>RK34_SPIOL (P82244) 50S ribosomal protein L34, chloroplast precursor|
          Length = 152

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -3

Query: 354 GIEFSYNR-LTTRRPRGLQIRAGKAALCLTKRSRSRKSLARVHGFXXXXXXXXXXXXXXX 178
           G++ + N  ++T R R   +RAGKAALCLTKRSRSRKSLAR HGF               
Sbjct: 70  GLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKR 129

Query: 177 XXXXXXKILCTKSNSPTGTK 118
                 KILCTK+N  +G +
Sbjct: 130 RRAKGRKILCTKTNPSSGKR 149

>GYRB_NEIGO (P22118) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 781

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 69  KLTAGIHNASHCAVINTLSQWVSLTLCR 152
           K++ G+H     +V+N LS WV+LT+ R
Sbjct: 114 KISGGLHGVG-VSVVNALSDWVTLTIYR 140

>XISA_ANASP (P08862) Excisase A (NifD element site-specific recombinase)|
          Length = 472

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 229 WFPKADADYCWKKGSEA*T*QRKEDPLHKVKLTHWD 122
           W  K + D  WK   E  T +R+  PLHK  +  +D
Sbjct: 300 WLSKENIDLTWKVDKECKTGERQALPLHKEWIDEFD 335

>NFL_RAT (P19527) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L)
          Length = 541

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 356 KDEPPNE-EAEVKASDAETAARERXXXXXXXXXXXDE*APEKRGGGG 493
           KDEPP+E EAE +  + E    E             E A E+ GG G
Sbjct: 467 KDEPPSEGEAEEEEKEKEEGEEEEGAEEEEAAKDESEDAKEEEGGEG 513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,469,071
Number of Sequences: 219361
Number of extensions: 1067354
Number of successful extensions: 2868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2867
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)