ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosom... 42 0.43
2gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complet... 40 1.7
3emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chr... 40 1.7
4emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chr... 40 1.7
5gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-27... 40 1.7
6emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-7... 40 1.7
7dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 1.7
8dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 1.7
9emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 1.7
10ref|NM_053380.1| Rattus norvegicus solute carrier family 34 (sod... 38 6.7
11gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete se... 38 6.7
12gb|BC076465.1| Danio rerio alanine-glyoxylate aminotransferase, ... 38 6.7
13gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete... 38 6.7
14gb|BC070898.1| Rattus norvegicus solute carrier family 34 (sodiu... 38 6.7
15emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in... 38 6.7
16gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, c... 38 6.7
17gb|AC113059.7| Mus musculus chromosome 10, clone RP23-255F14, co... 38 6.7
18gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, co... 38 6.7
19emb|AL929444.6| Human DNA sequence from clone RP11-359B3 on chro... 38 6.7
20emb|AL117342.12|HSDJ453I5 Human DNA sequence from clone RP3-453I... 38 6.7
21ref|NM_001002331.1| Danio rerio alanine-glyoxylate aminotransfer... 38 6.7
22ref|NM_135742.2| Drosophila melanogaster CG12292-RA (CG12292), mRNA 38 6.7
23gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, com... 38 6.7
24gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, comp... 38 6.7
25gb|AY089521.1| Drosophila melanogaster GM13388 full insert cDNA 38 6.7
26gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342... 38 6.7
27gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, compl... 38 6.7
28gb|AC093095.1| Drosophila melanogaster, chromosome 2L, region 33... 38 6.7
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
30dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
31ref|XM_579555.1| PREDICTED: Rattus norvegicus solute carrier fam... 38 6.7
32gb|AF157026.1|AF157026 Rattus norvegicus type IIb sodium-phospha... 38 6.7
33emb|AL132943.3|CEY116F11B Caenorhabditis elegans YAC Y116F11B, c... 38 6.7
34emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 38 6.7
35gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46... 38 6.7
36gb|AC005891.1|AC005891 Drosophila melanogaster, chromosome 2L, r... 38 6.7
37dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
38gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 38 6.7
39emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chrom... 38 6.7
40gb|AC159308.4| Mus musculus BAC clone RP23-187B11 from chromosom... 38 6.7

>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete
             sequence
          Length = 177652

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    atgtcattcacaggaaaaatg 115
             |||||||||||||||||||||
Sbjct: 81851 atgtcattcacaggaaaaatg 81871



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>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 6591 aggaaaaatgcagagaatct 6572



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>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 174615

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aggaaaaatgcagagaatct 125
              ||||||||||||||||||||
Sbjct: 119702 aggaaaaatgcagagaatct 119683



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>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a
            transcription elongation factor B (SIII) polypeptide 1
            (15kDa, elongin C) (TCEB1) pseudogene, complete sequence
          Length = 55284

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 8758 aggaaaaatgcagagaatct 8739



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>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map
             8p21-p11, complete sequence
          Length = 301232

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 33093 aggaaaaatgcagagaatct 33074



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>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198714

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    aaaaatgcagagaatcttcctcac 132
              ||||||||||||||||| ||||||
Sbjct: 180480 aaaaatgcagagaatctgcctcac 180503



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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 8681 aggaaaaatgcagagaatct 8662



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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 67424 aggaaaaatgcagagaatct 67405



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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 24269 aggaaaaatgcagagaatct 24288



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>ref|NM_053380.1| Rattus norvegicus solute carrier family 34 (sodium phosphate),
           member 2 (Slc34a2), mRNA
          Length = 3950

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 aaaatgcagagaatcttcc 128
           |||||||||||||||||||
Sbjct: 304 aaaatgcagagaatcttcc 286



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>gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete sequence
          Length = 148548

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    gactaagctctatgaatat 59
             |||||||||||||||||||
Sbjct: 84663 gactaagctctatgaatat 84681



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>gb|BC076465.1| Danio rerio alanine-glyoxylate aminotransferase, like, mRNA (cDNA
          clone MGC:91879 IMAGE:7038996), complete cds
          Length = 1395

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 71 actgaggtaatggttaact 89
          |||||||||||||||||||
Sbjct: 59 actgaggtaatggttaact 41



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>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence
          Length = 186444

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 123    tcttcctcacatggatgcc 141
              |||||||||||||||||||
Sbjct: 173858 tcttcctcacatggatgcc 173876



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>gb|BC070898.1| Rattus norvegicus solute carrier family 34 (sodium phosphate),
           member 2, mRNA (cDNA clone MGC:91585 IMAGE:7099656),
           complete cds
          Length = 3515

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 aaaatgcagagaatcttcc 128
           |||||||||||||||||||
Sbjct: 315 aaaatgcagagaatcttcc 297



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>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2,
             complete sequence
          Length = 244700

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 109   aaaaatgcagagaatcttc 127
             |||||||||||||||||||
Sbjct: 18577 aaaaatgcagagaatcttc 18559



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>gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, complete sequence
          Length = 219004

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ctcgactaagctctatgaa 56
             |||||||||||||||||||
Sbjct: 32730 ctcgactaagctctatgaa 32748



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>gb|AC113059.7| Mus musculus chromosome 10, clone RP23-255F14, complete sequence
          Length = 211296

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 116    cagagaatcttcctcacat 134
              |||||||||||||||||||
Sbjct: 100048 cagagaatcttcctcacat 100030



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>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence
          Length = 319367

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 116    cagagaatcttcctcacat 134
              |||||||||||||||||||
Sbjct: 191256 cagagaatcttcctcacat 191238



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>emb|AL929444.6| Human DNA sequence from clone RP11-359B3 on chromosome 10 Contains a
             ribosomal protein S27 (metallopanstimulin 1) (MPS1, MPS-1)
             (RPS27) pseudogene, complete sequence
          Length = 50865

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    cattcacaggaaaaatgca 117
             |||||||||||||||||||
Sbjct: 37053 cattcacaggaaaaatgca 37035



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>emb|AL117342.12|HSDJ453I5 Human DNA sequence from clone RP3-453I5 on chromosome 6q14.3-16.1
             Contains part of the BACH2 gene for BTB and CNC homology 1
             basic leucine zipper transcription factor 2 and a
             chromosome 11 open reading frame 17 (C11orf17) pseudogene,
             complete sequence
          Length = 97083

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    aatgtcattcacaggaaaa 112
             |||||||||||||||||||
Sbjct: 63791 aatgtcattcacaggaaaa 63809



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>ref|NM_001002331.1| Danio rerio alanine-glyoxylate aminotransferase, like (agxtl),
          mRNA
          Length = 1395

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 71 actgaggtaatggttaact 89
          |||||||||||||||||||
Sbjct: 59 actgaggtaatggttaact 41



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>ref|NM_135742.2| Drosophila melanogaster CG12292-RA (CG12292), mRNA
          Length = 1463

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 123 tcttcctcacatggatgcc 141
           |||||||||||||||||||
Sbjct: 812 tcttcctcacatggatgcc 830



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>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence
          Length = 182913

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 99     cattcacaggaaaaatgca 117
              |||||||||||||||||||
Sbjct: 110307 cattcacaggaaaaatgca 110325



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>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence
          Length = 182912

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 99    cattcacaggaaaaatgca 117
             |||||||||||||||||||
Sbjct: 72601 cattcacaggaaaaatgca 72583



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>gb|AY089521.1| Drosophila melanogaster GM13388 full insert cDNA
          Length = 1461

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 123 tcttcctcacatggatgcc 141
           |||||||||||||||||||
Sbjct: 790 tcttcctcacatggatgcc 808



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>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 74     gaggtaatggttaactgtacaat 96
              |||||||||| ||||||||||||
Sbjct: 209746 gaggtaatgggtaactgtacaat 209768



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>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence
          Length = 166500

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 106   aggaaaaatgcagagaatcttcc 128
             |||||||||||||||| ||||||
Sbjct: 43413 aggaaaaatgcagagagtcttcc 43435



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>gb|AC093095.1| Drosophila melanogaster, chromosome 2L, region 33F-34A, BAC clone
            BACR17H02, complete sequence
          Length = 167544

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 123  tcttcctcacatggatgcc 141
            |||||||||||||||||||
Sbjct: 3850 tcttcctcacatggatgcc 3868



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 55       aatattagagatttacact 73
                |||||||||||||||||||
Sbjct: 26182772 aatattagagatttacact 26182754



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>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1316_H05
          Length = 105346

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    aatattagagatttacact 73
             |||||||||||||||||||
Sbjct: 88189 aatattagagatttacact 88171



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>ref|XM_579555.1| PREDICTED: Rattus norvegicus solute carrier family 34 (sodium
           phosphate), member 2 (Slc34a2), mRNA
          Length = 3918

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 aaaatgcagagaatcttcc 128
           |||||||||||||||||||
Sbjct: 287 aaaatgcagagaatcttcc 269



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>gb|AF157026.1|AF157026 Rattus norvegicus type IIb sodium-phosphate transporter mRNA,
           complete cds
          Length = 3950

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 aaaatgcagagaatcttcc 128
           |||||||||||||||||||
Sbjct: 304 aaaatgcagagaatcttcc 286



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>emb|AL132943.3|CEY116F11B Caenorhabditis elegans YAC Y116F11B, complete sequence
          Length = 105778

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 103  cacaggaaaaatgcagaga 121
            |||||||||||||||||||
Sbjct: 4860 cacaggaaaaatgcagaga 4878



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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 101     ttcacaggaaaaatgcaga 119
               |||||||||||||||||||
Sbjct: 1444599 ttcacaggaaaaatgcaga 1444617



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>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the complete
             sequence
          Length = 222787

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   tcttcctcacatggatgcc 141
             |||||||||||||||||||
Sbjct: 62287 tcttcctcacatggatgcc 62305



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>gb|AC005891.1|AC005891 Drosophila melanogaster, chromosome 2L, region 33F3-34A2, P1 clones
             DS08479 and DS07153, complete sequence
          Length = 136933

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   tcttcctcacatggatgcc 141
             |||||||||||||||||||
Sbjct: 22261 tcttcctcacatggatgcc 22279



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>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047B08
          Length = 57846

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    aatattagagatttacact 73
             |||||||||||||||||||
Sbjct: 23902 aatattagagatttacact 23884



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 16      acaacggtgaacaatttat 34
               |||||||||||||||||||
Sbjct: 3984965 acaacggtgaacaatttat 3984983



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>emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chromosome 12, complete
              sequence
          Length = 203805

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     aatgtcattcacaggaaaa 112
              |||||||||||||||||||
Sbjct: 125923 aatgtcattcacaggaaaa 125905



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>gb|AC159308.4| Mus musculus BAC clone RP23-187B11 from chromosome 9, complete sequence
          Length = 217927

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 74     gaggtaatggttaactgtacaat 96
              |||||||||| ||||||||||||
Sbjct: 172119 gaggtaatgggtaactgtacaat 172097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,247,780
Number of Sequences: 3902068
Number of extensions: 1247780
Number of successful extensions: 89388
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89269
Number of HSP's gapped (non-prelim): 119
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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