ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35m24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234439.1|HVU234439 Hordeum vulgare partial mRNA; clone cMWG0725 Length = 383 Score = 367 bits (185), Expect = 2e-98 Identities = 192/193 (99%), Gaps = 1/193 (0%) Strand = Plus / Minus Query: 1 gcatagatgggtgtgtgaaaattaactttacatacagagagagtataatactacgcctgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 gcatagatgggtgtgtgaaaattaactttacatacagagagagtataatactacgcctgc 134 Query: 61 tctgctgtgctctgccgtgtgcccagcagcagacccaagcagggcacactgtacgtgttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 tctgctgtgctctgccgtgtgcccagcagcagacccaagcagggcacactgtacgtgttt 74 Query: 121 gttcttctcctcgcga-cccccttgcttttgtgcgtggaatttgctcagattctggaggg 179 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 gttcttctcctcgcgaccccccttgcttttgtgcgtggaatttgctcagattctggaggg 14 Query: 180 gatgaggggcgtg 192 ||||||||||||| Sbjct: 13 gatgaggggcgtg 1
>ref|XM_483211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1507 Score = 168 bits (85), Expect = 8e-39 Identities = 167/195 (85%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 1293 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 1235 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccga 284 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || | | Sbjct: 1234 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactca 1175 Query: 285 ggcaacccagaagttgcagntcgttgaggtggccgangtggccgatcctgaanaccttgc 344 || ||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct: 1174 gggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgc 1115 Query: 345 nggctancttgttga 359 ||| | |||||||| Sbjct: 1114 cggcgaccttgttga 1100
>ref|XM_507283.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1345_D02.38 mRNA Length = 1567 Score = 168 bits (85), Expect = 8e-39 Identities = 167/195 (85%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 1285 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 1227 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccga 284 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || | | Sbjct: 1226 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactca 1167 Query: 285 ggcaacccagaagttgcagntcgttgaggtggccgangtggccgatcctgaanaccttgc 344 || ||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct: 1166 gggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgc 1107 Query: 345 nggctancttgttga 359 ||| | |||||||| Sbjct: 1106 cggcgaccttgttga 1092
>dbj|AK099206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F20, full insert sequence Length = 1321 Score = 168 bits (85), Expect = 8e-39 Identities = 167/195 (85%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 1059 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 1001 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccga 284 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || | | Sbjct: 1000 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactca 941 Query: 285 ggcaacccagaagttgcagntcgttgaggtggccgangtggccgatcctgaanaccttgc 344 || ||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct: 940 gggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgc 881 Query: 345 nggctancttgttga 359 ||| | |||||||| Sbjct: 880 cggcgaccttgttga 866
>dbj|AK065126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P06, full insert sequence Length = 1507 Score = 168 bits (85), Expect = 8e-39 Identities = 167/195 (85%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 1293 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 1235 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccga 284 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || | | Sbjct: 1234 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactca 1175 Query: 285 ggcaacccagaagttgcagntcgttgaggtggccgangtggccgatcctgaanaccttgc 344 || ||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct: 1174 gggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgc 1115 Query: 345 nggctancttgttga 359 ||| | |||||||| Sbjct: 1114 cggcgaccttgttga 1100
>dbj|AK064774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A23, full insert sequence Length = 1567 Score = 168 bits (85), Expect = 8e-39 Identities = 167/195 (85%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 1285 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 1227 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccga 284 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| || | | Sbjct: 1226 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactca 1167 Query: 285 ggcaacccagaagttgcagntcgttgaggtggccgangtggccgatcctgaanaccttgc 344 || ||||| | |||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct: 1166 gggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgc 1107 Query: 345 nggctancttgttga 359 ||| | |||||||| Sbjct: 1106 cggcgaccttgttga 1092
>gb|AY107617.1| Zea mays PCO084394 mRNA sequence Length = 1016 Score = 133 bits (67), Expect = 4e-28 Identities = 121/140 (86%) Strand = Plus / Minus Query: 203 aggtacgccgccgcggccgccacgccgctgccaagcttcaccgggtacccgatgtgcttg 262 ||||||||||||||||| ||||||||||| || || ||||| |||||||| | | |||| Sbjct: 728 aggtacgccgccgcggctgccacgccgctacctagtttcactgggtaccccacatccttg 669 Query: 263 agcaccatctccaccccgccgaggcaacccagaagttgcagntcgttgaggtggccgang 322 |||||||||||||| |||| || || |||||||||||||| |||||||||| ||||| Sbjct: 668 agcaccatctccacaccgctcagacatcccagaagttgcagctcgttgaggttgccgaga 609 Query: 323 tggccgatcctgaanacctt 342 |||||||||||||| ||||| Sbjct: 608 tggccgatcctgaagacctt 589 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 13 gtgtgaaaattaactttacatacagagagagta 45 |||||||| |||||||||||| | ||||||||| Sbjct: 879 gtgtgaaatttaactttacattctgagagagta 847
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 4e-22 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 24821183 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 24821241 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccac 276 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 24821242 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 24821293 Score = 77.8 bits (39), Expect = 2e-11 Identities = 50/55 (90%) Strand = Plus / Plus Query: 305 tcgttgaggtggccgangtggccgatcctgaanaccttgcnggctancttgttga 359 |||||||||||||||| ||||||||||||||| ||||||| ||| | |||||||| Sbjct: 24821414 tcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttga 24821468 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 4755695 acgccgccgccgccgccacgccgc 4755718
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 113 bits (57), Expect = 4e-22 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 121984 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 122042 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccac 276 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 122043 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 122094 Score = 77.8 bits (39), Expect = 2e-11 Identities = 50/55 (90%) Strand = Plus / Plus Query: 305 tcgttgaggtggccgangtggccgatcctgaanaccttgcnggctancttgttga 359 |||||||||||||||| ||||||||||||||| ||||||| ||| | |||||||| Sbjct: 122215 tcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttga 122269
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 113 bits (57), Expect = 4e-22 Identities = 99/112 (88%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 165 tcagattctggaggggatgaggggcgtggaatgncgagaggtacgccgccgcggccgcca 224 |||||| ||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||| Sbjct: 25629 tcagatcctggacgggatgagcggcgtcgaat-tcgacaggtacgccgccgccgccgcca 25687 Query: 225 cgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccac 276 ||||| ||| |||||||||||||| ||||||| |||||||||||||||||| Sbjct: 25688 cgccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 25739 Score = 77.8 bits (39), Expect = 2e-11 Identities = 50/55 (90%) Strand = Plus / Plus Query: 305 tcgttgaggtggccgangtggccgatcctgaanaccttgcnggctancttgttga 359 |||||||||||||||| ||||||||||||||| ||||||| ||| | |||||||| Sbjct: 25860 tcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttga 25914
>gb|AY053359.1| Spirodela polyrhiza serine-glyoxylate aminotransferase (SGAT) mRNA, partial cds Length = 320 Score = 85.7 bits (43), Expect = 9e-14 Identities = 123/148 (83%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncga-gaggtacgccgccgcggccgcc 223 |||||| ||||||||||||||||| || | || || ||| ||||||||||| |||||| Sbjct: 183 tcagatcctggaggggatgaggggggt--attgttgaggagatacgccgccgctgccgcc 126 Query: 224 acgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccg 283 || |||||||| ||||||||||||||||| | || | | | |||||||||||| |||| Sbjct: 125 accccgctgcctagcttcaccgggtaccccacgtcccttaacaccatctccacgccgctc 66 Query: 284 aggcaacccagaagttgcagntcgttga 311 ||||| |||| |||||||| ||||||| Sbjct: 65 aggcaccccaacagttgcagctcgttga 38
>gb|DQ177463.1| Spirodela polyrrhiza serine-glyoxylate aminotransferase mRNA, complete cds Length = 1378 Score = 77.8 bits (39), Expect = 2e-11 Identities = 122/148 (82%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 165 tcagattctggaggggatgaggggcgtggaatgncga-gaggtacgccgccgcggccgcc 223 |||||| ||||||||||||||||| || | || || ||| ||||||||||| |||||| Sbjct: 1241 tcagatcctggaggggatgaggggggt--attgttgaggagatacgccgccgctgccgcc 1184 Query: 224 acgccgctgccaagcttcaccgggtacccgatgtgcttgagcaccatctccaccccgccg 283 || |||||||| |||||| |||||||||| | || | | | |||||||||||| |||| Sbjct: 1183 accccgctgcctagcttcgccgggtaccccacgtcccttaacaccatctccacgccgctc 1124 Query: 284 aggcaacccagaagttgcagntcgttga 311 ||||| |||| |||||||| ||||||| Sbjct: 1123 aggcaccccaacagttgcagctcgttga 1096
>gb|AE007302.1| Sinorhizobium meliloti 1021 plasmid pSymA section 108 of 121 of the complete plasmid sequence Length = 10507 Score = 44.1 bits (22), Expect = 0.31 Identities = 32/36 (88%) Strand = Plus / Plus Query: 305 tcgttgaggtggccgangtggccgatcctgaanacc 340 ||||| |||| ||||| ||||||||||||||| ||| Sbjct: 4607 tcgttcaggtcgccgaggtggccgatcctgaaaacc 4642
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgcc 228 |||||||||||||||||||||| Sbjct: 4363069 acgccgccgcggccgccacgcc 4363090
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgcc 228 |||||||||||||||||||||| Sbjct: 4295847 acgccgccgcggccgccacgcc 4295868
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ccgccgcggccgccacgccgc 230 ||||||||||||||||||||| Sbjct: 248577 ccgccgcggccgccacgccgc 248557
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgc 227 ||||||||||||||||||||| Sbjct: 34756737 acgccgccgcggccgccacgc 34756757
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 acgccgccgcggccgccacgc 227 ||||||||||||||||||||| Sbjct: 105913 acgccgccgcggccgccacgc 105893
>ref|XM_842631.1| Leishmania major strain Friedlin flagellar radial spoke protein (LMJ_0701) partial mRNA Length = 1773 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ccgccgcggccgccacgccgc 230 ||||||||||||||||||||| Sbjct: 277 ccgccgcggccgccacgccgc 297
>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13 Contains the C1QA gene for complement component 1( q subcomponent, alpha polypeptide), the C1QG gene for complement component 1 (q subcomponent, gamma polypeptide), the C1QB gene for complement component 1 (q subcomponent, beta polypeptide), the 5' end of the EPHB2 gene for EphB2 and a CpG island, complete sequence Length = 87320 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 gcctgctctgctgtgctctgc 75 ||||||||||||||||||||| Sbjct: 53126 gcctgctctgctgtgctctgc 53106
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgc 227 ||||||||||||||||||||| Sbjct: 34846809 acgccgccgcggccgccacgc 34846829
>dbj|AP001547.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802F5, complete sequence Length = 144493 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gcctgctctgctgtgctctgc 75 ||||||||||||||||||||| Sbjct: 115464 gcctgctctgctgtgctctgc 115484
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 acgccgccgcggccgccacgc 227 ||||||||||||||||||||| Sbjct: 3418066 acgccgccgcggccgccacgc 3418046
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 175326 acgccgccgccgccgccacgccgc 175303
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgc 227 |||||||||||||||||||| Sbjct: 3198014 cgccgccgcggccgccacgc 3198033
>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence Length = 175566 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gcctgctctgctgtgctctg 74 |||||||||||||||||||| Sbjct: 7163 gcctgctctgctgtgctctg 7144
>ref|XM_865675.1| PREDICTED: Bos taurus similar to Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4), transcript variant 1 (LOC613955), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gcggccgccacgccgctgcc 234 |||||||||||||||||||| Sbjct: 110 gcggccgccacgccgctgcc 129
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cgccgccgcggccgccacgc 227 |||||||||||||||||||| Sbjct: 783136 cgccgccgcggccgccacgc 783117
>gb|AC148021.2| Mus musculus BAC clone RP23-9A7 from chromosome 19, complete sequence Length = 213178 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gcctgctctgctgtgctctg 74 |||||||||||||||||||| Sbjct: 6242 gcctgctctgctgtgctctg 6261
>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence Length = 171912 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 99 gcagggcacactgtacgtgtttgttctt 126 ||||| ||||||||| |||||||||||| Sbjct: 106185 gcaggacacactgtaggtgtttgttctt 106158
>gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome 19, complete sequence Length = 194681 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gcctgctctgctgtgctctg 74 |||||||||||||||||||| Sbjct: 74034 gcctgctctgctgtgctctg 74015
>gb|AC124517.4| Mus musculus BAC clone RP23-387K15 from chromosome 13, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cctgctctgctgtgctctgc 75 |||||||||||||||||||| Sbjct: 75886 cctgctctgctgtgctctgc 75905
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 tctggaggggatgaggggcgtgga 194 ||||||||||||| |||||||||| Sbjct: 114645 tctggaggggatggggggcgtgga 114622
>gb|AC160107.2| Mus musculus BAC clone RP24-252N17 from chromosome 13, complete sequence Length = 178725 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cctgctctgctgtgctctgc 75 |||||||||||||||||||| Sbjct: 6551 cctgctctgctgtgctctgc 6532
>emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in linkage group 17, complete sequence Length = 159225 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tgtgaaaattaactttacat 33 |||||||||||||||||||| Sbjct: 101036 tgtgaaaattaactttacat 101055
>gb|BT009343.1| Triticum aestivum clone wlm4.pk0021.h10:fis, full insert mRNA sequence Length = 1639 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacg 226 |||||||||||||||||||| Sbjct: 458 acgccgccgcggccgccacg 477
>emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 14/17 Length = 348498 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaaattaactttacatacag 37 |||||||||||||||||||| Sbjct: 280903 aaaattaactttacatacag 280922
>emb|AL355532.10| Human DNA sequence from clone RP11-487F5 on chromosome 6 Contains the 3' part of the GRIK2 (glutamate receptor, ionotropic, kainate 2) gene, ESTs, STSs and GSSs, complete sequence Length = 181302 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tgcccagcagcagacccaagcagg 103 ||||||| |||||||||||||||| Sbjct: 29784 tgcccagaagcagacccaagcagg 29807
>emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in linkage group 17, complete sequence Length = 197949 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tgtgaaaattaactttacat 33 |||||||||||||||||||| Sbjct: 30137 tgtgaaaattaactttacat 30156
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgccgct 231 ||||||||| |||||||||||||| Sbjct: 19481570 cgccgccgccgccgccacgccgct 19481593
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 8094707 acgccgccgccgccgccacgccgc 8094684
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 10827636 acgccgccgccgccgccacgccgc 10827659
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 9795031 acgccgccgccgccgccacgccgc 9795054
>gb|AC067738.17| Homo sapiens 3 BAC RP11-381H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82883 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 agacccaagcagggcacactgtac 114 |||||||||||| ||||||||||| Sbjct: 20379 agacccaagcagtgcacactgtac 20356
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 85273 acgccgccgccgccgccacgccgc 85296
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ccgcggccgccacgccgctg 232 |||||||||||||||||||| Sbjct: 610583 ccgcggccgccacgccgctg 610602
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 38395 acgccgccgccgccgccacgccgc 38418
>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21 Length = 134543 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 4011 acgccgccgccgccgccacgccgc 4034
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 113711 acgccgccgccgccgccacgccgc 113734
>dbj|AK099684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072A20, full insert sequence Length = 1406 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgccgct 231 ||||||||| |||||||||||||| Sbjct: 73 cgccgccgccgccgccacgccgct 96
>dbj|AP006198.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-410D4, complete sequence Length = 139671 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tgcccagcagcagacccaagcagg 103 ||||||| |||||||||||||||| Sbjct: 66739 tgcccagaagcagacccaagcagg 66762
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 acgccgccgcggccgccacgccgc 230 |||||||||| ||||||||||||| Sbjct: 8164537 acgccgccgccgccgccacgccgc 8164514
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgccgct 231 ||||||||| |||||||||||||| Sbjct: 19407783 cgccgccgccgccgccacgccgct 19407806
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgccgct 231 ||||||||| |||||||||||||| Sbjct: 159264 cgccgccgccgccgccacgccgct 159287
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cgccgccgcggccgccacgccgct 231 ||||||||| |||||||||||||| Sbjct: 13751 cgccgccgccgccgccacgccgct 13774
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ccgccgcggccgccacgccg 229 |||||||||||||||||||| Sbjct: 2677509 ccgccgcggccgccacgccg 2677528
>dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 3/4 Length = 300000 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tgcccagcagcagacccaagcagg 103 ||||||| |||||||||||||||| Sbjct: 152035 tgcccagaagcagacccaagcagg 152058
>dbj|AB042030.1| Homo sapiens genomic DNA, chromosome 6q21, BAC clone:610J6, complete sequence Length = 111927 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tgcccagcagcagacccaagcagg 103 ||||||| |||||||||||||||| Sbjct: 87059 tgcccagaagcagacccaagcagg 87082 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,677,472 Number of Sequences: 3902068 Number of extensions: 2677472 Number of successful extensions: 69908 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68794 Number of HSP's gapped (non-prelim): 1106 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
