ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35n22 |
|---|---|
| Clone Library Name | barley_pub |
>RS29_RAT (P62275) 40S ribosomal protein S29| Length = 55 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGFIK+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 54
>RS29_PIG (Q6QAP6) 40S ribosomal protein S29| Length = 55 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGFIK+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 54
>RS29_MOUSE (P62274) 40S ribosomal protein S29| Length = 55 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGFIK+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 54
>RS29_HUMAN (P62273) 40S ribosomal protein S29| Length = 55 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGFIK+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 54
>RS29_BOVIN (P62276) 40S ribosomal protein S29| Length = 55 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/34 (79%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGFIK+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 54
>RS29_ICTPU (Q90YP2) 40S ribosomal protein S29| Length = 55 Score = 60.8 bits (146), Expect = 3e-09 Identities = 26/34 (76%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGF+K+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKL 54
>RS29_HIPCM (Q6UZG0) 40S ribosomal protein S29| Length = 55 Score = 60.8 bits (146), Expect = 3e-09 Identities = 26/34 (76%), Positives = 28/34 (82%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 RVC N HGLIRKYGL CRQCFR AKDIGF+K+ Sbjct: 21 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVKL 54
>RS29_GRIJA (Q7XYB0) 40S ribosomal protein S29| Length = 56 Score = 58.9 bits (141), Expect = 1e-08 Identities = 24/33 (72%), Positives = 27/33 (81%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 ++CGN HGLIRKY + CRQCFR AKDIGFIK Sbjct: 22 KICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54
>RS29_CULQU (Q9NB51) 40S ribosomal protein S29| Length = 56 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/34 (70%), Positives = 27/34 (79%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 R C N+HG+IRKYGL CRQCFR AKDIGF K+ Sbjct: 22 RACSNNHGMIRKYGLNICRQCFREYAKDIGFRKL 55
>RS29_DROME (Q9VH69) 40S ribosomal protein S29| Length = 56 Score = 55.1 bits (131), Expect = 2e-07 Identities = 24/34 (70%), Positives = 25/34 (73%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 R C N HGLIRKYGL CRQCFR A DIGF K+ Sbjct: 22 RACSNRHGLIRKYGLNICRQCFREYANDIGFKKL 55
>RS29_SPOFR (Q8WQI3) 40S ribosomal protein S29| Length = 56 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/34 (70%), Positives = 25/34 (73%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 R C N HGLIRKYGL CRQCFR A DIGF K+ Sbjct: 22 RACSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 55
>RS29_NEUCR (Q9C2P2) 40S ribosomal protein S29| Length = 56 Score = 53.1 bits (126), Expect = 6e-07 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 RVC +S GLIRKYGL CRQCFR A DIGF K Sbjct: 22 RVCTHSAGLIRKYGLNICRQCFREKANDIGFTK 54
>RS29A_YEAST (P41057) 40S ribosomal protein S29-A (S36) (YS29)| Length = 55 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/33 (69%), Positives = 24/33 (72%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 RVC + GLIRKYGL CRQCFR A DIGF K Sbjct: 21 RVCSSHTGLIRKYGLNICRQCFREKANDIGFNK 53
>RS29B_YEAST (P41058) 40S ribosomal protein S29-B (S36) (YS29)| Length = 55 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/33 (63%), Positives = 23/33 (69%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 RVC + GL+RKY L CRQCFR A DIGF K Sbjct: 21 RVCSSHTGLVRKYDLNICRQCFREKANDIGFHK 53
>RS14_THEVO (Q97BW2) 30S ribosomal protein S14P| Length = 53 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG G++RKYGL CRQCFR A+ +GF K Sbjct: 21 CGRKRGIVRKYGLHLCRQCFRETARQLGFEK 51
>RS14_THEAC (Q9HIS1) 30S ribosomal protein S14P| Length = 53 Score = 46.2 bits (108), Expect = 7e-05 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG G++R+YGL CRQCFR A+ +GF K Sbjct: 21 CGRKRGIVRRYGLHLCRQCFRETARQLGFEK 51
>RS14_ARCFU (O28368) 30S ribosomal protein S14P| Length = 51 Score = 46.2 bits (108), Expect = 7e-05 Identities = 20/35 (57%), Positives = 23/35 (65%) Frame = -2 Query: 528 DSRVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 + R CG GLIR YGL CRQCFR A ++GF K Sbjct: 15 ECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKK 49
>RS14_METTH (O26125) 30S ribosomal protein S14P| Length = 50 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG+ L+R+YGLM CRQCFR A IGF K Sbjct: 18 CGDHSALVRRYGLMLCRQCFRELAPKIGFKK 48
>RS14_SULTO (Q975J4) 30S ribosomal protein S14P| Length = 57 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 R CG+ +I+KYGL CRQCFR A ++GF K Sbjct: 23 RRCGSRDSVIQKYGLYLCRQCFREVAYEMGFKK 55
>RS14_HALSA (Q9HPC0) 30S ribosomal protein S14P| Length = 52 Score = 42.0 bits (97), Expect = 0.001 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 528 DSRVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 + R CG GL+ KY + CRQCFR A+ +GF K Sbjct: 16 ECRRCGREQGLVGKYDIWLCRQCFREIARSMGFKK 50
>RS14_PYRAE (Q8ZVW1) 30S ribosomal protein S14P| Length = 54 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/33 (51%), Positives = 21/33 (63%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKVH 418 CG +IRKYGL CR+CFR A +GF K + Sbjct: 22 CGTREAVIRKYGLYLCRRCFREVAPQLGFKKYY 54
>RS14_SULSO (Q97ZQ5) 30S ribosomal protein S14P| Length = 57 Score = 41.2 bits (95), Expect = 0.002 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG+ +I+KYG+ CRQCFR A ++GF K Sbjct: 25 CGSKDSVIQKYGIYLCRQCFREVAYELGFRK 55
>RS14_METJA (P54110) 30S ribosomal protein S14P| Length = 53 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -2 Query: 516 CGN-SHGLIRKYGLMCCRQCFRSNAKDIGFIKV 421 CG+ GLIRKYGL CRQCFR A +GF K+ Sbjct: 20 CGHVGPGLIRKYGLNLCRQCFREIAHKLGFKKL 52
>RS29_SCHPO (O74329) 40S ribosomal protein S29| Length = 55 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/37 (59%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -2 Query: 525 SRVC---GNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 SR C G GLIRKYGL RQ FR A DIGF+K Sbjct: 17 SRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 53
>RS14_AERPE (P58731) 30S ribosomal protein S14P| Length = 54 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG +I+KYGL CRQCFR A +GF K Sbjct: 22 CGTRDAVIQKYGLYLCRQCFREIAPTLGFRK 52
>RS14_SULAC (O05635) 30S ribosomal protein S14P| Length = 54 Score = 40.0 bits (92), Expect = 0.005 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG+ +I+KYGL CRQCFR A +GF K Sbjct: 22 CGSRDSVIQKYGLYLCRQCFREVAYPMGFRK 52
>RS14_METVA (P14041) 30S ribosomal protein S14P| Length = 53 Score = 39.3 bits (90), Expect = 0.009 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -2 Query: 516 CGNSH-GLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG G+IRKYGL CRQCFR A +GF K Sbjct: 20 CGRKGPGIIRKYGLDLCRQCFRELAPKLGFKK 51
>RS14_HALMA (P26816) 30S ribosomal protein S14P (HmaS14)| Length = 61 Score = 39.3 bits (90), Expect = 0.009 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG GL+ KY + CRQCFR ++ +GF K Sbjct: 29 CGREQGLVGKYDIWLCRQCFREISRGMGFRK 59
>RS14_PYRHO (P62013) 30S ribosomal protein S14P| Length = 56 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG +IR +GLM CR CFR A +GF K Sbjct: 24 CGQYGPIIRIHGLMLCRHCFREVAPKLGFRK 54
>RS14_PYRAB (P62012) 30S ribosomal protein S14P| Length = 56 Score = 36.2 bits (82), Expect = 0.073 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGFIK 424 CG +IR +GLM CR CFR A +GF K Sbjct: 24 CGQYGPIIRIHGLMLCRHCFREVAPKLGFRK 54
>RS29_ENCCU (Q8SS73) 40S ribosomal protein S29| Length = 55 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -2 Query: 516 CGNSHGLIRKYGLMCCRQCFRSNAKDIGF 430 C G+IRK LM CR+CFR A DIGF Sbjct: 25 CYTFRGIIRK--LMMCRRCFREYAGDIGF 51
>RS14_CLOAB (Q97EJ1) 30S ribosomal protein S14| Length = 61 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNA 445 ++CG H +++KYG+ CR CFR A Sbjct: 25 KICGRPHSVLKKYGI--CRICFRELA 48
>RS14_CLOPE (Q8XHT6) 30S ribosomal protein S14| Length = 61 Score = 30.8 bits (68), Expect = 3.1 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNA 445 R+CG H +++K+G+ CR CFR A Sbjct: 25 RLCGRPHSVLKKFGI--CRICFRELA 48
>RS14_HELPJ (Q9ZJS5) 30S ribosomal protein S14| Length = 61 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 522 RVCGNSHGLIRKYGLMCCRQCFRSNAKD 439 R+CG H + R +GL CR C R A + Sbjct: 25 RICGRPHSVYRDFGL--CRVCLRKMASE 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,915,208 Number of Sequences: 219361 Number of extensions: 1610239 Number of successful extensions: 3985 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3817 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3985 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
