>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 275 GRRGREARDPPYPEVADPFLEVGSSDMRC 361
           G+R RE R+ PY EV + FL++   +  C
Sbjct: 474 GKRQREQRERPYKEVTEDFLQLEKQETPC 502

>Y752_METJA (Q58162) Hypothetical protein MJ0752|
          Length = 76

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 149 WQNNHFPRYHYYQCHASCLVS 87
           W+   +P+YH + CH++C V+
Sbjct: 53  WKEKWYPKYHTHYCHSACRVA 73

>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -1

Query: 460 GCGAAKDQSRCFCHPQVPCPIVVVFVDE*RSSSTPHI*APHLQ--EWVRYLRIWRIPRFP 287
           GCGAA+ Q++      + C +    + E R+    H     LQ  EW R +R+ R+    
Sbjct: 243 GCGAAQAQAQAEARDALKCDVTSA-LREIRAQLEGHTVQSTLQSEEWFR-VRLDRLSEAA 300

Query: 286 AAPPDGIASAFEFVTEFCKRV 224
               D + SA E +TE+ +++
Sbjct: 301 KVNTDAMRSAQEEITEYRRQL 321

>NOXO1_MOUSE (Q8VCM2) NADPH oxidase organizer 1 (Nox organizer 1) (Sorting|
           nexin-28)
          Length = 349

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 567 LCFVSPCQGILPPMVLQPWPRGSFMSRPDATNGHRLDAELPRTRAVVSAIPKSHALSWLS 388
           LC  +   G+LP M LQP   GS + RP   +    D ++   R +   +P    +S + 
Sbjct: 270 LCRYNGRTGLLPAMSLQPEGLGSLLGRPGFPDSAGAD-KVAEDRTIPPVVPTRPCMSAIQ 328

Query: 387 S 385
           S
Sbjct: 329 S 329

>NFH_MOUSE (P19246) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1090

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -1

Query: 460 GCGAAKDQSRCFCHPQVPCPIVVVFVDE*RSSSTPHI*APHLQ--EWVRYLRIWRIPRFP 287
           GCGAA+ Q++      + C +    + E R+    H     LQ  EW R +R+ R+    
Sbjct: 245 GCGAAQAQAQAEARDALKCDVTSA-LREIRAQLEGHAVQSTLQSEEWFR-VRLDRLSEAA 302

Query: 286 AAPPDGIASAFEFVTEFCKRV 224
               D + SA E +TE+ +++
Sbjct: 303 KVNTDAMRSAQEEITEYRRQL 323

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 24.6 bits (52), Expect(2) = 10.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 464 AWMRSCQGPEPLFLPSPSPMP 402
           A M S + P PL  P+PSP P
Sbjct: 642 AAMTSAEHPTPLNPPTPSPTP 662



 Score = 22.7 bits (47), Expect(2) = 10.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 520 PAMAPRLVHEQT*RDERPSLGC 455
           P ++P L+H    R+  P  GC
Sbjct: 610 PTLSPHLIHPPLTREPSPLNGC 631


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,820,399
Number of Sequences: 219361
Number of extensions: 1696380
Number of successful extensions: 5350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5342
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)