ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_529529.1| PREDICTED: Pan troglodytes LOC452280 (LOC452280), mRNA Length = 662 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 410 caaggaaacacagagagccaga 431 |||||||||||||||||||||| Sbjct: 118 caaggaaacacagagagccaga 139
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 atgtttcaaggaaacacagaga 425 |||||||||||||||||||||| Sbjct: 16837873 atgtttcaaggaaacacagaga 16837894
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 637 taaacgttgatatatttttctataaa 662 |||| ||||||||||||||||||||| Sbjct: 115360 taaatgttgatatatttttctataaa 115385
>gb|AC009803.17| Homo sapiens 12 BAC RP11-1028N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186044 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 410 caaggaaacacagagagccaga 431 |||||||||||||||||||||| Sbjct: 166019 caaggaaacacagagagccaga 165998
>dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_F01 Length = 119248 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 atgtttcaaggaaacacagaga 425 |||||||||||||||||||||| Sbjct: 51238 atgtttcaaggaaacacagaga 51259
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 55853 gttgatatatttttctataaa 55873
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 94163 gttgatatatttttctataaa 94143 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 74380 gttgatatatttttctataaa 74360
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 20137769 gttgatatatttttctataaa 20137789 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ctccttcacctccacaagct 518 |||||||||||||||||||| Sbjct: 35974547 ctccttcacctccacaagct 35974528 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||| | ||| |||| |||||||||||||||| Sbjct: 34104605 ttttgtattgaaaatgttgttatatttttctataaa 34104570 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||||| ||| ||| |||||||||||||||| Sbjct: 17386884 ttttgtatcggaaatattgttatatttttctataaa 17386849
>gb|AC124710.4| Mus musculus BAC clone RP24-92A2 from chromosome 1, complete sequence Length = 162618 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 aaggtggacagaaagaagaca 462 ||||||||||||||||||||| Sbjct: 133832 aaggtggacagaaagaagaca 133812
>gb|AC133190.2| Mus musculus BAC clone RP23-375H9 from chromosome 10, complete sequence Length = 151273 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ctcttcctggagggcagacct 354 ||||||||||||||||||||| Sbjct: 141050 ctcttcctggagggcagacct 141030
>gb|AC101663.10| Mus musculus chromosome 1, clone RP23-37L1, complete sequence Length = 192592 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 aaggtggacagaaagaagaca 462 ||||||||||||||||||||| Sbjct: 147271 aaggtggacagaaagaagaca 147291
>gb|AC160970.7| Mus musculus BAC clone RP24-492D11 from chromosome 10, complete sequence Length = 205283 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ctcttcctggagggcagacct 354 ||||||||||||||||||||| Sbjct: 68554 ctcttcctggagggcagacct 68534
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| ||||| |||| || ||||||||||||| Sbjct: 54426 attttgtattgtaaatgttgctaaatttttctataaa 54390
>emb|CR932039.2| Medicago truncatula chromosome 5 clone mth2-6h11, COMPLETE SEQUENCE Length = 132508 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 137 gtactatgtatttgcctaattttctgggt 165 |||||||||||||| ||||| |||||||| Sbjct: 96772 gtactatgtatttgtctaatattctgggt 96800
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| |||| ||| ||||||||||||||||| Sbjct: 28854 attttgtattataaatgttaatatatttttctataaa 28818
>tpg|BK005030.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 27 (WRKY27) gene, complete cds Length = 2308 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| | ||| ||| ||||||||||||||||| Sbjct: 1294 attttgtattgaaaatgttaatatatttttctataaa 1330
>gb|AC097486.2| Homo sapiens BAC clone RP11-213L8 from 4, complete sequence Length = 158271 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 caaggaaacacagagagccag 430 ||||||||||||||||||||| Sbjct: 87923 caaggaaacacagagagccag 87943
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| ||||| |||| || ||||||||||||| Sbjct: 23164234 attttgtattgtaaatgttgctaaatttttctataaa 23164198 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 19563714 ttgatatatttttctataaa 19563733
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 7184990 gttgatatatttttctataaa 7184970
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 22733363 gttgatatatttttctataaa 22733343 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 22713580 gttgatatatttttctataaa 22713560
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| |||| ||| ||||||||||||||||| Sbjct: 18321916 attttgtattataaatgttaatatatttttctataaa 18321952 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 15332433 ttgatatatttttctataaa 15332414
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 11108607 gttgatatatttttctataaa 11108627 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 23390204 ttgatatatttttctataaa 23390223
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 20130796 gttgatatatttttctataaa 20130816 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ctccttcacctccacaagct 518 |||||||||||||||||||| Sbjct: 36064621 ctccttcacctccacaagct 36064602 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||| | ||| |||| |||||||||||||||| Sbjct: 34195077 ttttgtattgaaaatgttgttatatttttctataaa 34195042 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||||| ||| ||| |||||||||||||||| Sbjct: 17380425 ttttgtatcggaaatattgttatatttttctataaa 17380390
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| | ||| ||| ||||||||||||||||| Sbjct: 22821934 attttgtattgaaaatgttaatatatttttctataaa 22821898 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||||| ||| ||| |||||||||||||||| Sbjct: 9058210 ttttgtatcgaaaatattgctatatttttctataaa 9058245 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 229088 ttgatatatttttctataaa 229069
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| | ||| ||| ||||||||||||||||| Sbjct: 25491 attttgtattgaaaatgttaatatatttttctataaa 25455
>dbj|AB117754.1| Oryza sativa (indica cultivar-group) DNA, indica specific region near the Rf-1 locus Length = 8200 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| |||| ||| ||||||||||||||||| Sbjct: 4545 attttgtattataaatgttaatatatttttctataaa 4509
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| ||| | ||| ||||||||||||||||| Sbjct: 84754 attttgtatggtagatgttaatatatttttctataaa 84718
>dbj|AP004268.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045F02 Length = 143668 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 91126 gttgatatatttttctataaa 91146
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| | ||| ||| ||||||||||||||||| Sbjct: 139323 attttgtattgaaaatgttaatatatttttctataaa 139287
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| |||| ||| ||||||||||||||||| Sbjct: 18331569 attttgtattataaatgttaatatatttttctataaa 18331605 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 15340674 ttgatatatttttctataaa 15340655
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 23043274 gttgatatatttttctataaa 23043254 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 23023491 gttgatatatttttctataaa 23023471
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 7184869 gttgatatatttttctataaa 7184849
>emb|AL954160.5|CNS08CCY Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121243 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 71125 gttgatatatttttctataaa 71145
>emb|AL831806.5|CNS08CAJ Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141427 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 gttgatatatttttctataaa 662 ||||||||||||||||||||| Sbjct: 41303 gttgatatatttttctataaa 41283
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence Length = 121337 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 626 attttgtatcgtaaacgttgatatatttttctataaa 662 ||||||||| ||||| |||| || ||||||||||||| Sbjct: 2387 attttgtattgtaaatgttgctaaatttttctataaa 2351
>gb|AC102318.8| Mus musculus chromosome 7, clone RP24-447C20, complete sequence Length = 145005 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgtgtctgccctgtttgctc 315 |||||||||||||||||||| Sbjct: 41530 tgtgtctgccctgtttgctc 41511
>gb|AC165256.2| Mus musculus BAC clone RP23-216O10 from chromosome 9, complete sequence Length = 231728 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aagttctgtttgaatcaggg 219 |||||||||||||||||||| Sbjct: 130188 aagttctgtttgaatcaggg 130169
>gb|AY644734.1| Geoffroea spinosa clone Gsp.B331 microsatellite sequence Length = 546 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 314 ttgatatatttttctataaa 295
>gb|AY422167.1| Zea mays enhancer of zeste-like 1 (mez1) gene, complete cds Length = 13084 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 631 gtatcgtaaacgttgatatatttttctataaa 662 |||| ||||| ||| ||||||||||||||||| Sbjct: 5182 gtattgtaaatgttaatatatttttctataaa 5213
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||||| ||| ||| |||||||||||||||| Sbjct: 109261 ttttgtatcggaaatattgttatatttttctataaa 109226
>gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, complete sequence Length = 269788 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 127887 ttgatatatttttctataaa 127906
>gb|AC113031.11| Mus musculus chromosome 14, clone RP23-220B20, complete sequence Length = 250215 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 atttgcctaattttctgggt 165 |||||||||||||||||||| Sbjct: 189301 atttgcctaattttctgggt 189320
>emb|CT010577.7| Mouse DNA sequence from clone RP23-318D14 on chromosome 14, complete sequence Length = 195351 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 atttgcctaattttctgggt 165 |||||||||||||||||||| Sbjct: 24741 atttgcctaattttctgggt 24760
>gb|AC127422.4| Mus musculus BAC clone RP24-383K20 from chromosome 9, complete sequence Length = 198803 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aggtgctgcacttcagaagc 492 |||||||||||||||||||| Sbjct: 31185 aggtgctgcacttcagaagc 31166
>ref|NM_019807.2| Mus musculus acid phosphatase, prostate (Acpp), transcript variant 2, mRNA Length = 2667 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aggtgctgcacttcagaagc 492 |||||||||||||||||||| Sbjct: 29 aggtgctgcacttcagaagc 10
>ref|NM_207668.2| Mus musculus acid phosphatase, prostate (Acpp), transcript variant 1, mRNA Length = 4488 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aggtgctgcacttcagaagc 492 |||||||||||||||||||| Sbjct: 29 aggtgctgcacttcagaagc 10
>emb|AL591803.10| Human DNA sequence from clone RP11-758C21 on chromosome 6 Contains dehydrogenase/reductase (SDR family) member 6 (DHRS6) pseudogene, complete sequence Length = 90325 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 ggtgctgcacttcagaagca 493 |||||||||||||||||||| Sbjct: 74154 ggtgctgcacttcagaagca 74135
>emb|AL138918.17| Human DNA sequence from clone RP1-39J2 on chromosome 6 Contains the 5' end of the gene for smooth muscle cell associated protein 2 (SMAP2) or secreted modular calcium binding protein 2 (SMOC2) and three CpG islands, complete sequence Length = 121059 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tggacagaaagaagacacac 465 |||||||||||||||||||| Sbjct: 92298 tggacagaaagaagacacac 92279
>gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, complete sequence Length = 178119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ctcttcctggagggcagacc 353 |||||||||||||||||||| Sbjct: 12708 ctcttcctggagggcagacc 12689
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ctccttcacctccacaagct 518 |||||||||||||||||||| Sbjct: 36058 ctccttcacctccacaagct 36039
>gb|AC090559.7| Homo sapiens chromosome 11, clone RP11-750H9, complete sequence Length = 202539 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tgaaatgtttcaaggaaaca 419 |||||||||||||||||||| Sbjct: 77821 tgaaatgtttcaaggaaaca 77802
>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5, complete sequence Length = 204925 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gaaatgtttcaaggaaacac 420 |||||||||||||||||||| Sbjct: 35406 gaaatgtttcaaggaaacac 35387
>gb|AC008925.4| Homo sapiens chromosome 5 clone CTD-2284O10, complete sequence Length = 131990 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aagcaacaaataacacaatg 393 |||||||||||||||||||| Sbjct: 48900 aagcaacaaataacacaatg 48919
>emb|BX511023.8| Zebrafish DNA sequence from clone DKEY-148A12 in linkage group 2, complete sequence Length = 244788 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgaaatgtttcaaggaaac 418 |||||||||||||||||||| Sbjct: 173406 ttgaaatgtttcaaggaaac 173425
>gb|AC025771.6| Homo sapiens chromosome 5 clone CTD-2203L19, complete sequence Length = 134286 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 aaaaaggtggacagaaagaa 458 |||||||||||||||||||| Sbjct: 59505 aaaaaggtggacagaaagaa 59486
>gb|AC024589.5| Homo sapiens chromosome 5 clone RP11-42L13, complete sequence Length = 170272 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 aaaaaggtggacagaaagaa 458 |||||||||||||||||||| Sbjct: 28107 aaaaaggtggacagaaagaa 28088
>dbj|AK076383.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732480P03 product:acid phosphatase, prostate, full insert sequence Length = 4486 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aggtgctgcacttcagaagc 492 |||||||||||||||||||| Sbjct: 36 aggtgctgcacttcagaagc 17
>emb|AL662997.3|OSJN00205 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039F02, complete sequence Length = 122499 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 84359 ttgatatatttttctataaa 84378
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 49796 ttgatatatttttctataaa 49777
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||| | ||| |||| |||||||||||||||| Sbjct: 68417 ttttgtattgaaaatgttgttatatttttctataaa 68382
>gb|AC064847.4| Homo sapiens BAC clone RP11-63C2 from 2, complete sequence Length = 138928 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 637 taaacgttgatatatttttctata 660 |||||||||||||||| ||||||| Sbjct: 60183 taaacgttgatatattgttctata 60160
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 627 ttttgtatcgtaaacgttgatatatttttctataaa 662 |||||||||| ||| ||| |||||||||||||||| Sbjct: 87217 ttttgtatcgaaaatattgctatatttttctataaa 87252
>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence Length = 171175 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ctcttcctggagggcagacc 353 |||||||||||||||||||| Sbjct: 101066 ctcttcctggagggcagacc 101047
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 71428 ttgatatatttttctataaa 71447
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 70758 ttgatatatttttctataaa 70739
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 10101 ttgatatatttttctataaa 10120
>dbj|AK070637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056J01, full insert sequence Length = 2649 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 ctccttcacctccacaagct 518 |||||||||||||||||||| Sbjct: 120 ctccttcacctccacaagct 139
>gb|AC160119.3| Mus musculus BAC clone RP23-431F16 from chromosome 9, complete sequence Length = 190900 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 aggtgctgcacttcagaagc 492 |||||||||||||||||||| Sbjct: 114369 aggtgctgcacttcagaagc 114388
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 14440 ttgatatatttttctataaa 14459
>emb|CR974454.17| Mouse DNA sequence from clone CH25-145G14 on chromosome X, complete sequence Length = 65895 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 44447 ttgatatatttttctataaa 44428
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttacagggtcttgaaacctc 32 |||||||||||||||||||| Sbjct: 8745 ttacagggtcttgaaacctc 8726
>gb|J04421.1|YSCPMA2A Saccharomyces cerevisiae ATPase (PMA2) gene, complete cds Length = 5067 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 642 gttgatatatttttctataa 661 |||||||||||||||||||| Sbjct: 4428 gttgatatatttttctataa 4447
>emb|AL844493.6| Mouse DNA sequence from clone RP23-396G18 on chromosome 2, complete sequence Length = 166025 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 ttgatatatttttctataaa 662 |||||||||||||||||||| Sbjct: 92254 ttgatatatttttctataaa 92273
>emb|AJ304861.1|MMU304861 Mus musculus partial Bfsp2 gene for phakinin (CP49 protein), exon 1 Length = 24180 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aagttctgtttgaatcaggg 219 |||||||||||||||||||| Sbjct: 9324 aagttctgtttgaatcaggg 9305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,726,611 Number of Sequences: 3902068 Number of extensions: 6726611 Number of successful extensions: 128269 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127135 Number of HSP's gapped (non-prelim): 1134 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
