ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal36b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009342.1| Triticum aestivum clone wlm4.pk0018.d5:fis, full insert mRNA sequence Length = 1719 Score = 117 bits (59), Expect = 4e-23 Identities = 90/99 (90%), Gaps = 6/99 (6%) Strand = Plus / Minus Query: 439 tcaagctgcatttcccttgggtttagacttgttgggtttggagt---cagcagcttgttt 495 |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 1518 tcaagctgcatttccctttggtttagacttattgggtttggagtcagcagcagcttgttt 1459 Query: 496 gctat---caagaggacgcttgaaaggaaggaaatctat 531 ||||| ||||||| ||||||||||||||||||||||| Sbjct: 1458 gctatcaacaagaggccgcttgaaaggaaggaaatctat 1420 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 340 accaaatcataatcatgctacagac 364 |||||||||| |||||||||||||| Sbjct: 1603 accaaatcatcatcatgctacagac 1579
>gb|AY103609.1| Zea mays PCO093348 mRNA sequence Length = 1932 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 438 ctcaagctgcatttcccttgggtttagacttgttgggtttggagtcagcagcttgtttgc 497 ||||||| ||||||||||| | ||| |||||||| | |||||||||||||||||||||| Sbjct: 1449 ctcaagcagcatttccctttgatttggacttgtttgatttggagtcagcagcttgtttgg 1390 Query: 498 tatcaagaggacgcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcct 557 ||| | ||| |||||||||||||||| ||||| |||||||| | |||||||| |||| Sbjct: 1389 catccaaaggttgcttgaaaggaaggaactctattccacccatataaggctgcagcgcct 1330 Query: 558 ttg 560 ||| Sbjct: 1329 ttg 1327
>gb|BT017097.1| Zea mays clone EL01N0361G05.c mRNA sequence Length = 1308 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 436 agctcaagctgcatttcccttgggtttagacttgttgggtttggagtcagcagcttgttt 495 ||||||||| ||||||||||| | ||| |||||||| | ||||||||||| ||||||||| Sbjct: 1114 agctcaagcagcatttccctttgatttggacttgtttgatttggagtcagaagcttgttt 1055 Query: 496 gctatcaagaggacgcttgaaaggaaggaaatctatcccacccat 540 | ||| | ||| ||||||||||||| || ||||| |||||||| Sbjct: 1054 gacatccaaaggttgcttgaaaggaagaaactctattccacccat 1010
>emb|AJ007665.1|ZMA7665 Zea mays mRNA for cytosolic seryl-tRNA synthetase Length = 1907 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 438 ctcaagctgcatttcccttgggtttagacttgttgggtttggagtcagcagcttgtttgc 497 ||||||| ||||||||||| | ||| |||||||| | ||||||||||| |||||||||| Sbjct: 1423 ctcaagcagcatttccctttgatttggacttgtttgatttggagtcagaagcttgtttga 1364 Query: 498 tatcaagaggacgcttgaaaggaaggaaatctatcccacccat 540 ||| | ||| ||||||||||||| || ||||| |||||||| Sbjct: 1363 catccaaaggttgcttgaaaggaagaaactctattccacccat 1321
>ref|NM_193493.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1335 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 1297 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 1247
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 21175573 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 21175523
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 143118 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 143068
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 73082 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 73032
>dbj|AK105730.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H03, full insert sequence Length = 1771 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 1424 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 1374
>dbj|AK069764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026G18, full insert sequence Length = 1799 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatgaacggctgcagtgcctttg 560 ||||||||||||||||||| || ||||||||| | ||||||| ||| |||| Sbjct: 1459 gcttgaaaggaaggaaatcgattccacccatgtaaggctgcaatgcttttg 1409
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 5138515 gcttgaaaggaaggaaatcgattccacccatg 5138484
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 31190 gcttgaaaggaaggaaatcgattccacccatg 31221
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 118003 gcttgaaaggaaggaaatcgattccacccatg 118034
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 5137732 gcttgaaaggaaggaaatcgattccacccatg 5137701
>dbj|AK103101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118N18, full insert sequence Length = 1846 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 1385 gcttgaaaggaaggaaatcgattccacccatg 1354
>dbj|AK059522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C08, full insert sequence Length = 1842 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 gcttgaaaggaaggaaatctatcccacccatg 541 ||||||||||||||||||| || ||||||||| Sbjct: 1381 gcttgaaaggaaggaaatcgattccacccatg 1350
>emb|CR628331.7| Zebrafish DNA sequence from clone DKEY-208C12 in linkage group 17, complete sequence Length = 92644 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 13 taatgtattttcttgtaaaatgt 35 ||||||||||||||||||||||| Sbjct: 83991 taatgtattttcttgtaaaatgt 83969
>ref|XM_644148.1| Entamoeba histolytica HM-1:IMSS aldehyde-alcohol dehydrogenase 2 (328.t00004) partial mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 882 ttcttcttcattaatgaaatat 861
>ref|XM_645874.1| Entamoeba histolytica HM-1:IMSS aldehyde-alcohol dehydrogenase 2 (189.t00002) partial mRNA Length = 2613 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 852 ttcttcttcattaatgaaatat 831
>ref|XM_647208.1| Entamoeba histolytica HM-1:IMSS aldehyde-alcohol dehydrogenase 2 (124.t00001) partial mRNA Length = 2613 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 852 ttcttcttcattaatgaaatat 831
>ref|XM_650725.1| Entamoeba histolytica HM-1:IMSS aldehyde-alcohol dehydrogenase 2 (22.t00022) partial mRNA Length = 2541 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 852 ttcttcttcattaatgaaatat 831
>ref|XM_650751.1| Entamoeba histolytica HM-1:IMSS aldehyde-alcohol dehydrogenase 2 (22.t00017) partial mRNA Length = 2613 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 852 ttcttcttcattaatgaaatat 831
>gb|U04863.1|EHU04863 Entamoeba histolytica HM1:IMSS alcohol dehydrogenase 2 (EhADH2) mRNA, complete cds Length = 2639 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 854 ttcttcttcattaatgaaatat 833
>emb|X77132.1|EHNADDAD E.histolytica mRNA for NAD+-dependent alcohol dehydrogenase Length = 2652 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 ttcttcttcattaatgaaatat 304 |||||||||||||||||||||| Sbjct: 858 ttcttcttcattaatgaaatat 837
>gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosome 6, complete sequence Length = 223116 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 ctccactgcttcttcttcatt 294 ||||||||||||||||||||| Sbjct: 59399 ctccactgcttcttcttcatt 59419
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 537 ccatgaacggctgcagtgcct 557 ||||||||||||||||||||| Sbjct: 1551809 ccatgaacggctgcagtgcct 1551789
>gb|AC160961.3| Mus musculus BAC clone RP24-288N19 from chromosome 16, complete sequence Length = 157144 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gatggtttccctttttcattt 246 ||||||||||||||||||||| Sbjct: 21875 gatggtttccctttttcattt 21855
>ref|XM_838407.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1324) partial mRNA Length = 1815 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 537 ccatgaacggctgcagtgcct 557 ||||||||||||||||||||| Sbjct: 238 ccatgaacggctgcagtgcct 218
>gb|AC126429.4| Mus musculus BAC clone RP24-403O23 from chromosome 6, complete sequence Length = 152532 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 ctccactgcttcttcttcatt 294 ||||||||||||||||||||| Sbjct: 15934 ctccactgcttcttcttcatt 15914
>emb|AL450472.14| Human DNA sequence from clone RP11-265D19 on chromosome X Contains the 5' end of the ZNF75 gene for zinc finger protein 75 (D8C6), gene FLJ23614, two novel genes, the 5' end of a novel gene, a novel pseudogene and four CpG islands, complete sequence Length = 177877 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 atgtattttcttgtaaaatgt 35 ||||||||||||||||||||| Sbjct: 69944 atgtattttcttgtaaaatgt 69924
>gb|AC112693.5| Homo sapiens chromosome 15, clone RP11-326A13, complete sequence Length = 136130 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 cttcttcttcattaatgaaat 302 ||||||||||||||||||||| Sbjct: 41109 cttcttcttcattaatgaaat 41089
>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence Length = 132337 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 taaacaaaacaaccaaaatggaaaa 89 |||||||||||| |||||||||||| Sbjct: 121387 taaacaaaacaaacaaaatggaaaa 121411
>gb|AC023114.5| Homo sapiens BAC clone RP11-266O8 from 15, complete sequence Length = 164242 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 cttcttcttcattaatgaaat 302 ||||||||||||||||||||| Sbjct: 55742 cttcttcttcattaatgaaat 55762
>gb|AC005628.4| Homo sapiens PAC clone RP4-613C23 from Xq23, complete sequence Length = 117489 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 atgtattttcttgtaaaatgt 35 ||||||||||||||||||||| Sbjct: 115539 atgtattttcttgtaaaatgt 115519
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 actaatgtattttcttgtaaa 31 ||||||||||||||||||||| Sbjct: 1183501 actaatgtattttcttgtaaa 1183481
>gb|AC119431.13| Mus musculus chromosome 1, clone RP24-100O3, complete sequence Length = 205163 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 gagtcagcagcttgtttgct 498 |||||||||||||||||||| Sbjct: 93908 gagtcagcagcttgtttgct 93889
>gb|AC119878.7| Mus musculus chromosome 3, clone RP24-329A3, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tggaagatactaatgtattt 22 |||||||||||||||||||| Sbjct: 36864 tggaagatactaatgtattt 36845
>gb|AC117814.14| Mus musculus chromosome 15, clone RP24-572J18, complete sequence Length = 169092 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 tgttttgtaaacaaaacaaccaaa 81 ||||||||||||||||||| |||| Sbjct: 10807 tgttttgtaaacaaaacaaacaaa 10830
>gb|AC145894.3| Pan troglodytes BAC clone RP43-8D18 from 7, complete sequence Length = 199372 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 attaacaaaaggatgtatcattat 397 |||||||||||||||||| ||||| Sbjct: 128840 attaacaaaaggatgtattattat 128863
>gb|AC087843.2| Bos taurus clone RP42-550C12, complete sequence Length = 157165 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 caggcagcctggattgcaat 58 |||||||||||||||||||| Sbjct: 97251 caggcagcctggattgcaat 97232
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 caggcagcctggattgcaat 58 |||||||||||||||||||| Sbjct: 540096 caggcagcctggattgcaat 540077
>gb|AC161537.7| Mus musculus chromosome 15, clone RP23-471J11, complete sequence Length = 188471 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 tgttttgtaaacaaaacaaccaaa 81 ||||||||||||||||||| |||| Sbjct: 47675 tgttttgtaaacaaaacaaacaaa 47652
>gb|AC121606.3| Mus musculus BAC clone RP23-314H5 from chromosome 1, complete sequence Length = 200095 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gagtcagcagcttgtttgct 498 |||||||||||||||||||| Sbjct: 198972 gagtcagcagcttgtttgct 198991
>gb|AC146110.2| Pan troglodytes BAC clone RP43-22L15 from 7, complete sequence Length = 185754 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 attaacaaaaggatgtatcattat 397 |||||||||||||||||| ||||| Sbjct: 140261 attaacaaaaggatgtattattat 140284
>gb|AC145986.2| Pan troglodytes BAC clone RP43-41C9 from 7, complete sequence Length = 159512 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 aaaacaaccaaaatggaaaaccaa 93 ||||||| |||||||||||||||| Sbjct: 87026 aaaacaaacaaaatggaaaaccaa 87003
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 atggtttccctttttcattt 246 |||||||||||||||||||| Sbjct: 4689995 atggtttccctttttcattt 4689976
>gb|AC135413.43| Medicago truncatula clone mth2-16n19, complete sequence Length = 92216 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tttccctttttcatttggtt 250 |||||||||||||||||||| Sbjct: 53944 tttccctttttcatttggtt 53925
>emb|AL365222.24| Human DNA sequence from clone RP11-274E6 on chromosome 6, complete sequence Length = 166244 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttcttcttcattaatgaaa 301 |||||||||||||||||||| Sbjct: 84976 cttcttcttcattaatgaaa 84957
>emb|AL359737.16| Human DNA sequence from clone RP11-484H12 on chromosome 13 Contains the 3' end of a novel gene, a novel pseudogene, two novel genes, a feminization 1 homolog a (FEM1A) (KIAA1785) pseudogene, a telomeric repeat binding factor (NIMA-interacting) 1 (TERF1) (TRF PIN2 TRF1 TRBF1 hTRF1-AS) pseudogene, a chromosome 21 open reading frame 70 (C21orf70) pseudogene and four CpG islands, complete sequence Length = 93307 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 35972 atactaatgtatgttcttgtaaaa 35949
>emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chromosome 9 Contains part of the TRPM3 gene for transient receptor potential cation channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726) and a pseudogene similar to part of CDC91 cell division cycle 91-like 1 (S. cerevisiae) (CDC91L1), complete sequence Length = 141339 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaccaaaatggaaaaccaat 94 |||||||||||||||||||| Sbjct: 66351 aaccaaaatggaaaaccaat 66370
>emb|AL161427.16| Human DNA sequence from clone RP11-285P3 on chromosome 1, complete sequence Length = 77190 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 taatgtattttcttgtaaaa 32 |||||||||||||||||||| Sbjct: 8788 taatgtattttcttgtaaaa 8807
>emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on chromosome 22, complete sequence Length = 172545 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 81650 atactaatgtatgttcttgtaaaa 81627
>gb|AC158238.2| Mus musculus BAC clone RP23-106F10 from chromosome 9, complete sequence Length = 242356 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gatggaaataagtttccatt 423 |||||||||||||||||||| Sbjct: 236072 gatggaaataagtttccatt 236053
>emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on chromosome 11 Contains the 5' end of the Gabrg2 gene for gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 2, the 3' end of the Gabra1 gene for gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 1 and the 3' end of a novel gene, complete sequence Length = 186884 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 attatctgcctgatggaaat 412 |||||||||||||||||||| Sbjct: 67009 attatctgcctgatggaaat 66990
>gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, complete sequence Length = 179834 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tggtttccctttttcatttg 247 |||||||||||||||||||| Sbjct: 170247 tggtttccctttttcatttg 170266
>gb|AC090964.10| Papio anubis clone rp41-177g23, complete sequence Length = 182747 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ttttgtaaacaaaacaaccaaaat 83 ||||| |||||||||||||||||| Sbjct: 70272 ttttgaaaacaaaacaaccaaaat 70249
>gb|AC161479.5| Pan troglodytes BAC clone CH251-168J1 from chromosome unknown, complete sequence Length = 206985 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttcttcttcattaatgaaa 301 |||||||||||||||||||| Sbjct: 17079 cttcttcttcattaatgaaa 17060
>gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, complete sequence Length = 171112 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tggtttccctttttcatttg 247 |||||||||||||||||||| Sbjct: 130065 tggtttccctttttcatttg 130046
>gb|AC009884.8| Homo sapiens chromosome 8, clone RP11-420B22, complete sequence Length = 161443 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tgaaaggaaggaaatctatc 532 |||||||||||||||||||| Sbjct: 29644 tgaaaggaaggaaatctatc 29625
>dbj|AB201216.1| Microhyla ornata mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher:KUHE21982 Length = 629 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 ttgggtttagacttgttgggtttg 478 |||||||||||| ||||||||||| Sbjct: 507 ttgggtttagacctgttgggtttg 484
>gb|AC159464.1| Pan troglodytes BAC clone CH251-505P8 from chromosome unknown, complete sequence Length = 175216 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttcttcttcattaatgaaa 301 |||||||||||||||||||| Sbjct: 112629 cttcttcttcattaatgaaa 112610
>gb|AC159651.1| Pan troglodytes BAC clone CH251-495E21 from chromosome unknown, complete sequence Length = 154233 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cttcttcttcattaatgaaa 301 |||||||||||||||||||| Sbjct: 10402 cttcttcttcattaatgaaa 10421
>gb|AC158510.2| Mus musculus BAC clone RP24-236E11 from chromosome 9, complete sequence Length = 178963 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gatggaaataagtttccatt 423 |||||||||||||||||||| Sbjct: 48384 gatggaaataagtttccatt 48365
>gb|AC092638.2| Homo sapiens BAC clone RP11-363G3 from 2, complete sequence Length = 167941 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 gcttcttcttcattaatgaaatat 304 ||||||| |||||||||||||||| Sbjct: 26667 gcttcttgttcattaatgaaatat 26644
>gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, complete sequence Length = 188121 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 aaataatggggcaccaaatcataa 351 ||||||||||||||||||| |||| Sbjct: 86755 aaataatggggcaccaaattataa 86732
>gb|AC020601.10| Homo sapiens BAC clone RP11-451C14 from 2, complete sequence Length = 204164 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 56440 atactaatgtatgttcttgtaaaa 56463
>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence Length = 169155 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 gatactaatgtattttcttgtaaa 31 |||||||||||||||| ||||||| Sbjct: 50266 gatactaatgtattttattgtaaa 50289
>gb|AC007350.1|AC007350 Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence Length = 153339 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 aaaacaaccaaaatggaaaaccaa 93 ||||||| |||||||||||||||| Sbjct: 43752 aaaacaaacaaaatggaaaaccaa 43729
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 atcccacccatgaacggctg 549 |||||||||||||||||||| Sbjct: 4886283 atcccacccatgaacggctg 4886264
>emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chromosome 22, complete sequence Length = 164239 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 12230 atactaatgtatgttcttgtaaaa 12253
>emb|BX649456.5| Mouse DNA sequence from clone RP24-481E15 on chromosome 4, complete sequence Length = 61622 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 aaacaaaacaaccaaaatggaaaa 89 |||||||| ||||||||||||||| Sbjct: 26692 aaacaaaaaaaccaaaatggaaaa 26669
>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete sequences Length = 168180 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 112485 atactaatgtatgttcttgtaaaa 112462
>gb|AC000370.1|HSAC000370 Human cosmid g1980a084, complete sequence Length = 44498 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 attaacaaaaggatgtatcattat 397 |||||||||||||||||| ||||| Sbjct: 37534 attaacaaaaggatgtattattat 37511
>emb|AJ341058.1|HSA341058 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KH7R Length = 829 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ttttgttaaaaataatgggg 338 |||||||||||||||||||| Sbjct: 736 ttttgttaaaaataatgggg 755
>emb|AJ331723.1|HSA331723 Homo sapiens genomic sequence surrounding NotI site, clone NL3-CA14C Length = 614 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaacaaccaaaatggaaaac 90 |||||||||||||||||||| Sbjct: 549 aaacaaccaaaatggaaaac 530
>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004 Length = 340000 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 95906 atactaatgtatgttcttgtaaaa 95883
>emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2, complete sequence Length = 166239 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 91320 atactaatgtatgttcttgtaaaa 91297
>emb|CR759867.5| Zebrafish DNA sequence from clone CH211-233F16 in linkage group 19, complete sequence Length = 177867 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aagatactaatgtattttct 25 |||||||||||||||||||| Sbjct: 134178 aagatactaatgtattttct 134159
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgcaatgttttgtaaacaaa 72 |||||||||||||||||||| Sbjct: 82367 tgcaatgttttgtaaacaaa 82348
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgcaatgttttgtaaacaaa 72 |||||||||||||||||||| Sbjct: 159725 tgcaatgttttgtaaacaaa 159706
>dbj|AP006261.1| Homo sapiens genomic DNA, chromosome 18, clone:CTD-2594A10, complete sequence Length = 189276 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 29535 atactaatgtatgttcttgtaaaa 29558
>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence Length = 174174 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 taatgtattttcttgtaaaatgtg 36 ||||||||| |||||||||||||| Sbjct: 106592 taatgtattatcttgtaaaatgtg 106615
>gb|AC005583.1|AC005583 Homo sapiens clone UWGC:g5129s427 from 7q31, complete sequence Length = 41501 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 attaacaaaaggatgtatcattat 397 |||||||||||||||||| ||||| Sbjct: 2655 attaacaaaaggatgtattattat 2632
>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete sequence Length = 184770 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 atactaatgtattttcttgtaaaa 32 |||||||||||| ||||||||||| Sbjct: 10839 atactaatgtatgttcttgtaaaa 10862
>gb|AC002995.1|AC002995 Human Cosmid g5129z159 from 7q31.3, complete sequence Length = 44668 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 attaacaaaaggatgtatcattat 397 |||||||||||||||||| ||||| Sbjct: 38010 attaacaaaaggatgtattattat 37987
>dbj|AP000354.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1674E1 Length = 164756 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ttttgtaaacaaaacaaccaaaat 83 ||||| |||||||||||||||||| Sbjct: 93294 ttttgaaaacaaaacaaccaaaat 93317 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,545,552 Number of Sequences: 3902068 Number of extensions: 7545552 Number of successful extensions: 143074 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142649 Number of HSP's gapped (non-prelim): 423 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
