ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC040225.1| Homo sapiens cDNA clone IMAGE:5196381, partial cds 176 2e-41
2gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb044... 86 7e-14
3gb|AY104409.1| Zea mays PCO124784 mRNA sequence 86 7e-14
4emb|AJ242802.1|SST242802 Sporobolus stapfianus mRNA for putative... 76 6e-11
5gb|AC115028.17| Mus musculus chromosome 5, clone RP24-245G22, co... 42 0.88
6gb|AC121843.3| Mus musculus BAC clone RP24-80P19 from chromosome... 42 0.88
7gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosom... 40 3.5
8gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom... 40 3.5
9emb|X62517.1|SSNDHAIGE Synechocystis sp.PCC6803 ndhA, ndhI, ndhG... 40 3.5
10dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 3.5
11gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complet... 40 3.5
12gb|AC151976.3| Mus musculus BAC clone RP24-446O20 from 10, compl... 40 3.5
13gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, comple... 40 3.5 
>gb|BC040225.1| Homo sapiens cDNA clone IMAGE:5196381, partial cds
          Length = 582

 Score =  176 bits (89), Expect = 2e-41
 Identities = 104/110 (94%)
 Strand = Plus / Minus

                                                                       
Query: 156 tagtcatcggccctgacgacgaagttctccttgcgctcgtggaactngncggtgcgggtg 215
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 309 tagtcatcggccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtg 250

                                                             
Query: 216 ttgatgtcctcctcgagcctgctctngcgcaccttgaagtggccggagcc 265
           |||||||||||||| ||||| |||| |||||||| |||||||||||||||
Sbjct: 249 ttgatgtcctcctccagcctactctcgcgcacctcgaagtggccggagcc 200



 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatttaagcgatgcacacgcgcacgacaggagctgatagccgccaaacacgcacgcct 60
           |||||||||||| ||||| |||||||||  || |||||||||||||||||||||||||||
Sbjct: 462 cttatttaagcgctgcacgcgcgcacgatcggggctgatagccgccaaacacgcacgcct 403

                                              
Query: 61  gcatacgctatacgaccgtgcgcagcatcacacat 95
           |||||||||||||||| ||||||| ||||||||||
Sbjct: 402 gcatacgctatacgactgtgcgcaacatcacacat 368
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>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 165   gccctgacgacgaagttctccttgcgctcgtggaactngncggtgcgggtgttgatgtcc 224
             |||||| ||| |||| ||||| |||||||||||| || | |||||| |||||||||||||
Sbjct: 67870 gccctggcgaggaagctctccctgcgctcgtggacctcgccggtgcaggtgttgatgtcc 67811

                                     
Query: 225   tcctcgagcctgctctngcgcacc 248
             ||||||| |||| ||| |||||||
Sbjct: 67810 tcctcgaccctggtctcgcgcacc 67787
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>gb|AY104409.1| Zea mays PCO124784 mRNA sequence
          Length = 553

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                       
Query: 165 gccctgacgacgaagttctccttgcgctcgtggaactngncggtgcgggtgttgatgtcc 224
           |||||| ||| |||| ||||| |||||||||||| || | |||||| |||||||||||||
Sbjct: 353 gccctggcgaggaagctctccctgcgctcgtggacctcgccggtgcaggtgttgatgtcc 294

                                   
Query: 225 tcctcgagcctgctctngcgcacc 248
           ||||||| |||| ||| |||||||
Sbjct: 293 tcctcgaccctggtctcgcgcacc 270
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>emb|AJ242802.1|SST242802 Sporobolus stapfianus mRNA for putative glycine-rich protein
          Length = 562

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 86/102 (84%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                       
Query: 165 gccctgacgacgaagttctccttgcgctcgtggaactngncggtgcgggtgttgatgtcc 224
           |||||||| | || ||||||||||||||||||||||| | ||||||| ||||||||||| 
Sbjct: 347 gccctgacaaggacgttctccttgcgctcgtggaactcgccggtgcgcgtgttgatgtc- 289

                                                     
Query: 225 tcctcgagcctgctctngcgcaccttgaagtggccggagccg 266
             ||| | | || ||| |||| ||| ||||||||||||||||
Sbjct: 288 -tctcaaacttggtctcgcgcgcctggaagtggccggagccg 248
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>gb|AC115028.17| Mus musculus chromosome 5, clone RP24-245G22, complete sequence
          Length = 188423

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   cacacatgcttacatgaatac 109
            |||||||||||||||||||||
Sbjct: 9692 cacacatgcttacatgaatac 9672
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>gb|AC121843.3| Mus musculus BAC clone RP24-80P19 from chromosome 5, complete sequence
          Length = 196947

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     cacacatgcttacatgaatac 109
              |||||||||||||||||||||
Sbjct: 132591 cacacatgcttacatgaatac 132571
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>gb|AC134561.5| Mus musculus BAC clone RP24-111C16 from chromosome 8, complete sequence
          Length = 179978

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     cacacatgcttacatgaatacaca 112
              ||||||||| ||||||||||||||
Sbjct: 171683 cacacatgcatacatgaatacaca 171660
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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete
             sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    cacacatgcttacatgaatacaca 112
             ||||||||| ||||||||||||||
Sbjct: 69741 cacacatgcatacatgaatacaca 69764
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>emb|X62517.1|SSNDHAIGE Synechocystis sp.PCC6803 ndhA, ndhI, ndhG & ndhE genes for
            NADH-dehydrogenase subunits
          Length = 3229

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  cggtgcgggtgttgatgtcc 224
            ||||||||||||||||||||
Sbjct: 2784 cggtgcgggtgttgatgtcc 2803
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     cggtgcgggtgttgatgtcc 224
               ||||||||||||||||||||
Sbjct: 3267470 cggtgcgggtgttgatgtcc 3267451
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>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence
          Length = 203896

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     cacacatgcttacatgaatacaca 112
              |||||||||||||||| |||||||
Sbjct: 132113 cacacatgcttacatgtatacaca 132090
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>gb|AC151976.3| Mus musculus BAC clone RP24-446O20 from 10, complete sequence
          Length = 174449

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     cacacatgcttacatgaatacaca 112
              ||||||||| ||||||||||||||
Sbjct: 137200 cacacatgcatacatgaatacaca 137223
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>gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, complete sequence
          Length = 163028

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     cacacatgcttacatgaatacaca 112
              ||||||||| ||||||||||||||
Sbjct: 135996 cacacatgcatacatgaatacaca 136019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,214,215
Number of Sequences: 3902068
Number of extensions: 1214215
Number of successful extensions: 20380
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20362
Number of HSP's gapped (non-prelim): 18
length of query: 267
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 245
effective length of database: 17,147,199,772
effective search space: 4201063944140
effective search space used: 4201063944140
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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