ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35l23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 553 bits (279), Expect = e-154 Identities = 279/279 (100%) Strand = Plus / Minus Query: 186 ttatgaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgag 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 772 ttatgaggaatatgtaaaaattcatttatacatagaagactcgttcaggcaaccaccgag 713 Query: 246 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 653 Query: 306 agtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 agtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgc 593 Query: 366 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 533 Query: 426 ccttcttgcgtccggtgagggtgagcaccggcgcggtgg 464 ||||||||||||||||||||||||||||||||||||||| Sbjct: 532 ccttcttgcgtccggtgagggtgagcaccggcgcggtgg 494
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgag 13161232
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgag 598
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 579 agcttgtcggcctccttcttgcggccggtgag 548
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 601 agcttgtcggcctccttcttgcggccggtgag 570
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgag 598
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgag 13115507
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Plus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgag 169510
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 182 bits (92), Expect = 7e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgag 150435
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 174 bits (88), Expect = 2e-40 Identities = 136/152 (89%) Strand = Plus / Minus Query: 293 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 352 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | || Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645 Query: 353 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 412 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585 Query: 413 agcttgtcggcctccttcttgcgtccggtgag 444 ||||||||||||||||||||||| |||||||| Sbjct: 584 agcttgtcggcctccttcttgcggccggtgag 553
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 147 bits (74), Expect = 4e-32 Identities = 137/158 (86%) Strand = Plus / Minus Query: 294 tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 353 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440 Query: 354 cggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgga 413 |||| | |||||||||||||| || |||||||||| | ||| || ||||||||||| | Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380 Query: 414 gcttgtcggcctccttcttgcgtccggtgagggtgagc 451 ||||||||||||||||||| | |||||||| |||||| Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagc 1342
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 3e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 294 tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 347 |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 292 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 347 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 292 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 347 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 400 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 441 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 353 ccggatacaccgccgaagaagaagcctccggtgaact 389 ||||| ||||| ||||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 aaattcatttatacatagaaga 224 |||||||||||||||||||||| Sbjct: 5987801 aaattcatttatacatagaaga 5987780
>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13, complete sequence Length = 137572 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 aaattcatttatacatagaaga 224 |||||||||||||||||||||| Sbjct: 11198 aaattcatttatacatagaaga 11177
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 aaattcatttatacatagaaga 224 |||||||||||||||||||||| Sbjct: 131038 aaattcatttatacatagaaga 131017
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 atatgtaaaaattcatttata 215 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 cttagtacatgtgtttgtaga 49 ||||||||||||||||||||| Sbjct: 4805996 cttagtacatgtgtttgtaga 4806016 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 atgaggaatatgtaaaaatt 207 |||||||||||||||||||| Sbjct: 24723095 atgaggaatatgtaaaaatt 24723114
>gb|AC145409.3| Macropus eugenii clone ME_KBa-528O13, complete sequence Length = 140426 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 atatgtaaaaattcatttata 215 ||||||||||||||||||||| Sbjct: 41414 atatgtaaaaattcatttata 41394
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 cttagtacatgtgtttgtaga 49 ||||||||||||||||||||| Sbjct: 50645 cttagtacatgtgtttgtaga 50665
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 attatgaggaatatgtaaaa 204 |||||||||||||||||||| Sbjct: 1463464 attatgaggaatatgtaaaa 1463483
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 attatgaggaatatgtaaaa 204 |||||||||||||||||||| Sbjct: 1439128 attatgaggaatatgtaaaa 1439147
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 attatgaggaatatgtaaaa 204 |||||||||||||||||||| Sbjct: 1439074 attatgaggaatatgtaaaa 1439093
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 taaaaattcatttatacatagaag 223 ||||||||||||||| |||||||| Sbjct: 218092 taaaaattcatttatccatagaag 218069
>gb|AC124513.3| Mus musculus BAC clone RP23-448C3 from chromosome 19, complete sequence Length = 202236 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 taaaaattcatttatacatagaag 223 ||||||||||||||| |||||||| Sbjct: 11868 taaaaattcatttatccatagaag 11845
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 aatctacttgaagaagtatg 311 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 attatgaggaatatgtaaaa 204 |||||||||||||||||||| Sbjct: 1474081 attatgaggaatatgtaaaa 1474100
>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part of the gene for alpha-catenin-like protein (MGC26194) (VR22), complete sequence Length = 163119 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tatgaggaatatgtaaaaat 206 |||||||||||||||||||| Sbjct: 64642 tatgaggaatatgtaaaaat 64661
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ttcggcggtctggagcttgtcggc 423 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 agaggaggaagtatgcccag 346 |||||||||||||||||||| Sbjct: 64984 agaggaggaagtatgcccag 65003
>gb|AC122153.4| Oryctolagus cuniculus clone LB1-9L8, complete sequence Length = 216345 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gaaataagctagtcccaaag 184 |||||||||||||||||||| Sbjct: 196698 gaaataagctagtcccaaag 196679
>emb|CR855302.6| Zebrafish DNA sequence from clone CH211-120A5 in linkage group 3, complete sequence Length = 182196 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 gtacatgtgtttgtagagtttctc 56 |||||||||||||||| ||||||| Sbjct: 50313 gtacatgtgtttgtagggtttctc 50290
>gb|AC084880.12| Homo sapiens 12 BAC RP11-64B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110001 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aagagagtgttgctaggagg 100 |||||||||||||||||||| Sbjct: 15284 aagagagtgttgctaggagg 15265
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 attaatctacttgaagaagt 308 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gaaataagctagtcccaaag 184 |||||||||||||||||||| Sbjct: 437714 gaaataagctagtcccaaag 437695
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttatgaggaatatgtaaaaa 205 |||||||||||||||||||| Sbjct: 4009297 ttatgaggaatatgtaaaaa 4009316
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 aggcggcgcagcgacgagacggcg 131 |||||||||||||||| ||||||| Sbjct: 3819765 aggcggcgcagcgacgggacggcg 3819788
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 atgaggaatatgtaaaaatt 207 |||||||||||||||||||| Sbjct: 91672 atgaggaatatgtaaaaatt 91691
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttatgaggaatatgtaaaaa 205 |||||||||||||||||||| Sbjct: 3949710 ttatgaggaatatgtaaaaa 3949729
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 attatgaggaatatgtaaaa 204 |||||||||||||||||||| Sbjct: 1439005 attatgaggaatatgtaaaa 1439024
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tcgtacatgcatgccaccta 289 |||||||||||||||||||| Sbjct: 81350 tcgtacatgcatgccaccta 81369
>dbj|AP004505.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT10E18, TM0035, complete sequence Length = 106041 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tgtgttcttgagagaagaag 83 |||||||||||||||||||| Sbjct: 57634 tgtgttcttgagagaagaag 57615
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 aatctacttgaagaagtatg 311 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780
>emb|AL672067.5| Mouse DNA sequence from clone RP23-5P1 on chromosome X, complete sequence Length = 225196 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 taagctagtcccaaagatta 188 |||||||||||||||||||| Sbjct: 122400 taagctagtcccaaagatta 122381 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,504,037 Number of Sequences: 3902068 Number of extensions: 4504037 Number of successful extensions: 88172 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87586 Number of HSP's gapped (non-prelim): 585 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
