| Clone Name | rbaal36e10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 490 bits (247), Expect = e-135 Identities = 396/446 (88%), Gaps = 6/446 (1%) Strand = Plus / Minus Query: 129 gctcacacaggtgtctaccaagggtattccgaccataagattgtcacctcgaattcagca 188 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1749 gctcacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattcagca 1690 Query: 189 ccattgacaccaacaagacgttccacatgcaggccgtcggtggcagttttgaactcaagt 248 |||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||| Sbjct: 1689 tcattgacaccaacaagacgtcctgtatggaggccgtcgatggcagttttgaactcaagc 1630 Query: 249 tggcctctaacaatttcatctccggatccaccacgatgaaggtcaagctcaatcgtcagc 308 | ||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||| Sbjct: 1629 tcgcctctaacaatttcatctccggatccaccatgacgaatgtcaagctcaatcgtgagc 1570 Query: 309 ggtatgtgcaatggcacggcgagtgcatgcctcgccaacggaaccagctcccccggtcgc 368 || ||||||| |||||||| || |||||||||||||| || ||||||||||| |||||| Sbjct: 1569 ggcatgtgcagcggcacggcaagcgcatgcctcgccaaggggaccagctccccaggtcgc 1510 Query: 369 acgtgcactcccttgtcagcggcctccttgtagaagagcacgcaaccgacgtcgaacagc 428 ||| |||||| |||||||||| |||||||||||||| || |||| ||||||||| Sbjct: 1509 acgcgcactc------cagcggcctcgttgtagaagagcacacagccgaaatcgaacagc 1456 Query: 429 ttgctgcgagcaacgatcctgccaacaagatcctcttcgtctcgggactgcaggcgcgca 488 ||||||||||||||||||||||| || ||| || ||||||||||||||||||||| ||| Sbjct: 1455 ttgctgcgagcaacgatcctgccgacgagaaccacttcgtctcgggactgcaggccagca 1396 Query: 489 agcttcacatcgacccggccttggacgccattgctcaggacagcgtagatcacctccgct 548 ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| Sbjct: 1395 agcttcacatcgacccggccttggacgccgttgcttagaactgcgtagatcacctccgcg 1336 Query: 549 gggccgtagcatgtgtggacagtctc 574 |||||| ||| |||| |||||||||| Sbjct: 1335 gggccgcagcgtgtgaggacagtctc 1310 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%), Gaps = 4/83 (4%) Strand = Plus / Minus Query: 11 ttacaaatgtattngaaaatacaaattagtatgtgt----aataaacacttatttttgaa 66 |||||||| |||| ||||||||||||| |||||||| | | |||||||||||| || Sbjct: 1856 ttacaaatatattagaaaatacaaattggtatgtgtcaaggaaagacacttatttttcaa 1797 Query: 67 ctgctagtgagttccatatagta 89 || || |||||||||||||||| Sbjct: 1796 ctcgtactgagttccatatagta 1774
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 188 bits (95), Expect = 1e-44 Identities = 213/251 (84%), Gaps = 6/251 (2%) Strand = Plus / Minus Query: 198 ccaacaagacgttccacatgcaggccgtcggtggcagttttgaactcaagttggcctcta 257 |||||||| |||||| ||| |||||| ||| |||| ||||||||||| |||| | Sbjct: 795 ccaacaagtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctcca 736 Query: 258 acaatttcatctccggatccaccacgatgaaggtcaagctcaatcgtcagcggtatgtgc 317 ||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct: 735 acaatttcatcgccgga---acagcgatgcaggtcaagctcaatcgtcagcggcatgtgc 679 Query: 318 aatggcacggcgagtgcatgcctcgccaacggaaccagctcccccggtcgcacgtgcact 377 | |||||||||||||| | |||||||||| |||||||| ||||||||||||||| |||| Sbjct: 678 agcggcacggcgagtgcttccctcgccaactgaaccagcccccccggtcgcacgttcact 619 Query: 378 cccttgtcagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctgcga 437 || |||||| |||| ||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 618 ccattgtca---ccctctttgtagaagagcacgcagccaacgtcaaacagcttgctgcga 562 Query: 438 gcaacgatcct 448 ||||||||||| Sbjct: 561 gcaacgatcct 551 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 499 cgacccggccttggacgccattgctcaggacagcgtagatcacctccgctgggccgtagc 558 ||||||||||||||||||| ||||||||||| || |||||||| || || ||||| |||| Sbjct: 485 cgacccggccttggacgccgttgctcaggacggcatagatcacttcagcagggccatagc 426 Query: 559 atgtgtggacagtctc 574 || ||||||||||| Sbjct: 425 ccgtttggacagtctc 410
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 188 bits (95), Expect = 1e-44 Identities = 256/310 (82%), Gaps = 6/310 (1%) Strand = Plus / Plus Query: 144 taccaagggtattccgaccataagattgtcacctcgaattcagcaccattgacaccaaca 203 ||||||||||| | ||||||| | |||| ||| || |||||||| ||||| | |||||| Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagcgccattttctccaaca 228 Query: 204 agacgttccacatgcaggccgtcggtggcagttttgaactcaagttggcctctaacaatt 263 || |||||| ||| |||||| ||| |||| ||||||||||| |||| ||||||| Sbjct: 229 agtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctccaacaatt 288 Query: 264 tcatctccggatccaccacgatgaaggtcaagctcaatcgtcagcggtatgtgcaatggc 323 ||||| ||||| || ||||| ||||||||||||||||||||||| ||||||| ||| Sbjct: 289 tcatcgccgga---acagcgatgcaggtcaagctcaatcgtcagcggcatgtgcagcggc 345 Query: 324 acggcgagtgcatgcctcgccaacggaaccagctcccccggtcgcacgtgcactcccttg 383 |||||||| || | |||||||||| ||| ||||| |||||||||| |||||| ||| Sbjct: 346 acggcgagcgcttccctcgccaactgaatcagctnnnnnggtcgcacgttcactccattg 405 Query: 384 tcagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctgcgagcaacg 443 ||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 406 tcacc---ctctttgtagaagagcacgcagccgacgtcgaacagcttgctgcgagcaacg 462 Query: 444 atcctgccaa 453 ||||| |||| Sbjct: 463 atcctcccaa 472 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 499 cgacccggccttggacgccattgctcaggacagcgtagatcacctccgctgggccgtagc 558 ||||||||||||||||||| ||||||||||| || |||||||| || || ||||| |||| Sbjct: 533 cgacccggccttggacgccgttgctcaggacggcatagatcacttcagcggggccatagc 592 Query: 559 atgtgtggacagtctc 574 || ||||||||||| Sbjct: 593 ccgtttggacagtctc 608
>emb|AJ234729.1|HVU234729 Hordeum vulgare genomic DNA fragment; clone MWG2037.uni Length = 328 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 488 aagcttcacatcgacccggccttggacgccattgctcaggacagcgtagatcacctccgc 547 ||||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||| Sbjct: 7 aagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatcacctccgc 66 Query: 548 tgggccgtagcatgtg 563 ||||| |||| |||| Sbjct: 67 ggggccatagcctgtg 82
>gb|AC009292.11| Homo sapiens chromosome 15, clone RP11-34F13, complete sequence Length = 182855 Score = 44.1 bits (22), Expect = 0.50 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 33 aaattagtatgtgtaata-aacacttattt 61 |||||||||||||||||| ||||||||||| Sbjct: 44471 aaattagtatgtgtaatacaacacttattt 44442
>gb|AC160392.2| Mus musculus BAC clone RP23-240E9 from chromosome 9, complete sequence Length = 199695 Score = 44.1 bits (22), Expect = 0.50 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 33 aaattagtatgtgtaata-aacacttattt 61 |||||||||||||||||| ||||||||||| Sbjct: 46116 aaattagtatgtgtaatacaacacttattt 46087
>dbj|AK025177.1| Homo sapiens cDNA: FLJ21524 fis, clone COL05921 Length = 3636 Score = 44.1 bits (22), Expect = 0.50 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 33 aaattagtatgtgtaata-aacacttattt 61 |||||||||||||||||| ||||||||||| Sbjct: 2800 aaattagtatgtgtaatacaacacttattt 2771
>gb|U88177.1| Caenorhabditis elegans cosmid F53E10, complete sequence Length = 26276 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 taaacacttatttttgaactg 69 ||||||||||||||||||||| Sbjct: 10666 taaacacttatttttgaactg 10646
>emb|BX901876.11| Zebrafish DNA sequence from clone CH211-140G2 in linkage group 18, complete sequence Length = 155813 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 atatagtagtatttgtatata 102 ||||||||||||||||||||| Sbjct: 107617 atatagtagtatttgtatata 107597
>emb|BX927136.11| Zebrafish DNA sequence from clone DKEY-98O11 in linkage group 18, complete sequence Length = 93818 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 atatagtagtatttgtatata 102 ||||||||||||||||||||| Sbjct: 37930 atatagtagtatttgtatata 37910
>gb|M89911.1|STMRPLL Streptomyces antibioticus ribosomal proteins L7 and L12 (rplL) gene, complete cds and ribosomal protein L10 (rplJ) gene, complete cds Length = 1451 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 ccttgtcagcggcctccttgt 399 ||||||||||||||||||||| Sbjct: 1163 ccttgtcagcggcctccttgt 1143
>gb|AC161329.3| Dasypus novemcinctus clone VMRC5-459N3, complete sequence Length = 144874 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcacacaggtgtctaccaag 150 |||||||||||||||||||| Sbjct: 25816 tcacacaggtgtctaccaag 25797
>gb|AC069503.25| Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186580 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccaccacgatgaaggtcaag 295 |||||||||||||||||||| Sbjct: 151863 ccaccacgatgaaggtcaag 151844
>gb|AF246928.2| Homo sapiens chromosome 21 clone SCb-318B17 map p11-q21.1, complete sequence Length = 171914 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tatagtagtatttgtatata 102 |||||||||||||||||||| Sbjct: 99482 tatagtagtatttgtatata 99463
>ref|XM_752985.1| Ustilago maydis 521 hypothetical protein (UM01931.1) partial mRNA Length = 5037 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 gacccggccttggacgccat 519 |||||||||||||||||||| Sbjct: 2446 gacccggccttggacgccat 2465
>emb|AL669948.8| Mouse DNA sequence from clone RP23-248K2 on chromosome 11, complete sequence Length = 223030 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tgtaataaacacttattttt 63 |||||||||||||||||||| Sbjct: 9197 tgtaataaacacttattttt 9178
>gb|AC121775.3| Mus musculus BAC clone RP23-356B13 from chromosome 6, complete sequence Length = 188443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 atagctgatagtactccact 126 |||||||||||||||||||| Sbjct: 65721 atagctgatagtactccact 65702
>gb|AC124692.3| Mus musculus BAC clone RP24-159H19 from chromosome 3, complete sequence Length = 180230 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agtatgtgtaataaacactt 57 |||||||||||||||||||| Sbjct: 81952 agtatgtgtaataaacactt 81971
>gb|AC149806.16| Medicago truncatula clone mth2-150h12, complete sequence Length = 113593 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atatagtagtatttgtatat 101 |||||||||||||||||||| Sbjct: 59110 atatagtagtatttgtatat 59129
>emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on chromosome 6, complete sequence Length = 159294 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 aaattagtatgtgtaataaacact 56 ||||||||||||| |||||||||| Sbjct: 98316 aaattagtatgtggaataaacact 98293
>gb|AC084053.6| Mus Musculus Strain C57BL6/J chromosome 3 BAC, RP23-158F1, complete sequence Length = 199415 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 agtatgtgtaataaacactt 57 |||||||||||||||||||| Sbjct: 199298 agtatgtgtaataaacactt 199279
>dbj|AK033660.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130210N15 product:P2Y PURINOCEPTOR 1, full insert sequence Length = 2203 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agtatgtgtaataaacactt 57 |||||||||||||||||||| Sbjct: 1966 agtatgtgtaataaacactt 1985
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 caggacagcgtagatcacct 543 |||||||||||||||||||| Sbjct: 28727141 caggacagcgtagatcacct 28727122 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 tccatatagtagtatttgtatata 102 ||||||||||||||||| |||||| Sbjct: 27326065 tccatatagtagtatttatatata 27326042
>gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence Length = 144092 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cctccttgtagaagagcacg 410 |||||||||||||||||||| Sbjct: 78990 cctccttgtagaagagcacg 78971
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 caggacagcgtagatcacct 543 |||||||||||||||||||| Sbjct: 43714 caggacagcgtagatcacct 43695
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1493_H11 Length = 106693 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 tccatatagtagtatttgtatata 102 ||||||||||||||||| |||||| Sbjct: 40998 tccatatagtagtatttatatata 40975
>dbj|BS000018.1| Pan troglodytes chromosome 22 clone:PTB-080A13, map 22, complete sequences Length = 173559 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tatagtagtatttgtatata 102 |||||||||||||||||||| Sbjct: 7125 tatagtagtatttgtatata 7106
>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete sequence Length = 80442 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 caaattagtatgtgtaataa 51 |||||||||||||||||||| Sbjct: 35048 caaattagtatgtgtaataa 35029
>emb|AL163209.2|HS21C009 Homo sapiens chromosome 21 segment HS21C009 Length = 340000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tatagtagtatttgtatata 102 |||||||||||||||||||| Sbjct: 53782 tatagtagtatttgtatata 53763
>dbj|AP001153.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-886D15, complete sequence Length = 172487 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 tatgtgtaataaacacttattttt 63 |||||||||||||||| ||||||| Sbjct: 71278 tatgtgtaataaacacgtattttt 71255
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 cagcaccattgacaccaacaagac 207 ||||||| |||||||||||||||| Sbjct: 114337 cagcaccgttgacaccaacaagac 114314
>gb|AC140330.3| Mus musculus BAC clone RP23-410I24 from 6, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 atagctgatagtactccact 126 |||||||||||||||||||| Sbjct: 147532 atagctgatagtactccact 147513
>emb|CT009750.2| Medicago truncatula chromosome 5 clone mth2-46a17, COMPLETE SEQUENCE Length = 120704 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cgcacgtgcactcccttgtc 385 |||||||||||||||||||| Sbjct: 18114 cgcacgtgcactcccttgtc 18133
>emb|AJ245636.1|MMU245636 Mus musculus P2Y1 gene for P2Y1 receptor Length = 12630 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agtatgtgtaataaacactt 57 |||||||||||||||||||| Sbjct: 4393 agtatgtgtaataaacactt 4412
>dbj|D50624.1|STMVBRA1 Streptomyces virginiae VbrA gene for NusG like protein, SecE like protein and ribosomal protein, aspartate aminotransferase and adenosine deaminase, complete cds Length = 7409 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ccttgtcagcggcctccttg 398 |||||||||||||||||||| Sbjct: 7135 ccttgtcagcggcctccttg 7116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,138,718 Number of Sequences: 3902068 Number of extensions: 4138718 Number of successful extensions: 71069 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 70974 Number of HSP's gapped (non-prelim): 92 length of query: 574 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 551 effective length of database: 17,143,297,704 effective search space: 9445957034904 effective search space used: 9445957034904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)