) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)| (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein interactor 1) (Importin alpha S1) Length = 538 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = -2 Query: 626 GVDIDQGVMVLCDAEGVKPILDVLCENRTEALRQRAVWAVERILRTDEIAYEISGNQNVS 447 G DI V++ C A ++ +L +L + E++++ A W + I + + + N+ Sbjct: 326 GDDIQTQVILNCSA--LQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANMF 382 Query: 446 TALVEAFRHGDFRTRQIAERAL 381 AL+ + +FRTR+ A A+ Sbjct: 383 PALISILQTAEFRTRKEAAWAI 404
>DUT_HHV6Z (P52541) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 376 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 320 PCYA-KVGVLLYRSPADPLEFHKDTKLKYLRMPNLTSINCFPSLTVLAQPL 171 PCY + ++ SP + FH T +++ PN +I CF ++ V A L Sbjct: 236 PCYIPEPWEMINLSPPESAVFHLKTCREFIIKPNSYTIQCFDAMYVCADEL 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,386,842 Number of Sequences: 219361 Number of extensions: 1882251 Number of successful extensions: 5110 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4919 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5094 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
