ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.56
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.56
3emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in... 44 0.56
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.56
5gb|AC129181.4| Mus musculus chromosome UL clone RP23-325P17, com... 44 0.56
6emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chr... 44 0.56
7gb|AC164074.5| Mus musculus chromosome 5, clone RP23-69E3, compl... 42 2.2
8gb|AY582736.1| Cucumis melo clone BAC 31O16, complete sequence 42 2.2
9gb|AC100737.18| Mus musculus chromosome 7, clone RP24-360I22, co... 42 2.2
10ref|XM_841445.1| Trypanosoma brucei TREU927 hypothetical protein... 42 2.2
11gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosom... 42 2.2
12gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosom... 42 2.2
13gb|AC113004.13| Mus musculus chromosome 5, clone RP23-250M13, co... 42 2.2
14gb|AC079030.13| Homo sapiens 12 BAC RP3-342K15 (Roswell Park Can... 42 2.2
15gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 42 2.2
16gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thali... 42 2.2
17gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 42 2.2
18emb|AJ234671.1|HVU234671 Hordeum vulgare genomic DNA fragment; c... 42 2.2
19gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 2.2
20gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosom... 42 2.2
21gb|AC165077.3| Mus musculus BAC clone RP24-369J8 from chromosome... 42 2.2
22gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.7
23gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, co... 40 8.7
24gb|AY426976.1| Armigeres subalbatus aslectin AL-1 mRNA, complete... 40 8.7
25gb|AY426975.1| Armigeres subalbatus aslectin AL-1 gene, complete... 40 8.7
26gb|U88308.1| Caenorhabditis elegans cosmid C32E8, complete sequence 40 8.7
27emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in ... 40 8.7
28emb|CT009478.9| M.truncatula DNA sequence from clone MTH2-106O21... 40 8.7
29ref|XM_567632.1| Cryptococcus neoformans var. neoformans JEC21 r... 40 8.7
30gb|AC126556.4| Mus musculus BAC clone RP23-64L3 from chromosome ... 40 8.7
31gb|AC091754.4| Papio anubis clone RP41-384C24, complete sequence 40 8.7
32gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence 40 8.7
33gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, comple... 40 8.7
34gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, comple... 40 8.7
35emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in... 40 8.7
36emb|BX255892.3| Human DNA sequence from clone CTD-2176C4 on chro... 40 8.7
37emb|AL662886.6| Human DNA sequence from clone RP13-339K12 on chr... 40 8.7
38emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chr... 40 8.7
39emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 8.7
40gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complet... 40 8.7
41emb|CR450716.5| Zebrafish DNA sequence from clone DKEYP-84G1 in ... 40 8.7
42gb|AC092765.2| Homo sapiens chromosome 1 clone RP11-400N13, comp... 40 8.7
43emb|BX769174.7| Zebrafish DNA sequence from clone DKEY-246O14, c... 40 8.7
44gb|AC006959.1| Homo sapiens chromosome 5, RP1-117N3 (LBNL h74), ... 40 8.7
45gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map... 40 8.7
46dbj|D14049.1|ATHGR Arabidopsis thaliana mRNA for glutathione red... 40 8.7
47gb|AC022874.8| Homo sapiens chromosome 8, clone RP11-396J6, comp... 40 8.7
48gb|AC022861.4| Homo sapiens chromosome 8, clone RP11-343B22, com... 40 8.7
49gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, co... 40 8.7
50gb|AC009626.9| Homo sapiens, clone RP11-319N16, complete sequence 40 8.7
51emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, com... 40 8.7
52emb|BX649281.7| Zebrafish DNA sequence from clone CH211-210H14 i... 40 8.7
53gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O... 40 8.7
54gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.7
55gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, comp... 40 8.7
56gb|AC022079.16|AC022079 Homo sapiens 12 BAC RP11-425D17 (Roswell... 40 8.7
57gb|AC008910.5|AC008910 Homo sapiens chromosome 5 clone CTD-2267A... 40 8.7
58ref|XM_224970.3| PREDICTED: Rattus norvegicus cytoskeleton assoc... 40 8.7
59gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 8.7
60ref|XM_574538.1| PREDICTED: Rattus norvegicus similar to cytoske... 40 8.7
61emb|BX813318.3| Mouse DNA sequence from clone RP23-123N16 on chr... 40 8.7
62dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 8.7
63emb|BX571830.6| Zebrafish DNA sequence from clone DKEY-261I16 in... 40 8.7
64emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in... 40 8.7
65gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.7
66gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, comple... 40 8.7
67emb|CR450734.11| Zebrafish DNA sequence from clone DKEY-53N24 in... 40 8.7
68gb|L27834.1|BOVPAG1A2 Bos taurus pregnancy-associated glycoprote... 40 8.7
69emb|AL670758.9| Mouse DNA sequence from clone RP23-235O16 on chr... 40 8.7

>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
              map S15179S, complete sequence
          Length = 166005

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 347    cagttgcagccccagcagcatc 368
              ||||||||||||||||||||||
Sbjct: 101579 cagttgcagccccagcagcatc 101600



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 347      cagttgcagccccagcagcatc 368
                ||||||||||||||||||||||
Sbjct: 35703801 cagttgcagccccagcagcatc 35703822



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>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15,
             complete sequence
          Length = 164720

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    aaattattttacaatttctttt 118
             ||||||||||||||||||||||
Sbjct: 62882 aaattattttacaatttctttt 62903



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 347      cagttgcagccccagcagcatc 368
                ||||||||||||||||||||||
Sbjct: 35793874 cagttgcagccccagcagcatc 35793895



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>gb|AC129181.4| Mus musculus chromosome UL clone RP23-325P17, complete sequence
          Length = 204520

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 90     agaaacaaaattattttacaatttcttttt 119
              ||||||||||||||||||| |||| |||||
Sbjct: 112569 agaaacaaaattattttactattttttttt 112540



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>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete
              sequence
          Length = 160779

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 96     aaaattattttacaatttctttttgcaaccttct 129
              |||||||||||| || |||| |||||||||||||
Sbjct: 115258 aaaattattttaaaaattctgtttgcaaccttct 115225



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>gb|AC164074.5| Mus musculus chromosome 5, clone RP23-69E3, complete sequence
          Length = 210871

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 289    gcattttttaccagttgcagc 309
              |||||||||||||||||||||
Sbjct: 163819 gcattttttaccagttgcagc 163799



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>gb|AY582736.1| Cucumis melo clone BAC 31O16, complete sequence
          Length = 159477

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    aattattttacaatttctttt 118
             |||||||||||||||||||||
Sbjct: 54134 aattattttacaatttctttt 54154



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>gb|AC100737.18| Mus musculus chromosome 7, clone RP24-360I22, complete sequence
          Length = 148090

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   ttttacaatttctttttgcaa 123
             |||||||||||||||||||||
Sbjct: 63255 ttttacaatttctttttgcaa 63275



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>ref|XM_841445.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.5060)
            partial mRNA
          Length = 1038

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   caaaattattttacaatttct 115
            |||||||||||||||||||||
Sbjct: 987  caaaattattttacaatttct 1007



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>gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosome 8, complete sequence
          Length = 167455

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    ttgcagcagcagacaggaaag 323
              |||||||||||||||||||||
Sbjct: 152681 ttgcagcagcagacaggaaag 152661



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>gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosome 8, complete sequence
          Length = 141671

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    ttgcagcagcagacaggaaag 323
              |||||||||||||||||||||
Sbjct: 140610 ttgcagcagcagacaggaaag 140630



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>gb|AC113004.13| Mus musculus chromosome 5, clone RP23-250M13, complete sequence
          Length = 198820

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 289    gcattttttaccagttgcagc 309
              |||||||||||||||||||||
Sbjct: 163817 gcattttttaccagttgcagc 163797



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>gb|AC079030.13| Homo sapiens 12 BAC RP3-342K15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 99241

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    gggagaaacaaaattatttta 107
             |||||||||||||||||||||
Sbjct: 60403 gggagaaacaaaattatttta 60423



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   gggagaaacaaaattatttt 201
             ||||||||||||||||||||
Sbjct: 60403 gggagaaacaaaattatttt 60422



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 295     tttaccagttgcagcagcaga 315
               |||||||||||||||||||||
Sbjct: 3173209 tttaccagttgcagcagcaga 3173189



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>gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 58738

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 92   aaacaaaattattttacaatttctttttg 120
            |||||| |||||| |||||||||||||||
Sbjct: 9225 aaacaatattattctacaatttctttttg 9197



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>gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150222

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 285   tcaagcattttttaccagttg 305
             |||||||||||||||||||||
Sbjct: 26380 tcaagcattttttaccagttg 26400



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>emb|AJ234671.1|HVU234671 Hordeum vulgare genomic DNA fragment; clone MWG0952.uni
          Length = 602

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 221 tcattttcatcgagaagaaagcgcc 245
           |||||||||| ||||||||||||||
Sbjct: 414 tcattttcattgagaagaaagcgcc 438



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 423     cggcccggtgccgtagacatc 443
               |||||||||||||||||||||
Sbjct: 1604219 cggcccggtgccgtagacatc 1604199



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>gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosome 7, complete
            sequence
          Length = 232098

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 103  ttttacaatttctttttgcaa 123
            |||||||||||||||||||||
Sbjct: 3799 ttttacaatttctttttgcaa 3779



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>gb|AC165077.3| Mus musculus BAC clone RP24-369J8 from chromosome 7, complete sequence
          Length = 179228

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   ttttacaatttctttttgcaa 123
             |||||||||||||||||||||
Sbjct: 72225 ttttacaatttctttttgcaa 72245



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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    ccaggaggaccatgcaacaa 403
              ||||||||||||||||||||
Sbjct: 225017 ccaggaggaccatgcaacaa 225036



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>gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, complete sequence
          Length = 183447

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaaattattttacaatttct 115
             ||||||||||||||||||||
Sbjct: 37663 aaaattattttacaatttct 37644



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>gb|AY426976.1| Armigeres subalbatus aslectin AL-1 mRNA, complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  aaattattttacaatttctt 116
           ||||||||||||||||||||
Sbjct: 910 aaattattttacaatttctt 891



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>gb|AY426975.1| Armigeres subalbatus aslectin AL-1 gene, complete cds
          Length = 3811

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   aaattattttacaatttctt 116
            ||||||||||||||||||||
Sbjct: 3449 aaattattttacaatttctt 3430



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>gb|U88308.1| Caenorhabditis elegans cosmid C32E8, complete sequence
          Length = 43726

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ttattttacaatttcttttt 119
             ||||||||||||||||||||
Sbjct: 38869 ttattttacaatttcttttt 38850



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>emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in linkage group 5,
             complete sequence
          Length = 198456

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    gagaaacaaaattattttacaatt 112
             ||||||||||| ||||||||||||
Sbjct: 79106 gagaaacaaaaatattttacaatt 79129



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>emb|CT009478.9| M.truncatula DNA sequence from clone MTH2-106O21 on chromosome 3,
              complete sequence
          Length = 121373

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    tattttacaatttctttttg 120
              ||||||||||||||||||||
Sbjct: 113272 tattttacaatttctttttg 113253



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>ref|XM_567632.1| Cryptococcus neoformans var. neoformans JEC21 regulation of
           meiosis-related protein (CNK00690) partial mRNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 ccaggaggaccatgcaacaa 403
           ||||||||||||||||||||
Sbjct: 838 ccaggaggaccatgcaacaa 819



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>gb|AC126556.4| Mus musculus BAC clone RP23-64L3 from chromosome 15, complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    caaaattattttacaatttctttt 118
             ||||||||||||| ||||||||||
Sbjct: 28376 caaaattattttaaaatttctttt 28399



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>gb|AC091754.4| Papio anubis clone RP41-384C24, complete sequence
          Length = 192273

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 88     ggagaaacaaaattattttacaat 111
              ||||||||||||||||||| ||||
Sbjct: 177885 ggagaaacaaaattatttttcaat 177908



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    ggagaaacaaaattattttt 202
              ||||||||||||||||||||
Sbjct: 177885 ggagaaacaaaattattttt 177904



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>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence
          Length = 177066

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 88   ggagaaacaaaattattttacaat 111
            ||||||||||||||||||| ||||
Sbjct: 8061 ggagaaacaaaattatttttcaat 8084



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  ggagaaacaaaattattttt 202
            ||||||||||||||||||||
Sbjct: 8061 ggagaaacaaaattattttt 8080



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>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 98    aattattttacaatttctttttgc 121
             ||||||||| ||||||||||||||
Sbjct: 74245 aattatttttcaatttctttttgc 74222



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>gb|AC079791.5| Homo sapiens BAC clone RP11-500M10 from 7, complete sequence
          Length = 103836

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    cagtgcacgggagaaacaaa 98
             ||||||||||||||||||||
Sbjct: 96264 cagtgcacgggagaaacaaa 96245



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cagtgcacgggagaaacaaa 193
             ||||||||||||||||||||
Sbjct: 96264 cagtgcacgggagaaacaaa 96245



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>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8,
             complete sequence
          Length = 203472

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    aaacaaaattattttacaat 111
             ||||||||||||||||||||
Sbjct: 21934 aaacaaaattattttacaat 21953



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>emb|BX255892.3| Human DNA sequence from clone CTD-2176C4 on chromosome X, complete
            sequence
          Length = 11737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    aaattatgtttacaatttct 22
            ||||||||||||||||||||
Sbjct: 7284 aaattatgtttacaatttct 7303



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>emb|AL662886.6| Human DNA sequence from clone RP13-339K12 on chromosome X Contains a
            pseudogene similar to part of p30 (nuclear protein p30)
            and a CpG island, complete sequence
          Length = 63451

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    aaattatgtttacaatttct 22
            ||||||||||||||||||||
Sbjct: 3891 aaattatgtttacaatttct 3910



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>emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 153558

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aaattattttacaatttctt 116
             ||||||||||||||||||||
Sbjct: 58117 aaattattttacaatttctt 58136



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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 514    gatgccgaaccgctttgtcgataa 537
              ||||| ||||||||||||||||||
Sbjct: 819154 gatgctgaaccgctttgtcgataa 819177



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>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence
          Length = 232613

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ttatgtttacaatttctttt 25
              ||||||||||||||||||||
Sbjct: 176687 ttatgtttacaatttctttt 176706



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>emb|CR450716.5| Zebrafish DNA sequence from clone DKEYP-84G1 in linkage group 18,
             complete sequence
          Length = 193900

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   gaatcaagcattttttacca 301
             ||||||||||||||||||||
Sbjct: 67191 gaatcaagcattttttacca 67172



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>gb|AC092765.2| Homo sapiens chromosome 1 clone RP11-400N13, complete sequence
          Length = 188261

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      attatgtttacaatttcttt 24
              ||||||||||||||||||||
Sbjct: 155896 attatgtttacaatttcttt 155915



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>emb|BX769174.7| Zebrafish DNA sequence from clone DKEY-246O14, complete sequence
          Length = 187545

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gaatcaagcattttttacca 301
              ||||||||||||||||||||
Sbjct: 143818 gaatcaagcattttttacca 143837



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>gb|AC006959.1| Homo sapiens chromosome 5, RP1-117N3 (LBNL h74), complete sequence
          Length = 100987

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ttatgtttacaatttctttt 25
             ||||||||||||||||||||
Sbjct: 20353 ttatgtttacaatttctttt 20372



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>gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map CIC06C03, complete
             sequence
          Length = 88068

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ggagaaacaaaattatttta 107
             ||||||||||||||||||||
Sbjct: 43433 ggagaaacaaaattatttta 43452



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>dbj|D14049.1|ATHGR Arabidopsis thaliana mRNA for glutathione reductase, complete cds
          Length = 1993

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  tctttttgcaaccttctcta 132
            ||||||||||||||||||||
Sbjct: 1733 tctttttgcaaccttctcta 1714



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>gb|AC022874.8| Homo sapiens chromosome 8, clone RP11-396J6, complete sequence
          Length = 177513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     caaaattattttacaatttctttt 118
              ||||||||||||||| ||||||||
Sbjct: 172389 caaaattattttacattttctttt 172412



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>gb|AC022861.4| Homo sapiens chromosome 8, clone RP11-343B22, complete sequence
          Length = 148064

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    caaaattattttacaatttctttt 118
             ||||||||||||||| ||||||||
Sbjct: 11839 caaaattattttacattttctttt 11862



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>gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, complete sequence
          Length = 163497

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    gaaacaaaattattttacaa 110
             ||||||||||||||||||||
Sbjct: 68978 gaaacaaaattattttacaa 68959



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>gb|AC009626.9| Homo sapiens, clone RP11-319N16, complete sequence
          Length = 182133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    caaaattattttacaatttctttt 118
             ||||||||||||||| ||||||||
Sbjct: 80619 caaaattattttacattttctttt 80596



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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     agaaacaaaattattttacaattt 113
              |||||||||| |||||||||||||
Sbjct: 226451 agaaacaaaagtattttacaattt 226428



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>emb|BX649281.7| Zebrafish DNA sequence from clone CH211-210H14 in linkage group 17,
             complete sequence
          Length = 157279

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aattattttacaatttcttt 117
             ||||||||||||||||||||
Sbjct: 98839 aattattttacaatttcttt 98858



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>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence
          Length = 114802

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tattttacaatttctttttg 120
             ||||||||||||||||||||
Sbjct: 56473 tattttacaatttctttttg 56492



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     attttacaatttctttttgc 121
               ||||||||||||||||||||
Sbjct: 2493200 attttacaatttctttttgc 2493219



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>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence
          Length = 207974

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     aaaattattttacaatttct 115
              ||||||||||||||||||||
Sbjct: 109999 aaaattattttacaatttct 110018



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>gb|AC022079.16|AC022079 Homo sapiens 12 BAC RP11-425D17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181193

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aaaattatgtttacaatttc 21
             ||||||||||||||||||||
Sbjct: 67277 aaaattatgtttacaatttc 67258



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>gb|AC008910.5|AC008910 Homo sapiens chromosome 5 clone CTD-2267A1, complete sequence
          Length = 78303

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tattttacaatttctttttg 120
             ||||||||||||||||||||
Sbjct: 12396 tattttacaatttctttttg 12415



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>ref|XM_224970.3| PREDICTED: Rattus norvegicus cytoskeleton associated protein 2
            (predicted) (Ckap2_predicted), mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  cagcagacaggaaagctcag 328
            ||||||||||||||||||||
Sbjct: 1088 cagcagacaggaaagctcag 1107



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 558    tgcgcgcacgcggcgcttgc 577
              ||||||||||||||||||||
Sbjct: 137442 tgcgcgcacgcggcgcttgc 137423



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>ref|XM_574538.1| PREDICTED: Rattus norvegicus similar to cytoskeleton associated
            protein 2 (LOC499245), mRNA
          Length = 2345

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  cagcagacaggaaagctcag 328
            ||||||||||||||||||||
Sbjct: 1391 cagcagacaggaaagctcag 1410



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>emb|BX813318.3| Mouse DNA sequence from clone RP23-123N16 on chromosome 2, complete
             sequence
          Length = 66128

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 348   agttgcagccccagcagcatctgc 371
             |||||||||||||||| |||||||
Sbjct: 46447 agttgcagccccagcaccatctgc 46424



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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 514    gatgccgaaccgctttgtcgataa 537
              ||||| ||||||||||||||||||
Sbjct: 882511 gatgctgaaccgctttgtcgataa 882534



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>emb|BX571830.6| Zebrafish DNA sequence from clone DKEY-261I16 in linkage group 19,
             complete sequence
          Length = 143486

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    agaaacaaaattattttaca 109
             ||||||||||||||||||||
Sbjct: 37797 agaaacaaaattattttaca 37816



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>emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in linkage group 20,
             complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   aaacaaaattatttttgccc 206
             ||||||||||||||||||||
Sbjct: 52825 aaacaaaattatttttgccc 52806



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     cggccagttgcagccccagc 362
               ||||||||||||||||||||
Sbjct: 2762825 cggccagttgcagccccagc 2762844



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>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    aattattttacaatttctttttgc 121
             ||||||||| ||||||||||||||
Sbjct: 84426 aattatttttcaatttctttttgc 84449



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>emb|CR450734.11| Zebrafish DNA sequence from clone DKEY-53N24 in linkage group 5,
            complete sequence
          Length = 73893

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    caaaattatgtttacaatttcttt 24
            ||||||||||||||||||| ||||
Sbjct: 3117 caaaattatgtttacaattgcttt 3140



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>gb|L27834.1|BOVPAG1A2 Bos taurus pregnancy-associated glycoprotein-1 (PAG1), exons 7 and
           8
          Length = 754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 cagccccagcagcatctgca 372
           ||||||||||||||||||||
Sbjct: 746 cagccccagcagcatctgca 727



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>emb|AL670758.9| Mouse DNA sequence from clone RP23-235O16 on chromosome X, complete
             sequence
          Length = 144854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    aaaattattttacaatttcttttt 119
             ||||| ||||||||||||||||||
Sbjct: 61527 aaaataattttacaatttcttttt 61550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,372,178
Number of Sequences: 3902068
Number of extensions: 6372178
Number of successful extensions: 138253
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137826
Number of HSP's gapped (non-prelim): 427
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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