ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35l18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1170 bits (590), Expect = 0.0 Identities = 631/638 (98%), Gaps = 5/638 (0%) Strand = Plus / Minus Query: 1 aatcgcttggatgcgatgcggacttag-gtaggtaaa-catcagatattaaaagtggcat 58 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 1651 aatcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcat 1592 Query: 59 gcttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttctt 117 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1591 gcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttctt 1532 Query: 118 ggcattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttac 176 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1531 ggcattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttac 1472 Query: 177 ctcctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaagg 235 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1471 ctcctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaagg 1412 Query: 236 aaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgt 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1411 aaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgt 1352 Query: 296 cagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactcta 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1351 cagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactcta 1292 Query: 356 gcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttca 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1291 gcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttca 1232 Query: 416 ccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgt 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1231 ccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgt 1172 Query: 476 cgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcga 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1171 cgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcga 1112 Query: 536 cgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacac 595 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1111 cgatctttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagacac 1052 Query: 596 cgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||||||||||| Sbjct: 1051 cgatacggtcgtcacgggtgggagcccagtagaacttc 1014
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 959 bits (484), Expect = 0.0 Identities = 604/640 (94%), Gaps = 8/640 (1%) Strand = Plus / Minus Query: 1 aatcgcttggatgcgatgcgg-acttaggt----agg--taaacatcagatattaaaagt 53 ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||| | Sbjct: 722 aatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatatt-aaatt 664 Query: 54 ggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagt 113 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 663 ggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagt 604 Query: 114 tcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctt 173 |||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||| Sbjct: 603 tcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctt 544 Query: 174 tacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaa 233 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 543 tacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaa 484 Query: 234 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 293 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 424 Query: 294 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 364 Query: 354 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 413 |||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 363 tagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgagtt 304 Query: 414 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 473 ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| || Sbjct: 303 caccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcgtc 244 Query: 474 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 533 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 243 gtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgggaaggtgtc 184 Query: 534 gacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagac 593 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 183 gacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacccttgcagac 124 Query: 594 accgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||| |||||||||||||||||||||||| Sbjct: 123 accgatacggtcgtcgcgggtgggagcccagtagaacttc 84
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 959 bits (484), Expect = 0.0 Identities = 604/640 (94%), Gaps = 8/640 (1%) Strand = Plus / Minus Query: 1 aatcgcttggatgcgatgcgg-acttaggt----agg--taaacatcagatattaaaagt 53 ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||| | Sbjct: 1572 aatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatatt-aaatt 1514 Query: 54 ggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagt 113 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 1513 ggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagt 1454 Query: 114 tcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctt 173 |||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||| Sbjct: 1453 tcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctt 1394 Query: 174 tacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaa 233 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1393 tacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaa 1334 Query: 234 ggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 293 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 ggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggt 1274 Query: 294 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 gtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 1214 Query: 354 tagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagtt 413 |||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1213 tagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgagtt 1154 Query: 414 caccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatc 473 ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| || Sbjct: 1153 caccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctcgtc 1094 Query: 474 gtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 533 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1093 gtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgggaaggtgtc 1034 Query: 534 gacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagac 593 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1033 gacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacccttgcagac 974 Query: 594 accgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||| |||||||||||||||||||||||| Sbjct: 973 accgatacggtcgtcgcgggtgggagcccagtagaacttc 934
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 795 bits (401), Expect = 0.0 Identities = 407/409 (99%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 867 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 759 Score = 337 bits (170), Expect = 3e-89 Identities = 177/178 (99%), Gaps = 1/178 (0%) Strand = Plus / Minus Query: 1 aatcgcttggatgcgatgcggacttaggtaggtaaa-catcagatattaaaagtggcatg 59 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1342 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 1283 Query: 60 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 1223 Query: 120 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1222 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 783 bits (395), Expect = 0.0 Identities = 538/585 (91%), Gaps = 2/585 (0%) Strand = Plus / Minus Query: 49 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 108 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 109 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 168 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 169 tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 228 ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 409 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 468 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 469 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 528 ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 1109 tcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgggaan 1050 Query: 529 gtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttg 588 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1049 gtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacccttg 990 Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||| ||||||||||| || |||||||| ||||||||||||||| Sbjct: 989 cagacgccgatacggtcctcgcgggtgggcgcccagtagaacttc 945
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 175 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 235 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 295 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 355 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 415 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 475 tcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 341 bits (172), Expect = 2e-90 Identities = 179/180 (99%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 1 aatcgcttggatgcgatgcggacttaggtaggtaaa-catcagatattaaaagtggcatg 59 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 7702 aatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatg 7643 Query: 60 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7642 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 7583 Query: 120 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7582 cattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 248 bits (125), Expect = 2e-62 Identities = 125/125 (100%) Strand = Plus / Minus Query: 509 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 569 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 629 acttc 633 ||||| Sbjct: 6760 acttc 6756 Score = 119 bits (60), Expect = 1e-23 Identities = 153/184 (83%) Strand = Plus / Minus Query: 450 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 510 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 569 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 570 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 630 cttc 633 |||| Sbjct: 3632 cttc 3629 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 361 ttctcgactgtcatctttggctgctcgaa 389 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 557 bits (281), Expect = e-155 Identities = 377/409 (92%) Strand = Plus / Minus Query: 225 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 284 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 285 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 344 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 345 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 404 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 405 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 464 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004 Query: 585 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||| ||||||||||| || |||||||| |||||||| |||||| Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttc 955 Score = 176 bits (89), Expect = 6e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 49 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 108 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 109 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 168 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 169 tcctttacc 177 ||||||||| Sbjct: 1369 tcctttacc 1361
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 203 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 262 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 263 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 323 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 383 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 442 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 443 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 502 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 503 aaaagtc 509 ||||||| Sbjct: 8 aaaagtc 2
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 226 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 285 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 286 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 345 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 346 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 406 cgcgagttcaccagcctcttgccaatgttctc 437 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1443 ccctcctcct 1434
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 118 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 174 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 175 acctcctcct 184 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 224 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 283 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 284 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 343 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 344 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 403 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 404 cccgcgagttcaccagcctcttgccaatgttctc 437 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 167 bits (84), Expect = 6e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 514 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 573 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 574 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 226 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 285 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 286 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 345 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 346 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 405 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 406 cgcgagttcaccagcctcttgccaatgttctc 437 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 161 bits (81), Expect = 3e-36 Identities = 270/333 (81%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 361 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 420 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 421 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 480 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 481 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 540 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 541 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 600 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 601 cggtcgtcacgggtgggagcccagtagaacttc 633 ||||| || |||||||| ||||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttc 910
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 221 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 280 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 281 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 340 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 341 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 400 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 401 cgtcccgcgagttcaccagcctcttgccaatgttctc 437 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 125 bits (63), Expect = 2e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 631 ttc 633 ||| Sbjct: 108808 ttc 108810 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 76 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 135 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 136 accttccggcacggg 150 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 112513 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 221 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 280 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 281 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 340 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 341 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 400 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 401 cgtcccgcgagttcaccagcctcttgccaatgttctc 437 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 125 bits (63), Expect = 2e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 631 ttc 633 ||| Sbjct: 30685 ttc 30687 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 76 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 135 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 136 accttccggcacggg 150 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 34390 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 221 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 280 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 281 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 340 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 341 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 400 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 401 cgtcccgcgagttcaccagcctcttgccaatgttctc 437 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 125 bits (63), Expect = 2e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 631 ttc 633 ||| Sbjct: 28303947 ttc 28303949 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 76 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 135 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 136 accttccggcacggg 150 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 28307652 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 221 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 280 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 281 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 340 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 341 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 400 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 401 cgtcccgcgagttcaccagcctcttgccaatgttctc 437 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 125 bits (63), Expect = 2e-25 Identities = 108/123 (87%) Strand = Plus / Plus Query: 511 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 570 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 571 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 630 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 631 ttc 633 ||| Sbjct: 28286396 ttc 28286398 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 76 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 135 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 136 accttccggcacggg 150 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 28290101 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 503 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 409 gagttcaccagcctcttgccaatgttctc 437 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 222 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 281 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 282 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 341 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 342 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 401 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 402 gtcccgcgagttcaccagcctcttgcc 428 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttc 596 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 68 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 127 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 128 tcggtgcaaccttc 141 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 64 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 123 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 124 ttggtcggtgcaaccttccggcacgggca 152 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 409 gagttcaccagcctcttgcc 428 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttc 790 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 68 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 127 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 128 tcggtgcaaccttc 141 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 119 bits (60), Expect = 1e-23 Identities = 153/184 (83%) Strand = Plus / Minus Query: 450 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 509 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 510 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 569 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 570 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 630 cttc 633 |||| Sbjct: 1063 cttc 1060 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 360 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 361 ttctcgactgtcatctttggctgctcgaa 389 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 222 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 281 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 282 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 341 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 342 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 401 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 402 gtcccgcgagttcaccagcctctt 425 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttc 897 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 68 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 127 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 128 tcggtgcaaccttc 141 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 229 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 288 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 289 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 348 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 349 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 408 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 409 gagttcaccagcctctt 425 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 91.7 bits (46), Expect = 3e-15 Identities = 145/178 (81%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 516 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 575 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttc 760 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 68 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 127 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 128 tcggtgcaaccttc 141 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760 Score = 87.7 bits (44), Expect = 4e-14 Identities = 137/168 (81%) Strand = Plus / Minus Query: 466 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 525 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 526 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 585 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||| ||||| ||||| || |||||||| ||||||||||||||| Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttc 516
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 79.8 bits (40), Expect = 1e-11 Identities = 136/168 (80%) Strand = Plus / Minus Query: 466 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 525 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 526 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 585 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||| ||||| ||||| || |||||||| ||||||||||||||| Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttc 911
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 230 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 289 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 290 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 349 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 350 actctagcagcttctcgactgtcatctttggctgctcgaa 389 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||| ||||||||||| ||||| ||||| || |||||||| ||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttc 911
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 1077
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 1077
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 1106
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 988
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 91.7 bits (46), Expect = 3e-15 Identities = 115/138 (83%) Strand = Plus / Minus Query: 496 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 555 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 556 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 615 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 616 ggagcccagtagaacttc 633 |||||||||||||||||| Sbjct: 1044 ggagcccagtagaacttc 1027
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 903
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 14211
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 991
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 980
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 988
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 991
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 1106
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttc 3072
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 532 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 591 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 592 acaccgatacggtcgtcacgggtgggagcccagtagaactt 632 || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 458
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 247 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 306 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 307 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 362 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 58 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 117 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 118 ggcattttggtcggtgcaaccttccggcacgggca 152 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 532 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 591 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 592 acaccgatacggtcgtcacgggtgggagcccagtagaactt 632 || ||||| ||||| || |||||||| |||||||||||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaactt 466
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttc 2769
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttc 1141 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Minus Query: 469 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 528 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 529 gtgtcgacga 538 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 476
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 478
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 476
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 575 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 632 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 478
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 492 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 533 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 562 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 621 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 622 cagtagaa 629 |||||||| Sbjct: 983 cagtagaa 976 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 250 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 299 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 63.9 bits (32), Expect = 6e-07 Identities = 107/132 (81%) Strand = Plus / Minus Query: 465 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 524 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 525 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 584 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 585 cttgcagacacc 596 |||||| ||||| Sbjct: 342 cttgcaaacacc 331
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 492 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 545 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 532 tc 533 || Sbjct: 2663 tc 2662
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 472 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 531 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 532 tc 533 || Sbjct: 973 tc 972
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 561 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 620 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 621 ccagtagaa 629 ||||||||| Sbjct: 188 ccagtagaa 180
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 258 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 317 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 318 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 377 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 378 tggctgctcgaa 389 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 587 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 633 ||||||| || ||||| || || |||||||||||||||||||||||| Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttc 988 Score = 44.1 bits (22), Expect = 0.55 Identities = 64/78 (82%) Strand = Plus / Minus Query: 456 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 515 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 516 ttgtcctgggaaggtgtc 533 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 455 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 514 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 515 attgtcctgggaaggtgtcgac 536 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 573 ctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 617 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggg 1817 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 301 agctgcacacgcttgacattgtcctgctc 329 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 48.1 bits (24), Expect = 0.035 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 534 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 535 acga 538 |||| Sbjct: 884 acga 881
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Minus Query: 586 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||||||||||| |||||||| || | |||||| ||||||||||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaa 976 Score = 40.1 bits (20), Expect = 8.6 Identities = 68/84 (80%) Strand = Plus / Minus Query: 259 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 318 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 319 ttgtcctgctcctggacgagcatg 342 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 48.1 bits (24), Expect = 0.035 Identities = 75/92 (81%) Strand = Plus / Minus Query: 454 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 513 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 514 gattgtcctgggaaggtgtcgacgatcttgac 545 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 48.1 bits (24), Expect = 0.035 Identities = 54/64 (84%) Strand = Plus / Minus Query: 475 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 534 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 535 acga 538 |||| Sbjct: 885 acga 882 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 567 gtcggtctggaagatacccttgcagacaccgatacggtcgtc 608 ||||||| ||| ||||| ||||| ||||||||||||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtc 812
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 587 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 |||||||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaa 101
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 496 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 545 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 taaacatcagatattaaaagtg 54 |||||||||||||||||||||| Sbjct: 3040441 taaacatcagatattaaaagtg 3040420
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 catcacccagagctgcctggct 284 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 589 cagacaccgatacggtcgtcacgggt 614 ||||||||||||||||| |||||||| Sbjct: 1016 cagacaccgatacggtcttcacgggt 991
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaa 819
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Minus Query: 576 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 629 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaa 992
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 taaacatcagatattaaaagtg 54 |||||||||||||||||||||| Sbjct: 3040386 taaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 taaacatcagatattaaaagtg 54 |||||||||||||||||||||| Sbjct: 114402 taaacatcagatattaaaagtg 114423
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 gggaaggtgtcgacgatcttg 543 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 atgcagcaagagatggtgggt 205 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 573 ctggaagatacccttgcagacacc 596 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cctttacctcctcctatgca 189 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cctttacctcctcctatgca 189 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cctttacctcctcctatgca 189 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gtcagcaagctgcacacgct 313 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 ttgacgacagactcgtcact 560 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcagatattaaaagtggcat 58 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcagatattaaaagtggcat 58 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcagatattaaaagtggcat 58 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ttgacattgtcctgctcctg 332 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 67 ggtgtaaaggcagctgccgtcgtcgctc 94 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cctttacctcctcctatgca 189 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tggcatgcttaaaaggtgta 72 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 acaccgatacggtcgtcacg 611 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ttgacattgtcctgctcctg 332 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 catcacccagagctgcctggctca 286 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 cttgctgtgctcctttacctcctc 182 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cctttacctcctcctatgca 189 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 atcagatattaaaagtggcatgct 61 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,980,764 Number of Sequences: 3902068 Number of extensions: 3980764 Number of successful extensions: 72118 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71658 Number of HSP's gapped (non-prelim): 393 length of query: 633 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 610 effective length of database: 17,143,297,704 effective search space: 10457411599440 effective search space used: 10457411599440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
