Clone Information

BLAST Search Result

Clone Name	rbaal36a23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_473041.1\| Oryza sativa (japonica cultivar-group), predic...	212	1e-51
2	dbj\|AK059415.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	1e-51
3	dbj\|AK058436.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	212	1e-51
4	dbj\|AK099054.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	204	3e-49
5	gb\|BT018274.1\| Zea mays clone EL01T0203E04.c mRNA sequence	135	2e-28
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	117	5e-23
7	emb\|AL606627.3\|OSJN00052 Oryza sativa genomic DNA, chromosome 4,...	117	5e-23
8	ref\|XM_466667.1\| Oryza sativa (japonica cultivar-group), mRNA	58	4e-05
9	dbj\|AK102477.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
10	emb\|AL512636.12\| Human DNA sequence from clone RP11-213D12 on ch...	44	0.55
11	emb\|AL157394.15\| Human DNA sequence from clone RP11-399O19 on ch...	42	2.2
12	emb\|AL136231.12\| Human DNA sequence from clone RP11-6J24 on chro...	42	2.2
13	gb\|AC144741.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.6
14	gb\|AC107206.4\| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom...	40	8.6
15	gb\|AY244814.1\| Malus x domestica NAD-dependent sorbitol dehydrog...	40	8.6
16	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	8.6
17	ref\|XM_391208.1\| Gibberella zeae PH-1 chromosome 3 GAOA_DACDE Ga...	40	8.6
18	gb\|AC125527.3\| Mus musculus BAC clone RP24-550H17 from chromosom...	40	8.6
19	gb\|AC114341.9\| Homo sapiens chromosome 18, clone RP11-248M19, co...	40	8.6
20	gb\|AC153656.4\| Mus musculus BAC clone RP23-428O19 from chromosom...	40	8.6
21	emb\|AL162272.10\| Human DNA sequence from clone RP11-145E8 on chr...	40	8.6
22	emb\|AL023288.2\|SPBC56F2 S.pombe chromosome II cosmid c56F2	40	8.6
23	gb\|AC084817.5\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.6
24	gb\|AC009806.9\| Homo sapiens chromosome 11, clone RP11-51B23, com...	40	8.6
25	dbj\|AP007162.1\| Aspergillus oryzae RIB40 genomic DNA, SC102	40	8.6
26	dbj\|AK165364.1\| Mus musculus 6 days neonate spleen cDNA, RIKEN f...	40	8.6
27	gb\|AE009951.2\| Fusobacterium nucleatum subsp. nucleatum ATCC 255...	40	8.6
28	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
29	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
30	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
31	gb\|AC008824.6\|AC008824 Homo sapiens chromosome 5 clone CTD-2132K...	40	8.6
32	gb\|AC108066.3\| Homo sapiens BAC clone RP11-521H5 from 2, complet...	40	8.6
33	ref\|XM_235721.3\| PREDICTED: Rattus norvegicus insulin receptor s...	40	8.6
34	ref\|XM_575634.1\| PREDICTED: Rattus norvegicus similar to LRRGT00...	40	8.6
35	dbj\|AP004063.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
36	dbj\|AP004881.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
37	emb\|AL731729.10\| Mouse DNA sequence from clone RP23-92L12 on chr...	40	8.6
38	dbj\|AP002841.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.6
39	gb\|AC104874.11\| Mus musculus chromosome 3, clone RP23-453I14, co...	40	8.6
40	gb\|AE016877.1\| Bacillus cereus ATCC 14579, complete genome	40	8.6
41	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	8.6
42	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	8.6
43	gb\|AC091981.4\| Homo sapiens chromosome 5 clone RP11-549L3, compl...	40	8.6
44	gb\|M86819.1\|CDOGAOA Dactylium dendroides (asexual stage of Clado...	40	8.6

>ref|XM_473041.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1308

 Score =  212 bits (107), Expect = 1e-51
 Identities = 276/331 (83%), Gaps = 6/331 (1%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 332
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1217 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1164

                                                                        
Query: 333  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 392
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1163 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1104

                                                                        
Query: 393  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 452
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 1103 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1044

                                                                        
Query: 453  gccttttccacagccgtcgattcctcaaacctaaggtatcctgaatcatcccccttactg 512
            ||||||||  | ||| | || ||||| |||| || |||||||||||| |||||  | |||
Sbjct: 1043 gccttttcagctgccttagaatcctcgaaccgaatgtatcctgaatcctcccctatgctg 984

                                                                        
Query: 513  aagtccacgtaccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaa 572
            |||||||| |||||||||||||| |||||| |||| | |||||| ||||| |||||||||
Sbjct: 983  aagtccacataccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaa 924

                                           
Query: 573  actggttccttgtcattttctgaagggcttt 603
            | ||| || |   ||||||||||||| ||||
Sbjct: 923  attggatcatccgcattttctgaaggacttt 893

to top

>dbj|AK059415.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D05, full
            insert sequence
          Length = 1595

 Score =  212 bits (107), Expect = 1e-51
 Identities = 276/331 (83%), Gaps = 6/331 (1%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 332
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1247 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1194

                                                                        
Query: 333  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 392
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1193 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1134

                                                                        
Query: 393  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 452
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 1133 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 1074

                                                                        
Query: 453  gccttttccacagccgtcgattcctcaaacctaaggtatcctgaatcatcccccttactg 512
            ||||||||  | ||| | || ||||| |||| || |||||||||||| |||||  | |||
Sbjct: 1073 gccttttcagctgccttagaatcctcgaaccgaatgtatcctgaatcctcccctatgctg 1014

                                                                        
Query: 513  aagtccacgtaccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaa 572
            |||||||| |||||||||||||| |||||| |||| | |||||| ||||| |||||||||
Sbjct: 1013 aagtccacataccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaa 954

                                           
Query: 573  actggttccttgtcattttctgaagggcttt 603
            | ||| || |   ||||||||||||| ||||
Sbjct: 953  attggatcatccgcattttctgaaggacttt 923

to top

>dbj|AK058436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F07, full
           insert sequence
          Length = 1449

 Score =  212 bits (107), Expect = 1e-51
 Identities = 276/331 (83%), Gaps = 6/331 (1%)
 Strand = Plus / Minus

                                                                       
Query: 273 ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 332
           ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 505 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 452

                                                                       
Query: 333 tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 392
           || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 451 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 392

                                                                       
Query: 393 gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 452
           ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||||
Sbjct: 391 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgg 332

                                                                       
Query: 453 gccttttccacagccgtcgattcctcaaacctaaggtatcctgaatcatcccccttactg 512
           ||||||||  | ||| | || ||||| |||| || |||||||||||| |||||  | |||
Sbjct: 331 gccttttcagctgccttagaatcctcgaaccgaatgtatcctgaatcctcccctatgctg 272

                                                                       
Query: 513 aagtccacgtaccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaa 572
           |||||||| |||||||||||||| |||||| |||| | |||||| ||||| |||||||||
Sbjct: 271 aagtccacataccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaa 212

                                          
Query: 573 actggttccttgtcattttctgaagggcttt 603
           | ||| || |   ||||||||||||| ||||
Sbjct: 211 attggatcatccgcattttctgaaggacttt 181

to top

>dbj|AK099054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149O10, full
            insert sequence
          Length = 1594

 Score =  204 bits (103), Expect = 3e-49
 Identities = 275/331 (83%), Gaps = 6/331 (1%)
 Strand = Plus / Minus

                                                                        
Query: 273  ctgttgttcttccagtcccttcctcccctgttgcttctattattgctattgtatctccct 332
            ||||| |||||||||||||||||   |||||| |||||||| |  ||||   || | |||
Sbjct: 1248 ctgttattcttccagtcccttcc---cctgttacttctattgtctctat---attttcct 1195

                                                                        
Query: 333  tggccaccctttatttcactccaataatctttctcagcttgtccagacacaggttccaag 392
            || || ||||||||  ||||||||||||| ||||||||||| || |||||||||||||| 
Sbjct: 1194 tgaccgccctttatcgcactccaataatccttctcagcttgaccggacacaggttccaaa 1135

                                                                        
Query: 393  gtaacaaggcggcccttcataatcaaaccaccttcatccgcaagagctgcaaatgcacgg 452
            ||||||||  |||||||||||||||||||||||||||| | || ||| |||| |||||| 
Sbjct: 1134 gtaacaagatggcccttcataatcaaaccaccttcatctgaaatagccgcaagtgcacgt 1075

                                                                        
Query: 453  gccttttccacagccgtcgattcctcaaacctaaggtatcctgaatcatcccccttactg 512
            ||||||||  | ||| | || ||||| |||| || |||||||||||| |||||  | |||
Sbjct: 1074 gccttttcagctgccttagaatcctcgaaccgaatgtatcctgaatcctcccctatgctg 1015

                                                                        
Query: 513  aagtccacgtaccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaa 572
            |||||||| |||||||||||||| |||||| |||| | |||||| ||||| |||||||||
Sbjct: 1014 aagtccacataccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaa 955

                                           
Query: 573  actggttccttgtcattttctgaagggcttt 603
            | ||| || |   ||||||||||||| ||||
Sbjct: 954  attggatcatccgcattttctgaaggacttt 924

to top

>gb|BT018274.1| Zea mays clone EL01T0203E04.c mRNA sequence
          Length = 1481

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                        
Query: 349  cactccaataatctttctcagcttgtccagacacaggttccaaggtaacaaggcggccct 408
            ||||||||||||| || |||||||| |||||||||||||||||  | || | | |||| |
Sbjct: 1222 cactccaataatccttttcagcttgaccagacacaggttccaaaatgactatgtggcctt 1163

                                                                        
Query: 409  tcataatcaaaccaccttcatccgcaagagctgcaaatgcacgggccttttccacagccg 468
            ||||| |||||||||||||||| ||||  |||||||||||||||||||| ||  | || |
Sbjct: 1162 tcatagtcaaaccaccttcatctgcaatggctgcaaatgcacgggccttgtcagctgctg 1103

                                                                        
Query: 469  tcgattcctcaaacctaaggtatcctgaatcatcccccttactgaagtccacgtaccgca 528
              |  |||||||||| || | |||| ||||| |||||  | ||||||||||| |||||||
Sbjct: 1102 caggatcctcaaaccgaatgaatccagaatcttccccaatgctgaagtccacataccgca 1043

                                                    
Query: 529  ctgtgccaaatttggcaaaatattctttgaaatcctccct 568
            ||||||||||||| |  || | |||||| |||||||||||
Sbjct: 1042 ctgtgccaaatttagtgaattcttcttttaaatcctccct 1003



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 270  cctctgttgttcttccagtcccttcctc 297
            |||| ||||||||||||||||| |||||
Sbjct: 1295 cctcggttgttcttccagtcccgtcctc 1268

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                            
Query: 378      gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 437
                |||||||||||||| ||||||||  |||||||||||||||||||||||||||| | || |
Sbjct: 24859157 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 24859216

                                                                            
Query: 438      gctgcaaatgcacgggccttttccacagccgtcgattcctcaaacctaaggtatcctgaa 497
                || |||| |||||||||||||||  | ||| | || ||||| |||| || ||||||||||
Sbjct: 24859217 gccgcaagtgcacgggccttttcagctgccttagaatcctcgaaccgaatgtatcctgaa 24859276

                                       
Query: 498      tcatcccccttactgaagtccac 520
                || |||||  | |||||||||||
Sbjct: 24859277 tcctcccctatgctgaagtccac 24859299



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 524      ccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaaactggttcctt 583
                |||||||||||| |||||| |||| | |||||| ||||| |||||||||| ||| || | 
Sbjct: 24859939 ccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaaattggatcatc 24859998

                                    
Query: 584      gtcattttctgaagggcttt 603
                  ||||||||||||| ||||
Sbjct: 24859999 cgcattttctgaaggacttt 24860018



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 330      ccttggccaccctttatttcactccaataatctttctcagcttg 373
                ||||| || ||||||||  ||||||||||||| |||||||||||
Sbjct: 24858805 ccttgaccgccctttatcgcactccaataatccttctcagcttg 24858848

to top

>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score =  117 bits (59), Expect = 5e-23
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                          
Query: 378    gacacaggttccaaggtaacaaggcggcccttcataatcaaaccaccttcatccgcaaga 437
              |||||||||||||| ||||||||  |||||||||||||||||||||||||||| | || |
Sbjct: 120873 gacacaggttccaaagtaacaagatggcccttcataatcaaaccaccttcatctgaaata 120932

                                                                          
Query: 438    gctgcaaatgcacgggccttttccacagccgtcgattcctcaaacctaaggtatcctgaa 497
              || |||| |||||||||||||||  | ||| | || ||||| |||| || ||||||||||
Sbjct: 120933 gccgcaagtgcacgggccttttcagctgccttagaatcctcgaaccgaatgtatcctgaa 120992

                                     
Query: 498    tcatcccccttactgaagtccac 520
              || |||||  | |||||||||||
Sbjct: 120993 tcctcccctatgctgaagtccac 121015



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                          
Query: 524    ccgcactgtgccaaatttggcaaaatattctttgaaatcctcccttgaaactggttcctt 583
              |||||||||||| |||||| |||| | |||||| ||||| |||||||||| ||| || | 
Sbjct: 121655 ccgcactgtgccgaatttgccaaattcttctttaaaatcttcccttgaaattggatcatc 121714

                                  
Query: 584    gtcattttctgaagggcttt 603
                ||||||||||||| ||||
Sbjct: 121715 cgcattttctgaaggacttt 121734



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 330    ccttggccaccctttatttcactccaataatctttctcagcttg 373
              ||||| || ||||||||  ||||||||||||| |||||||||||
Sbjct: 120521 ccttgaccgccctttatcgcactccaataatccttctcagcttg 120564

to top

>ref|XM_466667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1718

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 485  aaggtatcctgaatcatcccccttactgaagtccacgtaccgcactgtgccaaattt 541
            ||||||||| || ||||||||  ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1208 aaggtatcccgattcatccccgatactgaagtccacataccgaactgttccaaattt 1152



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 352  tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 399
            |||||||||| ||||||||||  |||| |||||| |||||||||||||
Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294

to top

>dbj|AK102477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I09, full
            insert sequence
          Length = 1718

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 485  aaggtatcctgaatcatcccccttactgaagtccacgtaccgcactgtgccaaattt 541
            ||||||||| || ||||||||  ||||||||||||| ||||| ||||| ||||||||
Sbjct: 1208 aaggtatcccgattcatccccgatactgaagtccacataccgaactgttccaaattt 1152



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 352  tccaataatctttctcagcttgtccagacacaggttccaaggtaacaa 399
            |||||||||| ||||||||||  |||| |||||| |||||||||||||
Sbjct: 1341 tccaataatccttctcagcttcaccagtcacaggctccaaggtaacaa 1294

to top

>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 160255

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 537   aatttggcaaaatattctttga 558
             ||||||||||||||||||||||
Sbjct: 87773 aatttggcaaaatattctttga 87794

to top

>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the
             5' end of a novel gene (MGC22805), a novel pseudogene
             (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family
             domain containing protein (KIAA1373 FLJ35627 FLJ33359), a
             novel gene (FLJ36021), the ACTA2 gene for actin alpha 2
             smooth muscle aorta, the TNFRSF6 gene for tumor necrosis
             factor receptor superfamily member 6 and two CpG islands,
             complete sequence
          Length = 187313

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    gctgtggaggcagcaagcagg 104
             |||||||||||||||||||||
Sbjct: 72875 gctgtggaggcagcaagcagg 72855

to top

>emb|AL136231.12| Human DNA sequence from clone RP11-6J24 on chromosome 9p24.1-24.3
             Contains the 3' end of the SLC1A1 gene for solute carrier
             family 1 (neuronal/epithelial high affinity glutamate
             transporter, system Xag), the 5' end of a novel gene
             (FLJ10058), the gene for Hsp90-associating relative of
             Cdc37 (HARC) (FLJ20639), the 3' end of the AK3L1 gene for
             adenylate kinase 3 like 1 (AK3), a ribosomal protein S6
             (RPS6) pseudogene and 3 CpG islands, complete sequence
          Length = 160012

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 599   gcttttatcatcctttttaacagat 623
             |||||||| ||||||||||||||||
Sbjct: 12297 gcttttattatcctttttaacagat 12273

to top

>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    tggcaaaatattctttgaaa 560
              ||||||||||||||||||||
Sbjct: 108465 tggcaaaatattctttgaaa 108446

to top

>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
              sequence
          Length = 154558

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    tggcaaaatattctttgaaa 560
              ||||||||||||||||||||
Sbjct: 114596 tggcaaaatattctttgaaa 114577

to top

>gb|AY244814.1| Malus x domestica NAD-dependent sorbitol dehydrogenase 6 gene,
           partial cds
          Length = 1163

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 612 tttttaacagattgtgcatc 631
           ||||||||||||||||||||
Sbjct: 530 tttttaacagattgtgcatc 549

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 541      tggcaaaatattctttgaaa 560
                ||||||||||||||||||||
Sbjct: 23278115 tggcaaaatattctttgaaa 23278096

to top

>ref|XM_391208.1| Gibberella zeae PH-1 chromosome 3 GAOA_DACDE Galactose oxidase
            precursor (GAO) (FG11032.1) partial mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  cacctctgttgttcttccag 287
            ||||||||||||||||||||
Sbjct: 1521 cacctctgttgttcttccag 1540

to top

>gb|AC125527.3| Mus musculus BAC clone RP24-550H17 from chromosome 1, complete sequence
          Length = 153191

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   attttctgaagggcttttat 606
             ||||||||||||||||||||
Sbjct: 58652 attttctgaagggcttttat 58671

to top

>gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, complete sequence
          Length = 169813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 342    tttatttcactccaataatctttc 365
              ||||||||||||||||| ||||||
Sbjct: 133299 tttatttcactccaatattctttc 133276

to top

>gb|AC153656.4| Mus musculus BAC clone RP23-428O19 from chromosome 1, complete sequence
          Length = 196584

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 587    attttctgaagggcttttat 606
              ||||||||||||||||||||
Sbjct: 170501 attttctgaagggcttttat 170520

to top

>emb|AL162272.10| Human DNA sequence from clone RP11-145E8 on chromosome 10 Contains a
             novel gene (KIAA1074), the 3' end of the YME1L1 gene for
             YME1-like 1 (S. cerevisiae) and a CpG island, complete
             sequence
          Length = 154904

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 43    gtaaaatttaaagcag-acacagaaaaa 69
             |||||||||||||||| |||||||||||
Sbjct: 54491 gtaaaatttaaagcagcacacagaaaaa 54464

to top

>emb|AL023288.2|SPBC56F2 S.pombe chromosome II cosmid c56F2
          Length = 40765

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 542   ggcaaaatattctttgaaat 561
             ||||||||||||||||||||
Sbjct: 20774 ggcaaaatattctttgaaat 20793

to top

>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
            complete sequence
          Length = 136713

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 541  tggcaaaatattctttgaaa 560
            ||||||||||||||||||||
Sbjct: 6632 tggcaaaatattctttgaaa 6613

to top

>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence
          Length = 175223

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    gaccaccccgcttcccacca 248
              ||||||||||||||||||||
Sbjct: 156820 gaccaccccgcttcccacca 156839

to top

>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      ttaaagcagacacagaaaaa 69
               ||||||||||||||||||||
Sbjct: 1768146 ttaaagcagacacagaaaaa 1768127

to top

>dbj|AK165364.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430113H13 product:hypothetical protein,
            full insert sequence
          Length = 3136

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  ctggttccttgtcattttct 593
            ||||||||||||||||||||
Sbjct: 1245 ctggttccttgtcattttct 1226

to top

>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     attgctattgtatctccctt 333
               ||||||||||||||||||||
Sbjct: 1315389 attgctattgtatctccctt 1315408

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 541     tggcaaaatattctttgaaa 560
               ||||||||||||||||||||
Sbjct: 4030600 tggcaaaatattctttgaaa 4030581

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 541      tggcaaaatattctttgaaa 560
                ||||||||||||||||||||
Sbjct: 23271143 tggcaaaatattctttgaaa 23271124

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 485      aaggtatcctgaatcatcccccttactgaagtccac 520
                ||||||||| || ||||||||  |||||||||||||
Sbjct: 24001126 aaggtatcccgattcatccccgatactgaagtccac 24001161

to top

>gb|AC008824.6|AC008824 Homo sapiens chromosome 5 clone CTD-2132K6, complete sequence
          Length = 121178

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    tatcttgcttttcctcacta 135
              ||||||||||||||||||||
Sbjct: 108304 tatcttgcttttcctcacta 108323

to top

>gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complete sequence
          Length = 158599

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   tcactccaataatctttctc 367
             ||||||||||||||||||||
Sbjct: 92975 tcactccaataatctttctc 92994

to top

>ref|XM_235721.3| PREDICTED: Rattus norvegicus insulin receptor substrate 4 (IRS-4),
           mRNA
          Length = 4083

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 agtggcgaccaccccgcttc 242
           ||||||||||||||||||||
Sbjct: 609 agtggcgaccaccccgcttc 628

to top

>ref|XM_575634.1| PREDICTED: Rattus norvegicus similar to LRRGT00057 (LOC500284), mRNA
          Length = 1625

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cttcccaccaccgtggtgccttcc 262
            |||||||||||||||| |||||||
Sbjct: 1511 cttcccaccaccgtggagccttcc 1488

to top

>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1476_F05
          Length = 125426

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 485   aaggtatcctgaatcatcccccttactgaagtccac 520
             ||||||||| || ||||||||  |||||||||||||
Sbjct: 36164 aaggtatcccgattcatccccgatactgaagtccac 36199

to top

>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 485    aaggtatcctgaatcatcccccttactgaagtccac 520
              ||||||||| || ||||||||  |||||||||||||
Sbjct: 135090 aaggtatcccgattcatccccgatactgaagtccac 135125

to top

>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
              sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 582    ttgtcattttctgaagggcttttatcatccttttta 617
              |||||| ||||||||||||| ||||| | |||||||
Sbjct: 121160 ttgtcaatttctgaagggctcttatctttcttttta 121125

to top

>dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-239P2, complete
              sequence
          Length = 176485

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    ttccttgtcattttctgaag 597
              ||||||||||||||||||||
Sbjct: 138322 ttccttgtcattttctgaag 138303

to top

>gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, complete sequence
          Length = 182940

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    ctggttccttgtcattttct 593
              ||||||||||||||||||||
Sbjct: 116795 ctggttccttgtcattttct 116776

to top

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 345     atttcactccaataatctttctca 368
               ||||| ||||||||||||||||||
Sbjct: 2217978 atttctctccaataatctttctca 2217955

to top

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 414     atcaaaccaccttcatccgc 433
               ||||||||||||||||||||
Sbjct: 2464799 atcaaaccaccttcatccgc 2464780

to top

>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     ctgttgcttctattattgct 319
               ||||||||||||||||||||
Sbjct: 2014367 ctgttgcttctattattgct 2014348

to top

>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 301   tgttgcttctattattgctattgt 324
             ||||||||||||||||| ||||||
Sbjct: 45887 tgttgcttctattattgttattgt 45910

to top

>gb|M86819.1|CDOGAOA Dactylium dendroides (asexual stage of Cladobotryum dendroides)
            galactose oxidase monomer (gaoA) gene, complete cds
          Length = 3466

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  cacctctgttgttcttccag 287
            ||||||||||||||||||||
Sbjct: 2287 cacctctgttgttcttccag 2306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,453,914
Number of Sequences: 3902068
Number of extensions: 6453914
Number of successful extensions: 127045
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 126618
Number of HSP's gapped (non-prelim): 421
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result