ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 240 1e-60
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 238 5e-60
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 234 8e-59
4gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 135 5e-29
5gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 135 5e-29
6gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 135 5e-29
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 121 8e-25
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 111 8e-22
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 111 8e-22
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 111 8e-22
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 111 8e-22
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 111 8e-22
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 8e-22
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 111 8e-22
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 111 8e-22
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 111 8e-22
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 100 3e-18
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 5e-17
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 82 7e-13
23gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 64 2e-07
24gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 64 2e-07
25gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 64 2e-07
26gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 64 2e-07
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
28dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 56 4e-05
29ref|XM_727134.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 0.61
30ref|XM_740569.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 0.61
31gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, compl... 40 2.4
32gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, comple... 40 2.4
33ref|XM_723581.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 2.4
34ref|XM_670557.1| Plasmodium berghei strain ANKA hypothetical pro... 40 2.4
35emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 2.4
36gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, co... 38 9.5
37gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 9.5
38emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 9.5
39gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 9.5
40emb|AL356253.7| Human DNA sequence from clone RP11-318C5 on chro... 38 9.5
41gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 9.5
42gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, comple... 38 9.5
43dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
44dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
45emb|AL808131.9| Mouse DNA sequence from clone RP23-367H7 on chro... 38 9.5 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  240 bits (121), Expect = 1e-60
 Identities = 175/184 (95%), Gaps = 8/184 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaatcgcttggatgcgatgcggact-aggt-ggtaaa-cat-agatattaaaagtggca 56
            |||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||
Sbjct: 7704 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 7645

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 7585

                                                                        
Query: 116  ggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgtgcctccttt 175
            ||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||
Sbjct: 7584 ggcattttggtcggtgcaaccttccggc--acgggcaaagtaccttgctgtg-ctccttt 7528

                
Query: 176  acct 179
            ||||
Sbjct: 7527 acct 7524
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  238 bits (120), Expect = 5e-60
 Identities = 174/183 (95%), Gaps = 8/183 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaatcgcttggatgcgatgcggact-aggt-ggtaaa-cat-agatattaaaagtggca 56
            |||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||
Sbjct: 1344 gcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggca 1285

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 1225

                                                                        
Query: 116  ggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgtgcctccttt 175
            ||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||
Sbjct: 1224 ggcattttggtcggtgcaaccttccggc--acgggcaaagtaccttgctgtg-ctccttt 1168

               
Query: 176  acc 178
            |||
Sbjct: 1167 acc 1165
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  234 bits (118), Expect = 8e-59
 Identities = 184/198 (92%), Gaps = 9/198 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaatcgcttggatgcgatgcggactaggtg---gtaaa-cat-agatattaaaagtggc 55
            ||||||||||||||||||||||||||  |||   ||||| ||| ||||||||||||||||
Sbjct: 1653 gcaatcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggc 1594

                                                                        
Query: 56   atgcttaaaaggtgtaa-ggcagctgccgt-cgtcgctccttgccgttgggtcgtagttc 113
            ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1593 atgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttc 1534

                                                                        
Query: 114  ttggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgtgcctcct 173
            ||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 1533 ttggcattttggtcggtgcaaccttccgg-catcgggcaaagtaccttgctgtg-ctcct 1476

                              
Query: 174  ttacctnctnctatgcag 191
            |||||| || ||||||||
Sbjct: 1475 ttacctcctcctatgcag 1458
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  135 bits (68), Expect = 5e-29
 Identities = 128/145 (88%), Gaps = 4/145 (2%)
 Strand = Plus / Minus

                                                                        
Query: 48   aaagtggcatgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtc 106
            ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 107  gtagttcttggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgt 166
            | ||||||||||||   ||||||| ||||||||||||   | |||||||| ||||| |||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggc--acaggcaaagtgccttgttgt 1410

                                     
Query: 167  gcctcctttacctnctnctatgcag 191
            | ||||||||||| || ||||||||
Sbjct: 1409 g-ctcctttacctcctcctatgcag 1386
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  135 bits (68), Expect = 5e-29
 Identities = 125/141 (88%), Gaps = 4/141 (2%)
 Strand = Plus / Minus

                                                                       
Query: 52  tggcatgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtag 110
           ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||
Sbjct: 664 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 605

                                                                       
Query: 111 ttcttggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgtgcct 170
           ||||||||| | ||||||||||| ||| ||||    | ||||||||||||||||||||| 
Sbjct: 604 ttcttggcagtctggtcggtgcatcctgccgg--tacaggcaaagtaccttgctgtgcc- 548

                                
Query: 171 cctttacctnctnctatgcag 191
           ||||||||| || ||||||||
Sbjct: 547 cctttacctcctcctatgcag 527



 Score = 46.1 bits (23), Expect = 0.039
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 1   gcaatcgcttggatgcgatgcgg 23
           |||||||||||||||||||||||
Sbjct: 724 gcaatcgcttggatgcgatgcgg 702
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  135 bits (68), Expect = 5e-29
 Identities = 125/141 (88%), Gaps = 4/141 (2%)
 Strand = Plus / Minus

                                                                        
Query: 52   tggcatgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtag 110
            ||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||
Sbjct: 1514 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 1455

                                                                        
Query: 111  ttcttggcattttggtcggtgcaaccttccggccaccgggcaaagtaccttgctgtgcct 170
            ||||||||| | ||||||||||| ||| ||||    | ||||||||||||||||||||| 
Sbjct: 1454 ttcttggcagtctggtcggtgcatcctgccgg--tacaggcaaagtaccttgctgtgcc- 1398

                                 
Query: 171  cctttacctnctnctatgcag 191
            ||||||||| || ||||||||
Sbjct: 1397 cctttacctcctcctatgcag 1377



 Score = 46.1 bits (23), Expect = 0.039
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1    gcaatcgcttggatgcgatgcgg 23
            |||||||||||||||||||||||
Sbjct: 1574 gcaatcgcttggatgcgatgcgg 1552
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  121 bits (61), Expect = 8e-25
 Identities = 89/97 (91%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                        
Query: 48   aaagtggcatgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtc 106
            ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                 
Query: 107  gtagttcttggcattttggtcggtgcaaccttccggc 143
            | ||||||||||||   ||||||| ||||||||||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggc 1393
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                          
Query: 57     tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
              |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                          
Query: 116    ggcattttggtcggtgcaaccttccggc 143
              ||||    ||||||||||||||||||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggc 107245



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 74     gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 112
              ||||||||||||||||||||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                         
Query: 57    tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
             |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                         
Query: 116   ggcattttggtcggtgcaaccttccggc 143
             ||||    ||||||||||||||||||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggc 29126



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 74    gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 112
             ||||||||||||||||||||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggc 1433
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggc 1343
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                            
Query: 57       tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
                |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                            
Query: 116      ggcattttggtcggtgcaaccttccggc 143
                ||||    ||||||||||||||||||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggc 28302388



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 74       gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 112
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggc 1427
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggc 1465
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggc 1464
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggc 1248
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                            
Query: 57       tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
                |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                            
Query: 116      ggcattttggtcggtgcaaccttccggc 143
                ||||    ||||||||||||||||||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggc 28284837



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 74       gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 112
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggc 1469
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  111 bits (56), Expect = 8e-22
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggc 1378
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 75/82 (91%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 63  aaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 121
           |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                 
Query: 122 ttggtcggtgcaaccttccggc 143
             ||||||||||||||||||||
Sbjct: 33  agggtcggtgcaaccttccggc 12
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 80/88 (90%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                        
Query: 57   tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
            |||||||||||||||| |||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                        
Query: 116  ggcattttggtcggtgcaaccttccggc 143
            ||||    ||||||||||||||||||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggc 1476
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                            
Query: 71  aaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggca 119
           |||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 120 aaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggca 72
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 72   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 131
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1444 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1385

                    
Query: 132  caaccttc 139
            ||||||||
Sbjct: 1384 caaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 72   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 131
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1269 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1210

                    
Query: 132  caaccttc 139
            ||||||||
Sbjct: 1209 caaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 72   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 131
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1143 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1084

                    
Query: 132  caaccttc 139
            ||||||||
Sbjct: 1083 caaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 72   aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 131
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1299 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1240

                    
Query: 132  caaccttc 139
            ||||||||
Sbjct: 1239 caaccttc 1232
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 74/88 (84%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                           
Query: 57      tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
               |||||| ||||||||| ||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                           
Query: 116     ggcattttggtcggtgcaaccttccggc 143
               ||||    ||||||||||||||||||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggc 4541326



 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 75       cagctgccgtcgtcgctcc 93
                |||||||||||||||||||
Sbjct: 13186146 cagctgccgtcgtcgctcc 13186128
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 74/88 (84%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                         
Query: 57    tgcttaaaaggtgtaa-ggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 115
             |||||| ||||||||| ||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                         
Query: 116   ggcattttggtcggtgcaaccttccggc 143
             ||||    ||||||||||||||||||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggc 84700
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>ref|XM_727134.1| Plasmodium chabaudi chabaudi hypothetical protein (PC404630.00.0)
           partial mRNA
          Length = 264

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 32  gtaaacatagatattaaaagt 52
           |||||||||||||||||||||
Sbjct: 121 gtaaacatagatattaaaagt 141
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>ref|XM_740569.1| Plasmodium chabaudi chabaudi hypothetical protein (PC102998.00.0)
           partial mRNA
          Length = 585

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 32  gtaaacatagatattaaaagt 52
           |||||||||||||||||||||
Sbjct: 451 gtaaacatagatattaaaagt 471
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>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence
          Length = 185364

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    accttgctgtgcctccttta 176
              ||||||||||||||||||||
Sbjct: 117032 accttgctgtgcctccttta 117013
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>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence
          Length = 108182

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   accttgctgtgcctccttta 176
             ||||||||||||||||||||
Sbjct: 54127 accttgctgtgcctccttta 54108
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>ref|XM_723581.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01098)
            partial mRNA
          Length = 5601

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   gtaaacatagatattaaaag 51
            ||||||||||||||||||||
Sbjct: 2146 gtaaacatagatattaaaag 2165
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>ref|XM_670557.1| Plasmodium berghei strain ANKA hypothetical protein (PB103644.00.0)
            partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   gtaaacatagatattaaaag 51
            ||||||||||||||||||||
Sbjct: 1969 gtaaacatagatattaaaag 1988
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tggcatgcttaaaaggtgta 71
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, complete sequence
          Length = 141809

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 153    aagtaccttgctgtgcctc 171
              |||||||||||||||||||
Sbjct: 127319 aagtaccttgctgtgcctc 127301
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>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     tattaaaagtggcatgcttaaaa 65
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580
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>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    aaagtggcatgcttaaaag 66
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 40    agatattaaaagtggcatgctta 62
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546
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>emb|AL356253.7| Human DNA sequence from clone RP11-318C5 on chromosome 13, complete
             sequence
          Length = 200638

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    gtaaacatagatattaaaa 50
             |||||||||||||||||||
Sbjct: 78703 gtaaacatagatattaaaa 78685
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>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     tattaaaagtggcatgcttaaaa 65
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386
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>gb|AC104656.3| Homo sapiens BAC clone RP11-547J14 from 4, complete sequence
          Length = 175350

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     aacatagatattaaaagtg 53
              |||||||||||||||||||
Sbjct: 134905 aacatagatattaaaagtg 134887
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0055N01
          Length = 154783

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 75   cagctgccgtcgtcgctcc 93
            |||||||||||||||||||
Sbjct: 7580 cagctgccgtcgtcgctcc 7562
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     cagctgccgtcgtcgctcc 93
              |||||||||||||||||||
Sbjct: 108236 cagctgccgtcgtcgctcc 108218
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>emb|AL808131.9| Mouse DNA sequence from clone RP23-367H7 on chromosome X, complete
              sequence
          Length = 210322

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     taaacatagatattaaaag 51
              |||||||||||||||||||
Sbjct: 207592 taaacatagatattaaaag 207610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,142,939
Number of Sequences: 3902068
Number of extensions: 1142939
Number of successful extensions: 76282
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76082
Number of HSP's gapped (non-prelim): 156
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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