| Clone Name | rbaal36b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete sequence Length = 177652 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 atgtcattcacaggaaaaatg 115 ||||||||||||||||||||| Sbjct: 81851 atgtcattcacaggaaaaatg 81871
>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence Length = 116557 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 6591 aggaaaaatgcagagaatct 6572
>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG island, complete sequence Length = 174615 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 119702 aggaaaaatgcagagaatct 119683
>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a transcription elongation factor B (SIII) polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene, complete sequence Length = 55284 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 8758 aggaaaaatgcagagaatct 8739
>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map 8p21-p11, complete sequence Length = 301232 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 33093 aggaaaaatgcagagaatct 33074
>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 198714 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 aaaaatgcagagaatcttcctcac 132 ||||||||||||||||| |||||| Sbjct: 180480 aaaaatgcagagaatctgcctcac 180503
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105 Length = 340000 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 8681 aggaaaaatgcagagaatct 8662
>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18, LL56-APP region, complete sequence Length = 122318 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 67424 aggaaaaatgcagagaatct 67405
>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 116067 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 aggaaaaatgcagagaatct 125 |||||||||||||||||||| Sbjct: 24269 aggaaaaatgcagagaatct 24288
>ref|NM_053380.1| Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2 (Slc34a2), mRNA Length = 3950 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aaaatgcagagaatcttcc 128 ||||||||||||||||||| Sbjct: 304 aaaatgcagagaatcttcc 286
>gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete sequence Length = 148548 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 gactaagctctatgaatat 59 ||||||||||||||||||| Sbjct: 84663 gactaagctctatgaatat 84681
>gb|BC076465.1| Danio rerio alanine-glyoxylate aminotransferase, like, mRNA (cDNA clone MGC:91879 IMAGE:7038996), complete cds Length = 1395 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 actgaggtaatggttaact 89 ||||||||||||||||||| Sbjct: 59 actgaggtaatggttaact 41
>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence Length = 186444 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 173858 tcttcctcacatggatgcc 173876
>gb|BC070898.1| Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2, mRNA (cDNA clone MGC:91585 IMAGE:7099656), complete cds Length = 3515 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aaaatgcagagaatcttcc 128 ||||||||||||||||||| Sbjct: 315 aaaatgcagagaatcttcc 297
>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2, complete sequence Length = 244700 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 aaaaatgcagagaatcttc 127 ||||||||||||||||||| Sbjct: 18577 aaaaatgcagagaatcttc 18559
>gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, complete sequence Length = 219004 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ctcgactaagctctatgaa 56 ||||||||||||||||||| Sbjct: 32730 ctcgactaagctctatgaa 32748
>gb|AC113059.7| Mus musculus chromosome 10, clone RP23-255F14, complete sequence Length = 211296 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 cagagaatcttcctcacat 134 ||||||||||||||||||| Sbjct: 100048 cagagaatcttcctcacat 100030
>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence Length = 319367 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 cagagaatcttcctcacat 134 ||||||||||||||||||| Sbjct: 191256 cagagaatcttcctcacat 191238
>emb|AL929444.6| Human DNA sequence from clone RP11-359B3 on chromosome 10 Contains a ribosomal protein S27 (metallopanstimulin 1) (MPS1, MPS-1) (RPS27) pseudogene, complete sequence Length = 50865 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 cattcacaggaaaaatgca 117 ||||||||||||||||||| Sbjct: 37053 cattcacaggaaaaatgca 37035
>emb|AL117342.12|HSDJ453I5 Human DNA sequence from clone RP3-453I5 on chromosome 6q14.3-16.1 Contains part of the BACH2 gene for BTB and CNC homology 1 basic leucine zipper transcription factor 2 and a chromosome 11 open reading frame 17 (C11orf17) pseudogene, complete sequence Length = 97083 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 aatgtcattcacaggaaaa 112 ||||||||||||||||||| Sbjct: 63791 aatgtcattcacaggaaaa 63809
>ref|NM_001002331.1| Danio rerio alanine-glyoxylate aminotransferase, like (agxtl), mRNA Length = 1395 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 actgaggtaatggttaact 89 ||||||||||||||||||| Sbjct: 59 actgaggtaatggttaact 41
>ref|NM_135742.2| Drosophila melanogaster CG12292-RA (CG12292), mRNA Length = 1463 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 812 tcttcctcacatggatgcc 830
>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence Length = 182913 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 cattcacaggaaaaatgca 117 ||||||||||||||||||| Sbjct: 110307 cattcacaggaaaaatgca 110325
>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence Length = 182912 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 cattcacaggaaaaatgca 117 ||||||||||||||||||| Sbjct: 72601 cattcacaggaaaaatgca 72583
>gb|AY089521.1| Drosophila melanogaster GM13388 full insert cDNA Length = 1461 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 790 tcttcctcacatggatgcc 808
>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence Length = 210913 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 gaggtaatggttaactgtacaat 96 |||||||||| |||||||||||| Sbjct: 209746 gaggtaatgggtaactgtacaat 209768
>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence Length = 166500 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 106 aggaaaaatgcagagaatcttcc 128 |||||||||||||||| |||||| Sbjct: 43413 aggaaaaatgcagagagtcttcc 43435
>gb|AC093095.1| Drosophila melanogaster, chromosome 2L, region 33F-34A, BAC clone BACR17H02, complete sequence Length = 167544 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 3850 tcttcctcacatggatgcc 3868
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 aatattagagatttacact 73 ||||||||||||||||||| Sbjct: 26182772 aatattagagatttacact 26182754
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 aatattagagatttacact 73 ||||||||||||||||||| Sbjct: 88189 aatattagagatttacact 88171
>ref|XM_579555.1| PREDICTED: Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2 (Slc34a2), mRNA Length = 3918 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aaaatgcagagaatcttcc 128 ||||||||||||||||||| Sbjct: 287 aaaatgcagagaatcttcc 269
>gb|AF157026.1|AF157026 Rattus norvegicus type IIb sodium-phosphate transporter mRNA, complete cds Length = 3950 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aaaatgcagagaatcttcc 128 ||||||||||||||||||| Sbjct: 304 aaaatgcagagaatcttcc 286
>emb|AL132943.3|CEY116F11B Caenorhabditis elegans YAC Y116F11B, complete sequence Length = 105778 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 cacaggaaaaatgcagaga 121 ||||||||||||||||||| Sbjct: 4860 cacaggaaaaatgcagaga 4878
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ttcacaggaaaaatgcaga 119 ||||||||||||||||||| Sbjct: 1444599 ttcacaggaaaaatgcaga 1444617
>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the complete sequence Length = 222787 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 62287 tcttcctcacatggatgcc 62305
>gb|AC005891.1|AC005891 Drosophila melanogaster, chromosome 2L, region 33F3-34A2, P1 clones DS08479 and DS07153, complete sequence Length = 136933 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tcttcctcacatggatgcc 141 ||||||||||||||||||| Sbjct: 22261 tcttcctcacatggatgcc 22279
>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08 Length = 57846 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 aatattagagatttacact 73 ||||||||||||||||||| Sbjct: 23902 aatattagagatttacact 23884
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 acaacggtgaacaatttat 34 ||||||||||||||||||| Sbjct: 3984965 acaacggtgaacaatttat 3984983
>emb|CR974484.9| Mouse DNA sequence from clone RP23-1D11 on chromosome 12, complete sequence Length = 203805 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 aatgtcattcacaggaaaa 112 ||||||||||||||||||| Sbjct: 125923 aatgtcattcacaggaaaa 125905
>gb|AC159308.4| Mus musculus BAC clone RP23-187B11 from chromosome 9, complete sequence Length = 217927 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 74 gaggtaatggttaactgtacaat 96 |||||||||| |||||||||||| Sbjct: 172119 gaggtaatgggtaactgtacaat 172097 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,247,780 Number of Sequences: 3902068 Number of extensions: 1247780 Number of successful extensions: 89388 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89269 Number of HSP's gapped (non-prelim): 119 length of query: 141 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 120 effective length of database: 17,151,101,840 effective search space: 2058132220800 effective search space used: 2058132220800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)