ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC... 28 7.1
2GIS4_YEAST (Q04233) Protein GIS4 28 9.3

>PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC 1.10.3.1)|
           (PPO) (Catechol oxidase)
          Length = 593

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 118 DSIYIYV*FP-F*FSPHSRYLCFPFHFYYVYSLSRSCQKV 2
           D  Y  V FP      H+ +L FPFH YY+Y   +   K+
Sbjct: 180 DGAYDQVGFPELELQIHNSWLFFPFHRYYLYFFEKILGKL 219



to top

>GIS4_YEAST (Q04233) Protein GIS4|
          Length = 774

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 22  TMNRHNKNEKGNKDSGSEEKIRK 90
           T N H  N KGN +S S+ +++K
Sbjct: 682 TKNSHKPNSKGNNESNSKNELKK 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,505,487
Number of Sequences: 219361
Number of extensions: 135961
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 80,573,946
effective HSP length: 15
effective length of database: 77,283,531
effective search space used: 1854804744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top