ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal36d08 |
|---|---|
| Clone Library Name | barley_pub |
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 35.0 bits (79), Expect = 0.21 Identities = 18/70 (25%), Positives = 28/70 (40%) Frame = +3 Query: 189 PPWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSV 368 PP T T T+T C PP TT C ++S+P+ P + P P+ Sbjct: 42 PPCTTTTTTTTTTCAPPTQQSTTQPPC-TTSKPTTPKQTTTQLPCTTPTTTKATTTKPTT 100 Query: 369 WEMISQSSLT 398 + + + T Sbjct: 101 TKATTTKATT 110
>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2| Length = 1030 Score = 34.3 bits (77), Expect = 0.35 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Frame = -3 Query: 421 EKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPE 242 E+ + + R+ +++ D + + LP +V A+ GK LLD + T V E Sbjct: 497 EQETEESGARKTTQMVEDADAESLQT---LPPVVTAMGHVDHGKTTLLDAIRKTRVAAGE 553 Query: 241 SGG-RQHVEVRAVGVSHGG 188 +GG QH+ V V H G Sbjct: 554 AGGITQHIGAYHVDVEHNG 572
>Y1332_METJA (Q58728) Hypothetical GTP-binding protein MJ1332| Length = 393 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -3 Query: 466 DYVILPTIYEIE---KHHEKRGDVTSVREDWEIISHTDGDEAKRPA 338 DY+++PT EIE K EK G + D+EII + +E R A Sbjct: 240 DYIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRA 285
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 31.6 bits (70), Expect = 2.3 Identities = 32/151 (21%), Positives = 49/151 (32%) Frame = +3 Query: 192 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 371 P T T+ TST P + T+T S++ + + + PT S Sbjct: 138 PTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTT 197 Query: 372 EMISQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTI 551 S +S T TS T + P S T T T Sbjct: 198 PTTSTTSTTPTTSTT---------STTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTT 248 Query: 552 PRWSAATPILATASRPSAFADSAGTDPSPST 644 P S+ + T++ P+ + T P+ ST Sbjct: 249 PTTSSTSTTPTTSTTPT--TSTTSTAPTTST 277
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 31.6 bits (70), Expect = 2.3 Identities = 34/151 (22%), Positives = 57/151 (37%) Frame = +3 Query: 192 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 371 P TP++ T+ P++ TT + A PS + ++ SAP V Sbjct: 484 PVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVT 543 Query: 372 EMISQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTI 551 ++SS V +P S S S V T P S T + S + Sbjct: 544 SSTTESSSAPVPTPSSSTTESSSTPVTSST----TESSSAPVPTPSSSTTESS---SAPV 596 Query: 552 PRWSAATPILATASRPSAFADSAGTDPSPST 644 P S++T ++A P+ + + + +P T Sbjct: 597 PTPSSSTTESSSAPAPTPSSSTTESSSAPVT 627 Score = 30.4 bits (67), Expect = 5.1 Identities = 34/151 (22%), Positives = 56/151 (37%) Frame = +3 Query: 192 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 371 P TP++ T+ P++ TT + A PS + ++ SAP P+ Sbjct: 457 PVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPS 516 Query: 372 EMISQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTI 551 ++SS +P S S S V T P+ S + S T Sbjct: 517 SSTTESSSAPAPTPSSSTTESSSAPVTSST--TESSSAPVPTPSSSTTESSSTPVTSSTT 574 Query: 552 PRWSAATPILATASRPSAFADSAGTDPSPST 644 SA P ++++ S S+ P+PS+ Sbjct: 575 ESSSAPVPTPSSSTTES----SSAPVPTPSS 601
>IF2_OCEIH (Q8EQU1) Translation initiation factor IF-2| Length = 692 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -3 Query: 397 VREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHV 221 + ED ++ + + D + E PA+V + GK LLD + T V E+GG QH+ Sbjct: 173 ILEDTDLDKYIEEDAEENLQERPAVVTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHI 232
>IF2_CARHZ (Q3AB98) Translation initiation factor IF-2| Length = 827 Score = 31.2 bits (69), Expect = 3.0 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = -3 Query: 442 YEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQA 263 YE+ E++ D+ W + D E+ P P +V + GK LLD + Sbjct: 299 YEVTVEKEEKEDI------WLLEETPDDPESLEPR--PPIVTVMGHVDHGKTSLLDAIRQ 350 Query: 262 TVVVHPESGG-RQHVEVRAVGVSHGG 188 T V E+GG QH + A V H G Sbjct: 351 TNVTATEAGGITQH--IGAYQVEHNG 374
>EFG1_GEOSL (Q74A61) Elongation factor G 1 (EF-G 1)| Length = 689 Score = 30.8 bits (68), Expect = 3.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 382 EIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEA 269 E+I+ DGD+ + + P L A+REG+D + + A Sbjct: 181 ELITFADGDQGRTVSRGPVPADLLDAAREGRDAVAEAA 218
>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1| Length = 959 Score = 30.8 bits (68), Expect = 3.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 559 HRGIVCDHHVFRIVQHWLHAGEPD 488 H V D V R+V+HW GEP+ Sbjct: 845 HGAFVADEEVHRVVEHWKQFGEPE 868
>IF2_HELPY (P55972) Translation initiation factor IF-2| Length = 944 Score = 30.4 bits (67), Expect = 5.1 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -3 Query: 469 NDYVILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGK 290 ND++ +I + + V + E++E+ +G + +RP +V + GK Sbjct: 403 NDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPP----VVTIMGHVDHGK 458 Query: 289 DGLLDEAQATVVVHPESGG-RQHV 221 LLD+ + V H E+GG QH+ Sbjct: 459 TSLLDKIRDKRVAHTEAGGITQHI 482
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 30.4 bits (67), Expect = 5.1 Identities = 37/149 (24%), Positives = 56/149 (37%) Frame = +3 Query: 201 TPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVWEMI 380 T T LTST P + TTT ++SS + + T+ PS + Sbjct: 395 TTTMLTSTTTEEPSTSTTTTEVTSTSSTVT----TTEPTTTLTTSTASTSTTEPSTSTVT 450 Query: 381 SQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTIPRW 560 + S + VTS S S + + + P+ + + S T P Sbjct: 451 TSPSTSPVTSTVTSSSSSSTTVT-----TPTSTESTSTSPSSTVTTSTTAPSTSTTGPSS 505 Query: 561 SAATPILATASRPSAFADSAGTDPSPSTQ 647 S++TP +S S+ A S T S STQ Sbjct: 506 SSSTPSSTASSSVSSTASS--TQSSTSTQ 532
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 5.1 Identities = 22/75 (29%), Positives = 28/75 (37%) Frame = +3 Query: 189 PPWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSV 368 PP TP+ T+T PP+ TTT ++ PS P S PT S Sbjct: 1652 PPTTTPSPPTTTTPSPPI---TTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSP 1708 Query: 369 WEMISQSSLTDVTSP 413 + S T SP Sbjct: 1709 ITTTTTPSSTTTPSP 1723
>IF2_HELPJ (Q9ZM46) Translation initiation factor IF-2| Length = 949 Score = 30.4 bits (67), Expect = 5.1 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -3 Query: 469 NDYVILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGK 290 ND++ +I + + V + E++E+ +G + +RP +V + GK Sbjct: 408 NDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPP----VVTIMGHVDHGK 463 Query: 289 DGLLDEAQATVVVHPESGG-RQHV 221 LLD+ + V H E+GG QH+ Sbjct: 464 TSLLDKIRDKRVAHTEAGGITQHI 487
>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2| Length = 836 Score = 30.0 bits (66), Expect = 6.6 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Frame = -3 Query: 388 DWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVR 212 D E + T D+A+ P ++ + GK LLD + T VV E+GG QH+ Sbjct: 316 DVEHVIDTVEDKAEDLQPRPPIITIMGHVDHGKTSLLDAIRKTSVVSGEAGGITQHIGAY 375 Query: 211 AVGVSHGG*LRGLLQYLSS*GDCTYCKPLMHIRCGQV 101 V G +L +L + G + M R QV Sbjct: 376 QVKTESG----AVLTFLDTPGHAAFTS--MRARGAQV 406
>NOS1_ARATH (Q66GP9) Nitric-oxide synthase 1 (EC 1.14.13.39) (AtNOS1)| Length = 561 Score = 30.0 bits (66), Expect = 6.6 Identities = 24/83 (28%), Positives = 34/83 (40%) Frame = +2 Query: 197 ADSNSPDFHMLPASALRVDHHSGLRLVQQAILTLTRCRQRTNHGGELGRSFGLVAVSVGD 376 +D +SP F L L+ HH ++ L+ T GG G G VS + Sbjct: 118 SDVDSPGFVDLVTYELKKKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADE 177 Query: 377 DLPVLPHRRDVATFLVVLLDLVD 445 L H R +V L+D+VD Sbjct: 178 LREKLSHLRHEKALIVKLVDIVD 200
>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2| Length = 989 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -3 Query: 388 DWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHV 221 D EI S +D D + P +V + GK LLD + + VV E+GG QH+ Sbjct: 472 DVEIDSSSDVDPEETLKSRPPVVTIMGHVDHGKTSLLDALRGSDVVRGEAGGITQHI 528
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = -3 Query: 400 SVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQH 224 + ++ E+I TD R P +V + GK LLD + V E+GG QH Sbjct: 598 AAKKTTEMIEETDLAHLIRR---PPVVTVMGHVDHGKTSLLDAIRKARVAAVEAGGITQH 654 Query: 223 VEVRAVGVSHGG 188 + V + HGG Sbjct: 655 IGAYQVEIDHGG 666
>FTSK_SHEON (Q8EER3) DNA translocase ftsK| Length = 911 Score = 29.6 bits (65), Expect = 8.7 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%) Frame = -3 Query: 559 HRGIVCDHHVFRIVQHWLHAGEPDPFYDPLN-----DYVILP--TIYEIEKH-------- 425 H + DH V R+V W G+P + LN + V+LP T E++ Sbjct: 794 HGAFIDDHEVHRVVADWCARGKPQYIDEILNGVSEGEQVLLPGETAESDEEYDPLYDEAV 853 Query: 424 ----HEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDG 284 +RG ++SV+ ++I + A R E M G +SA +G +G Sbjct: 854 AFVTETRRGSISSVQRKFKI----GYNRAARIIEQMEMQGVVSA--QGHNG 898
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Frame = +3 Query: 525 RNTWWSHTIPRWSAATPILATASR--PSAFADSAGTDPSPSTQM 650 R WW H IP W A T SR P+A + T+ T + Sbjct: 420 RQIWWGHRIPAWFCAACNEVTVSREDPTACSHCGATELRQETDV 463
>MOAC_RALSO (Q8Y1X7) Molybdenum cofactor biosynthesis protein C| Length = 158 Score = 29.6 bits (65), Expect = 8.7 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Frame = -3 Query: 457 ILPTIYEIEKHHE-KRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGL 281 +LPT + + + K+GDV + I+ G AKR ++L + L+ ++ D Sbjct: 36 MLPTTFALVRDGTAKKGDVLGIAR----IAAIQG--AKRTSDLIPLCHPLALTKVAVDFE 89 Query: 280 LDEAQATV--VVHPESGGRQHVEVRAV 206 LDEA TV V E+ G+ VE+ A+ Sbjct: 90 LDEADRTVRCTVRAETHGQTGVEMEAL 116
>IF2_XYLFA (Q9PGR3) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -3 Query: 379 IISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVRAVG 203 +++HT+ + P P +V + GK LLD + T + E+GG QH +G Sbjct: 378 LLAHTEEVHGE-PVPRPPVVTIMGHVDHGKTSLLDYIRRTKIAVGEAGGITQH-----IG 431 Query: 202 VSHGG*LRGLLQYLSS*GDCTY 137 H RG++ +L + G + Sbjct: 432 AYHVETPRGVISFLDTPGHAAF 453
>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)| Length = 881 Score = 29.6 bits (65), Expect = 8.7 Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 1/149 (0%) Frame = +3 Query: 201 TPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVWEMI 380 T + ++S+ G+TTTV+ A+SS SL S + A T + Sbjct: 181 TVSTISSSIMPAVAQGYTTTVSSAASS-SSLKSTTINPAKTAT----------------L 223 Query: 381 SQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTIPRW 560 + SS T +TS S VG T S A S + + S T Sbjct: 224 TASSSTVITSSTES--------VGSSTVSSASSSSVTTSYATSSSTVVSSDATSSTTTTS 275 Query: 561 SAATPILATASRP-SAFADSAGTDPSPST 644 S AT T+S P S+ A ++ +DP+ S+ Sbjct: 276 SVATSSSTTSSDPTSSTAAASSSDPASSS 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,092,677 Number of Sequences: 219361 Number of extensions: 2085002 Number of successful extensions: 7289 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 6903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7276 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
