ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35o13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 329 2e-87
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 329 2e-87
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 287 6e-75
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 188 4e-45
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 186 2e-44
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 121 7e-25
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 117 1e-23
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 107 1e-20
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 107 1e-20
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 107 1e-20
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 107 1e-20
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 107 1e-20
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 107 1e-20
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 107 1e-20
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 96 4e-17
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 4e-17
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 92 7e-16
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
24gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 54 1e-04
25gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 54 1e-04
26gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 54 1e-04
27gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 54 1e-04
28dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
29emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.14
30gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 0.56
31gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 0.56
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.56
33gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.56
34emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.56
35gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 0.56
36gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 2.2
37gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 2.2
38gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 2.2
39gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 2.2
40gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 2.2
41dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 2.2
42emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 2.2
43gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 2.2
44gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 2.2
45gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal... 38 8.7
46gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence 38 8.7
47gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 8.7
48emb|CR382386.8| Zebrafish DNA sequence from clone DKEY-111O10 in... 38 8.7
49emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 8.7
50gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome... 38 8.7
51emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230... 38 8.7
52gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome... 38 8.7
53gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 8.7
54gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2... 38 8.7
55gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 38 8.7
56emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chrom... 38 8.7
57emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in... 38 8.7
58gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 8.7
59emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in... 38 8.7
60gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 8.7
61gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cance... 38 8.7
62gb|AC093742.3| Homo sapiens BAC clone RP11-24M8 from 4, complete... 38 8.7
63dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 8.7
64emb|BX663611.13| Zebrafish DNA sequence from clone DKEY-148N20 i... 38 8.7
65gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 38 8.7
66gb|AC025782.7|AC025782 Arabidopsis thaliana chromosome 1 BAC T15... 38 8.7
67gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosom... 38 8.7
68gb|AC161282.5| Pan troglodytes BAC clone CH251-381O9 from chromo... 38 8.7
69gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 38 8.7
70gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 38 8.7
71emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, ... 38 8.7
72dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
73dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
74emb|BX548013.3| Mouse DNA sequence from clone RP23-452C18 on chr... 38 8.7
75emb|CR937049.3| CH230-323M7, complete sequence 38 8.7
76emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-7... 38 8.7
77emb|AL929336.12| Zebrafish DNA sequence from clone CH211-163J21,... 38 8.7 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  329 bits (166), Expect = 2e-87
 Identities = 169/170 (99%)
 Strand = Plus / Minus

                                                                        
Query: 8    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 67
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 7693

                                                                        
Query: 68   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 7633

                                                              
Query: 128  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 7583
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  329 bits (166), Expect = 2e-87
 Identities = 169/170 (99%)
 Strand = Plus / Minus

                                                                        
Query: 8    aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 67
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 68   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                              
Query: 128  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 1223
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  287 bits (145), Expect = 6e-75
 Identities = 169/173 (97%), Gaps = 3/173 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 66
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 67   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 125
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                 
Query: 126  gtgtaaaggcagctgccg-tcgtcgctccttgccgttgggtcgtagttcttgg 177
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  188 bits (95), Expect = 4e-45
 Identities = 155/172 (90%), Gaps = 11/172 (6%)
 Strand = Plus / Minus

                                                                       
Query: 12  ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 71
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 72  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 125
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                               
Query: 126 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 177
           ||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttgg 598
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  186 bits (94), Expect = 2e-44
 Identities = 138/150 (92%), Gaps = 7/150 (4%)
 Strand = Plus / Minus

                                                                        
Query: 34   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 87
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 88   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 147
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                          
Query: 148  cgctccttgccgttgggtcgtagttcttgg 177
            | ||||| |||||||||||| |||||||||
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttgg 1448
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  121 bits (61), Expect = 7e-25
 Identities = 120/137 (87%), Gaps = 7/137 (5%)
 Strand = Plus / Minus

                                                                        
Query: 48   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 101
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 102  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 160
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                             
Query: 161  tgggtcgtagttcttgg 177
            ||||||| |||||||||
Sbjct: 1473 tgggtcgaagttcttgg 1457
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  117 bits (59), Expect = 1e-23
 Identities = 68/71 (95%)
 Strand = Plus / Minus

                                                                        
Query: 107  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 166
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                       
Query: 167  gtagttcttgg 177
            | |||||||||
Sbjct: 1429 gaagttcttgg 1419
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                          
Query: 116    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                
Query: 176    gg 177
              ||
Sbjct: 107218 gg 107219



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 134    gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
              ||||||||||||||||||||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                         
Query: 116   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

               
Query: 176   gg 177
             ||
Sbjct: 29099 gg 29100



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 134   gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
             ||||||||||||||||||||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

              
Query: 176  gg 177
            ||
Sbjct: 1460 gg 1459
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

              
Query: 176  gg 177
            ||
Sbjct: 1370 gg 1369
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                            
Query: 116      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                  
Query: 176      gg 177
                ||
Sbjct: 28302361 gg 28302362



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 134      gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

              
Query: 176  gg 177
            ||
Sbjct: 1454 gg 1453
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

              
Query: 176  gg 177
            ||
Sbjct: 1492 gg 1491
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

              
Query: 176  gg 177
            ||
Sbjct: 1491 gg 1490
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

              
Query: 176  gg 177
            ||
Sbjct: 1275 gg 1274
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                            
Query: 116      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                  
Query: 176      gg 177
                ||
Sbjct: 28284810 gg 28284811



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 134      gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

              
Query: 176  gg 177
            ||
Sbjct: 1496 gg 1495
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  107 bits (54), Expect = 1e-20
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

              
Query: 176  gg 177
            ||
Sbjct: 1405 gg 1404
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                   
Query: 122 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 177
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 38
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 116  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcg 167
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg 1511
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 91.7 bits (46), Expect = 7e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 116 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 175
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

             
Query: 176 gg 177
           ||
Sbjct: 75  gg 74
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                  
Query: 116     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 166
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtc 4541363



 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 135      cagctgccgtcgtcgctcc 153
                |||||||||||||||||||
Sbjct: 13186146 cagctgccgtcgtcgctcc 13186128
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 126  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagtt 1404
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 126  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagtt 1229
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 126  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagtt 1103
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 126  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 172
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagtt 1259
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 116   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 166
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtc 84737
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    aatatatttagagatatattaa 42
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    tatatttagagatatattaac 43
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tatatttagagatatattaac 43
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 92      aaacatcagatattaaaagtg 112
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 92      aaacatcagatattaaaagtg 112
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     aaacatcagatattaaaagtg 112
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   tatatttagagatatattaac 43
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tcagatattaaaagtggcat 116
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
to top
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tcagatattaaaagtggcat 116
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tcagatattaaaagtggcat 116
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
to top
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aatatatttagagatatatt 40
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
to top
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 125  ggtgtaaaggcagctgccgtcgtcgctc 152
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
to top
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    aaacatgcccagcaatcgcttgga 68
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
to top
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   tggcatgcttaaaaggtgta 130
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
to top
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aatatatttagagatatatt 40
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
to top
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     atcagatattaaaagtggcatgct 119
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852
to top
>gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal RNA gene, partial
           sequence
          Length = 1463

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 89  gtaaaacatcagatattaa 107
           |||||||||||||||||||
Sbjct: 183 gtaaaacatcagatattaa 165
to top
>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence
          Length = 181948

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 82     taggtaggtaaaacatcag 100
              |||||||||||||||||||
Sbjct: 151143 taggtaggtaaaacatcag 151125
to top
>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 102    tattaaaagtggcatgcttaaaa 124
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580
to top
>emb|CR382386.8| Zebrafish DNA sequence from clone DKEY-111O10 in linkage group 14,
              complete sequence
          Length = 162528

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     aatatatttagagatatat 39
              |||||||||||||||||||
Sbjct: 126665 aatatatttagagatatat 126647
to top
>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   aaagtggcatgcttaaaag 125
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925
to top
>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence
          Length = 171069

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     taggtaaaacatcagatat 104
              |||||||||||||||||||
Sbjct: 126442 taggtaaaacatcagatat 126424
to top
>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   aaacatcagatattaaaag 110
            |||||||||||||||||||
Sbjct: 3858 aaacatcagatattaaaag 3876
to top
>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    gtaaaacatcagatattaa 107
             |||||||||||||||||||
Sbjct: 48495 gtaaaacatcagatattaa 48513
to top
>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 99    agatattaaaagtggcatgctta 121
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546
to top
>gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete
             sequence
          Length = 254449

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    atatatttagagatatattaaca 44
             |||||||| ||||||||||||||
Sbjct: 88941 atatatttcgagatatattaaca 88963
to top
>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
             sequence
          Length = 250029

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 25    tatttagagatatattaacaaaa 47
             ||||||||||| |||||||||||
Sbjct: 36880 tatttagagatttattaacaaaa 36858
to top
>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 109088

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    tgggtatactcaatatatt 28
             |||||||||||||||||||
Sbjct: 39042 tgggtatactcaatatatt 39024
to top
>emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in linkage group 20
            Contains part of the gene for a novel protein similar to
            rat kinase D-interacting substance of 220 kDa
            (RGD:619949), complete sequence
          Length = 42729

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 35   tatattaacaaaacatgcc 53
            |||||||||||||||||||
Sbjct: 9802 tatattaacaaaacatgcc 9820
to top
>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 102    tattaaaagtggcatgcttaaaa 124
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386
to top
>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22,
              complete sequence
          Length = 191642

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 82     taggtaggtaaaacatcag 100
              |||||||||||||||||||
Sbjct: 151077 taggtaggtaaaacatcag 151059
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 70      gcgatgcggacttaggtag 88
               |||||||||||||||||||
Sbjct: 2937451 gcgatgcggacttaggtag 2937469
to top
>gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115000

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 21    aatatatttagagatatattaacaaaa 47
             |||||||||||||| ||||| ||||||
Sbjct: 26766 aatatatttagagaaatatttacaaaa 26792
to top
>gb|AC093742.3| Homo sapiens BAC clone RP11-24M8 from 4, complete sequence
          Length = 114455

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 22     atatatttagagatatattaaca 44
              ||||||||||| |||||||||||
Sbjct: 102503 atatatttagatatatattaaca 102481
to top
>dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930027O03 product:weakly similar to L1
           RETROTRANSPOSON, TF SUBFAMILY L1MD-TF29, PARTIAL
           SEQUENCE [Mus musculus domesticus], full insert sequence
          Length = 4205

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  ggtaaaacatcagatatta 106
           |||||||||||||||||||
Sbjct: 712 ggtaaaacatcagatatta 694
to top
>emb|BX663611.13| Zebrafish DNA sequence from clone DKEY-148N20 in linkage group 14,
             complete sequence
          Length = 213131

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    aatatatttagagatatat 39
             |||||||||||||||||||
Sbjct: 75565 aatatatttagagatatat 75583
to top
>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    aaaacatcagatattaaaa 109
             |||||||||||||||||||
Sbjct: 68501 aaaacatcagatattaaaa 68519
to top
>gb|AC025782.7|AC025782 Arabidopsis thaliana chromosome 1 BAC T15P17 genomic sequence, complete
             sequence
          Length = 97899

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 25    tatttagagatatattaacaaaa 47
             |||||||| ||||||||||||||
Sbjct: 76433 tatttagaaatatattaacaaaa 76411
to top
>gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosome 14, complete sequence
          Length = 212894

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     taggtaaaacatcagatat 104
              |||||||||||||||||||
Sbjct: 200300 taggtaaaacatcagatat 200318
to top
>gb|AC161282.5| Pan troglodytes BAC clone CH251-381O9 from chromosome unknown, complete
             sequence
          Length = 172427

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    tcaatatatttagagatat 37
             |||||||||||||||||||
Sbjct: 55217 tcaatatatttagagatat 55199
to top
>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete
             sequence
          Length = 177886

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    ggtaaaacatcagatatta 106
             |||||||||||||||||||
Sbjct: 55690 ggtaaaacatcagatatta 55708
to top
>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     aaaacatcagatattaaaa 109
              |||||||||||||||||||
Sbjct: 109395 aaaacatcagatattaaaa 109413
to top
>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     aatatatttagagatatat 39
              |||||||||||||||||||
Sbjct: 108768 aatatatttagagatatat 108750
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0055N01
          Length = 154783

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 135  cagctgccgtcgtcgctcc 153
            |||||||||||||||||||
Sbjct: 7580 cagctgccgtcgtcgctcc 7562
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    cagctgccgtcgtcgctcc 153
              |||||||||||||||||||
Sbjct: 108236 cagctgccgtcgtcgctcc 108218
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>emb|BX548013.3| Mouse DNA sequence from clone RP23-452C18 on chromosome X, complete
             sequence
          Length = 14756

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    aatatatttagagatatat 39
             |||||||||||||||||||
Sbjct: 10252 aatatatttagagatatat 10234
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>emb|CR937049.3| CH230-323M7, complete sequence
          Length = 198674

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    aaacatcagatattaaaag 110
             |||||||||||||||||||
Sbjct: 21429 aaacatcagatattaaaag 21411
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>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174273

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     tcaatatatttagagatat 37
              |||||||||||||||||||
Sbjct: 132817 tcaatatatttagagatat 132799
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>emb|AL929336.12| Zebrafish DNA sequence from clone CH211-163J21, complete sequence
          Length = 156284

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    aatatatttagagatatat 39
             |||||||||||||||||||
Sbjct: 39904 aatatatttagagatatat 39886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,501,669
Number of Sequences: 3902068
Number of extensions: 1501669
Number of successful extensions: 113500
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113015
Number of HSP's gapped (non-prelim): 479
length of query: 177
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 155
effective length of database: 17,147,199,772
effective search space: 2657815964660
effective search space used: 2657815964660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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