ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35l03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2925 Score = 311 bits (157), Expect = 2e-81 Identities = 371/443 (83%), Gaps = 6/443 (1%) Strand = Plus / Minus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 698 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 639 Query: 312 ctttcacttccactg------gaactgtggcatctcctccatatgtgctgccaaagggtc 365 ||||| ||||||||| ||||||||||||| ||||| | |||||||||||| || Sbjct: 638 ctttcgcttccactgccactggaactgtggcatcgtctccaaacatgctgccaaaggttc 579 Query: 366 ttaagttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacac 425 |||||||||||||| | ||| |||||||||| |||||||||||||| ||||| | |||| Sbjct: 578 ttaagttcattcttacgtataggcttcactagaaagtcaactgctccttttgacaaacac 519 Query: 426 ttaaagactgtactcattgagtcattcttagacatcatgatcacaggaatgcccttacaa 485 ||||||||||||| ||||||||||||| ||||||||| ||||| ||||| |||| ||| Sbjct: 518 ttaaagactgtacccattgagtcattcgaagacatcataatcacgggaatatccttgcaa 459 Query: 486 atactgtgactcgtgatcttactgagcagaccaatgccagatagacaaggcatggcgacc 545 || |||| || ||||||||||| ||||||||||||||||| |||| ||||| ||||| Sbjct: 458 attttgtggcttgtgatcttactaagcagaccaatgccagacagacgtggcattacgacc 399 Query: 546 tcagttaatacaaggtcaatacggttttgcacatcttcaagatattgccatgcatccaat 605 || || |||||||||||||| ||||||||| |||||||||| |||||||||||| | Sbjct: 398 tcggtcaatacaaggtcaatgtggttttgcagatcttcaagacattgccatgcatgtagc 339 Query: 606 ccattctcagcagagataacttcatagccacacttacngagcagagcacggacaacatgt 665 ||||| ||||||| |||||||||||| | |||||||| ||||| || | ||| || || Sbjct: 338 ccattttcagcagggataacttcataacaacacttacgaagcagtgcgctgaccacctga 279 Query: 666 cgggtacagtcatcgttctccac 688 |||||| ||||||| |||||||| Sbjct: 278 cgggtagagtcatcattctccac 256 Score = 103 bits (52), Expect = 8e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 998 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 939 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 938 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 879 Query: 147 gaactctg 154 |||||||| Sbjct: 878 gaactctg 871 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 806 tgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 757
>dbj|AB189043.1| Oryza sativa (indica cultivar-group) OsPRR73 mRNA for pseudo-response regulator 73, complete cds Length = 2304 Score = 311 bits (157), Expect = 2e-81 Identities = 371/443 (83%), Gaps = 6/443 (1%) Strand = Plus / Minus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 698 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 639 Query: 312 ctttcacttccactg------gaactgtggcatctcctccatatgtgctgccaaagggtc 365 ||||| ||||||||| ||||||||||||| ||||| | |||||||||||| || Sbjct: 638 ctttcgcttccactgccactggaactgtggcatcgtctccaaacatgctgccaaaggttc 579 Query: 366 ttaagttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacac 425 |||||||||||||| | ||| |||||||||| |||||||||||||| ||||| | |||| Sbjct: 578 ttaagttcattcttacgtataggcttcactagaaagtcaactgctccttttgacaaacac 519 Query: 426 ttaaagactgtactcattgagtcattcttagacatcatgatcacaggaatgcccttacaa 485 ||||||||||||| ||||||||||||| ||||||||| ||||| ||||| |||| ||| Sbjct: 518 ttaaagactgtacccattgagtcattcgaagacatcataatcacgggaatatccttgcaa 459 Query: 486 atactgtgactcgtgatcttactgagcagaccaatgccagatagacaaggcatggcgacc 545 || |||| || ||||||||||| ||||||||||||||||| |||| ||||| ||||| Sbjct: 458 attttgtggcttgtgatcttactaagcagaccaatgccagacagacgtggcattacgacc 399 Query: 546 tcagttaatacaaggtcaatacggttttgcacatcttcaagatattgccatgcatccaat 605 || || |||||||||||||| ||||||||| |||||||||| |||||||||||| | Sbjct: 398 tcggtcaatacaaggtcaatgtggttttgcagatcttcaagacattgccatgcatgtagc 339 Query: 606 ccattctcagcagagataacttcatagccacacttacngagcagagcacggacaacatgt 665 ||||| ||||||| |||||||||||| | |||||||| ||||| || | ||| || || Sbjct: 338 ccattttcagcagggataacttcataacaacacttacgaagcagtgcgctgaccacctga 279 Query: 666 cgggtacagtcatcgttctccac 688 |||||| ||||||| |||||||| Sbjct: 278 cgggtagagtcatcattctccac 256 Score = 167 bits (84), Expect = 6e-38 Identities = 154/176 (87%), Gaps = 1/176 (0%) Strand = Plus / Minus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 932 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 873 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 872 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 813 Query: 147 gaactctgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 812 gaactttgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 757
>dbj|AB189040.1| Oryza sativa (japonica cultivar-group) OsPRR73 mRNA for pseudo-response regulator 73, complete cds Length = 2304 Score = 311 bits (157), Expect = 2e-81 Identities = 371/443 (83%), Gaps = 6/443 (1%) Strand = Plus / Minus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 698 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 639 Query: 312 ctttcacttccactg------gaactgtggcatctcctccatatgtgctgccaaagggtc 365 ||||| ||||||||| ||||||||||||| ||||| | |||||||||||| || Sbjct: 638 ctttcgcttccactgccactggaactgtggcatcgtctccaaacatgctgccaaaggttc 579 Query: 366 ttaagttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacac 425 |||||||||||||| | ||| |||||||||| |||||||||||||| ||||| | |||| Sbjct: 578 ttaagttcattcttacgtataggcttcactagaaagtcaactgctccttttgacaaacac 519 Query: 426 ttaaagactgtactcattgagtcattcttagacatcatgatcacaggaatgcccttacaa 485 ||||||||||||| ||||||||||||| ||||||||| ||||| ||||| |||| ||| Sbjct: 518 ttaaagactgtacccattgagtcattcgaagacatcataatcacgggaatatccttgcaa 459 Query: 486 atactgtgactcgtgatcttactgagcagaccaatgccagatagacaaggcatggcgacc 545 || |||| || ||||||||||| ||||||||||||||||| |||| ||||| ||||| Sbjct: 458 attttgtggcttgtgatcttactaagcagaccaatgccagacagacgtggcattacgacc 399 Query: 546 tcagttaatacaaggtcaatacggttttgcacatcttcaagatattgccatgcatccaat 605 || || |||||||||||||| ||||||||| |||||||||| |||||||||||| | Sbjct: 398 tcggtcaatacaaggtcaatgtggttttgcagatcttcaagacattgccatgcatgtagc 339 Query: 606 ccattctcagcagagataacttcatagccacacttacngagcagagcacggacaacatgt 665 ||||| ||||||| |||||||||||| | |||||||| ||||| || | ||| || || Sbjct: 338 ccattttcagcagggataacttcataacaacacttacgaagcagtgcgctgaccacctga 279 Query: 666 cgggtacagtcatcgttctccac 688 |||||| ||||||| |||||||| Sbjct: 278 cgggtagagtcatcattctccac 256 Score = 167 bits (84), Expect = 6e-38 Identities = 154/176 (87%), Gaps = 1/176 (0%) Strand = Plus / Minus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 932 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 873 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 872 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 813 Query: 147 gaactctgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 812 gaactttgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 757
>dbj|AK121136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E22, full insert sequence Length = 3875 Score = 303 bits (153), Expect = 4e-79 Identities = 370/443 (83%), Gaps = 6/443 (1%) Strand = Plus / Minus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 1386 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 1327 Query: 312 ctttcacttccactg------gaactgtggcatctcctccatatgtgctgccaaagggtc 365 ||||| ||||||||| ||||||||||||| ||||| | |||||||||||| || Sbjct: 1326 ctttcgcttccactgccactggaactgtggcatcgtctccaaacatgctgccaaaggttc 1267 Query: 366 ttaagttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacac 425 |||||||||||||| | ||| |||| ||||| |||||||||||||| ||||| | |||| Sbjct: 1266 ttaagttcattcttacgtataggctccactagaaagtcaactgctccttttgacaaacac 1207 Query: 426 ttaaagactgtactcattgagtcattcttagacatcatgatcacaggaatgcccttacaa 485 ||||||||||||| ||||||||||||| ||||||||| ||||| ||||| |||| ||| Sbjct: 1206 ttaaagactgtacccattgagtcattcgaagacatcataatcacgggaatatccttgcaa 1147 Query: 486 atactgtgactcgtgatcttactgagcagaccaatgccagatagacaaggcatggcgacc 545 || |||| || ||||||||||| ||||||||||||||||| |||| ||||| ||||| Sbjct: 1146 attttgtggcttgtgatcttactaagcagaccaatgccagacagacgtggcattacgacc 1087 Query: 546 tcagttaatacaaggtcaatacggttttgcacatcttcaagatattgccatgcatccaat 605 || || |||||||||||||| ||||||||| |||||||||| |||||||||||| | Sbjct: 1086 tcggtcaatacaaggtcaatgtggttttgcagatcttcaagacattgccatgcatgtagc 1027 Query: 606 ccattctcagcagagataacttcatagccacacttacngagcagagcacggacaacatgt 665 ||||| ||||||| |||||||||||| | |||||||| ||||| || | ||| || || Sbjct: 1026 ccattttcagcagggataacttcataacaacacttacgaagcagtgcgctgaccacctga 967 Query: 666 cgggtacagtcatcgttctccac 688 |||||| ||||||| |||||||| Sbjct: 966 cgggtagagtcatcattctccac 944 Score = 159 bits (80), Expect = 1e-35 Identities = 153/176 (86%), Gaps = 1/176 (0%) Strand = Plus / Minus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 1620 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 1561 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| |||||| |||| |||||||| |||||| Sbjct: 1560 gatggttgatcaggagacatttgttgtgggctgtcaatcaccactgcacgctttgtccat 1501 Query: 147 gaactctgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 1500 gaactttgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 1445
>dbj|AK099526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030P09, full insert sequence Length = 1121 Score = 167 bits (84), Expect = 6e-38 Identities = 154/176 (87%), Gaps = 1/176 (0%) Strand = Plus / Minus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 403 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 344 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 343 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 284 Query: 147 gaactctgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 283 gaactttgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 228 Score = 119 bits (60), Expect = 1e-23 Identities = 140/167 (83%), Gaps = 6/167 (3%) Strand = Plus / Minus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 169 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 110 Query: 312 ctttcacttccactg------gaactgtggcatctcctccatatgtgctgccaaagggtc 365 ||||| ||||||||| ||||||||||||| ||||| | |||||||||||| || Sbjct: 109 ctttcgcttccactgccactggaactgtggcatcgtctccaaacatgctgccaaaggttc 50 Query: 366 ttaagttcattcttccttatcggcttcactaagaagtcaactgctcc 412 |||||||||||||| | ||| |||||||||| |||||||||||||| Sbjct: 49 ttaagttcattcttacgtataggcttcactagaaagtcaactgctcc 3
>gb|AY109518.1| Zea mays CL18439_1 mRNA sequence Length = 2089 Score = 141 bits (71), Expect = 3e-30 Identities = 141/163 (86%), Gaps = 1/163 (0%) Strand = Plus / Minus Query: 31 ctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatctgat 89 |||| |||||||||||| |||||||| ||||||||||| ||||||||||||| ||| | Sbjct: 182 ctgcatatctctgatctagggtgaattacttgtgcacatgtactatcaggtggatcaact 123 Query: 90 agatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccatgaa 149 || || || | ||| | | |||||||||| |||||||||||||||||||| |||||||| Sbjct: 122 agttgatcgggagatataggttgtgggctgtcaatctccacagcacgctttgtccatgag 63 Query: 150 ctctgagtgccactgccattatcactgccatccctagcattgg 192 || ||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 62 ctttgagtaccactgccattgtcacttccatccctagcattgg 20
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 3e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 329 actgtggcatctcctccatatgtgctgccaaagggtcttaagttcattcttccttatcgg 388 ||||||||||| ||||| | |||||||||||| |||||||||||||||| | ||| || Sbjct: 9735950 actgtggcatcgtctccaaacatgctgccaaaggttcttaagttcattcttacgtatagg 9736009 Query: 389 cttcactaagaagtcaactgctccctttgatagacacttaaagactgtactcattgagtc 448 |||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||| Sbjct: 9736010 cttcactagaaagtcaactgctccttttgacaaacacttaaagactgtacccattgagtc 9736069 Query: 449 attcttagacatca 462 |||| |||||||| Sbjct: 9736070 attcgaagacatca 9736083 Score = 115 bits (58), Expect = 2e-22 Identities = 136/162 (83%) Strand = Plus / Plus Query: 465 atcacaggaatgcccttacaaatactgtgactcgtgatcttactgagcagaccaatgcca 524 ||||| ||||| |||| ||||| |||| || ||||||||||| ||||||||||||||| Sbjct: 9736197 atcacgggaatatccttgcaaattttgtggcttgtgatcttactaagcagaccaatgcca 9736256 Query: 525 gatagacaaggcatggcgacctcagttaatacaaggtcaatacggttttgcacatcttca 584 || |||| ||||| ||||||| || |||||||||||||| ||||||||| ||||||| Sbjct: 9736257 gacagacgtggcattacgacctcggtcaatacaaggtcaatgtggttttgcagatcttca 9736316 Query: 585 agatattgccatgcatccaatccattctcagcagagataact 626 ||| |||||||||||| | ||||| ||||||| ||||||| Sbjct: 9736317 agacattgccatgcatgtagcccattttcagcagggataact 9736358 Score = 103 bits (52), Expect = 8e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 9734074 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 9734133 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 9734134 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 9734193 Query: 147 gaactctg 154 |||||||| Sbjct: 9734194 gaactctg 9734201 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 153 tgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 9735610 tgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 9735659 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 9735718 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 9735777 Query: 312 ctttcacttccactg 326 ||||| ||||||||| Sbjct: 9735778 ctttcgcttccactg 9735792
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 131 bits (66), Expect = 3e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 329 actgtggcatctcctccatatgtgctgccaaagggtcttaagttcattcttccttatcgg 388 ||||||||||| ||||| | |||||||||||| |||||||||||||||| | ||| || Sbjct: 156849 actgtggcatcgtctccaaacatgctgccaaaggttcttaagttcattcttacgtatagg 156908 Query: 389 cttcactaagaagtcaactgctccctttgatagacacttaaagactgtactcattgagtc 448 |||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||| Sbjct: 156909 cttcactagaaagtcaactgctccttttgacaaacacttaaagactgtacccattgagtc 156968 Query: 449 attcttagacatca 462 |||| |||||||| Sbjct: 156969 attcgaagacatca 156982 Score = 115 bits (58), Expect = 2e-22 Identities = 136/162 (83%) Strand = Plus / Plus Query: 465 atcacaggaatgcccttacaaatactgtgactcgtgatcttactgagcagaccaatgcca 524 ||||| ||||| |||| ||||| |||| || ||||||||||| ||||||||||||||| Sbjct: 157096 atcacgggaatatccttgcaaattttgtggcttgtgatcttactaagcagaccaatgcca 157155 Query: 525 gatagacaaggcatggcgacctcagttaatacaaggtcaatacggttttgcacatcttca 584 || |||| ||||| ||||||| || |||||||||||||| ||||||||| ||||||| Sbjct: 157156 gacagacgtggcattacgacctcggtcaatacaaggtcaatgtggttttgcagatcttca 157215 Query: 585 agatattgccatgcatccaatccattctcagcagagataact 626 ||| |||||||||||| | ||||| ||||||| ||||||| Sbjct: 157216 agacattgccatgcatgtagcccattttcagcagggataact 157257 Score = 103 bits (52), Expect = 8e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 154973 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 155032 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 155033 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 155092 Query: 147 gaactctg 154 |||||||| Sbjct: 155093 gaactctg 155100 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 153 tgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 156509 tgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 156558 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 156617 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 156676 Query: 312 ctttcacttccactg 326 ||||| ||||||||| Sbjct: 156677 ctttcgcttccactg 156691
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 3e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 329 actgtggcatctcctccatatgtgctgccaaagggtcttaagttcattcttccttatcgg 388 ||||||||||| ||||| | |||||||||||| |||||||||||||||| | ||| || Sbjct: 9734071 actgtggcatcgtctccaaacatgctgccaaaggttcttaagttcattcttacgtatagg 9734130 Query: 389 cttcactaagaagtcaactgctccctttgatagacacttaaagactgtactcattgagtc 448 |||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||| Sbjct: 9734131 cttcactagaaagtcaactgctccttttgacaaacacttaaagactgtacccattgagtc 9734190 Query: 449 attcttagacatca 462 |||| |||||||| Sbjct: 9734191 attcgaagacatca 9734204 Score = 115 bits (58), Expect = 2e-22 Identities = 136/162 (83%) Strand = Plus / Plus Query: 465 atcacaggaatgcccttacaaatactgtgactcgtgatcttactgagcagaccaatgcca 524 ||||| ||||| |||| ||||| |||| || ||||||||||| ||||||||||||||| Sbjct: 9734318 atcacgggaatatccttgcaaattttgtggcttgtgatcttactaagcagaccaatgcca 9734377 Query: 525 gatagacaaggcatggcgacctcagttaatacaaggtcaatacggttttgcacatcttca 584 || |||| ||||| ||||||| || |||||||||||||| ||||||||| ||||||| Sbjct: 9734378 gacagacgtggcattacgacctcggtcaatacaaggtcaatgtggttttgcagatcttca 9734437 Query: 585 agatattgccatgcatccaatccattctcagcagagataact 626 ||| |||||||||||| | ||||| ||||||| ||||||| Sbjct: 9734438 agacattgccatgcatgtagcccattttcagcagggataact 9734479 Score = 103 bits (52), Expect = 8e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 28 ttgctgcctatctctgatctggggtgaat-acttgtgcacaagtactatcaggtgaatct 86 ||||||| |||||||||| |||||||||| ||||| |||||||||||||| ||| ||| Sbjct: 9732195 ttgctgcatatctctgatgtggggtgaattacttgcgcacaagtactatctggtagatcg 9732254 Query: 87 gatagatggtcagaagacacaagttgtgggctatcaatctccacagcacgcttcgtccat 146 ||| | || |||| ||||| |||||||||| ||||||||||| |||||||| |||||| Sbjct: 9732255 gatggttgatcaggagacatttgttgtgggctgtcaatctccactgcacgctttgtccat 9732314 Query: 147 gaactctg 154 |||||||| Sbjct: 9732315 gaactctg 9732322 Score = 75.8 bits (38), Expect = 2e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 153 tgagtgccactgccattatcactgccatccctagcattgggcccaacact 202 ||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct: 9733731 tgagtgccactgccattatcactgccatccctagcgttgtgtccaacact 9733780 Score = 69.9 bits (35), Expect = 1e-08 Identities = 65/75 (86%) Strand = Plus / Plus Query: 252 ctgtttttcgcatattcatcaccagtctttggtttggaacacttttgtatatggatgcca 311 ||||| ||| ||||||||||| || ||||||||||| |||||||||| | |||||||| Sbjct: 9733839 ctgttattctcatattcatcatcaacctttggtttggtacacttttgtgttcggatgcca 9733898 Query: 312 ctttcacttccactg 326 ||||| ||||||||| Sbjct: 9733899 ctttcgcttccactg 9733913
>ref|XM_479630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3312 Score = 115 bits (58), Expect = 2e-22 Identities = 294/373 (78%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 1096 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 1037 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 1036 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 977 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| |||||||||||||| || |||||||| | ||||||||| ||||||| Sbjct: 976 tacgtatgggcttgactaagaagtcaacagcgccctttgacaaacacttaaaaactgtac 917 Query: 439 tcattgagtcattcttagacatcatgatcacaggaatgcccttacaaatactgtgactcg 498 ||| | ||||| ||||||||| ||||| ||||| ||| |||||| |||| || Sbjct: 916 ccatagcatcatttgaagacatcataatcactggaatattcttgcaaatattgtggttca 857 Query: 499 tgatcttactgagcagaccaatgccagatagacaaggcatggcgacctcagttaatacaa 558 ||||| |||| | ||| ||| ||||||| || |||||| | ||||| || || |||| Sbjct: 856 tgatcctactcaatagagaaattccagatacaccaggcataacaacctctgtcaaaacaa 797 Query: 559 ggtcaatacggttttgcacatcttcaagatattgccatgcatccaatccattctcagcag 618 | ||||| | |||||||| |||||| |||||| |||||| | | ||||| ||||||| Sbjct: 796 gatcaatgctgttttgcatatcttctagatatgtccatgcttgctggccattttcagcag 737 Query: 619 agataacttcata 631 ||| |||||||| Sbjct: 736 ggatgacttcata 724 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 1295 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 1236 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 1235 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 1176 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 1175 tcactgccatctcttgcatt 1156
>dbj|AB189042.1| Oryza sativa (indica cultivar-group) OsPRR37 mRNA for pseudo-response regulator 37, complete cds Length = 2115 Score = 115 bits (58), Expect = 2e-22 Identities = 294/373 (78%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 628 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 569 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 568 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 509 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| |||||||||||||| || |||||||| | ||||||||| ||||||| Sbjct: 508 tacgtatgggcttgactaagaagtcaacagcgccctttgacaaacacttaaaaactgtac 449 Query: 439 tcattgagtcattcttagacatcatgatcacaggaatgcccttacaaatactgtgactcg 498 ||| | ||||| ||||||||| ||||| ||||| ||| |||||| |||| || Sbjct: 448 ccatagcatcatttgaagacatcataatcactggaatattcttgcaaatattgtggttca 389 Query: 499 tgatcttactgagcagaccaatgccagatagacaaggcatggcgacctcagttaatacaa 558 ||||| |||| | ||| ||| ||||||| || |||||| | ||||| || || |||| Sbjct: 388 tgatcctactcaatagagaaattccagatacaccaggcataacaacctctgtcaaaacaa 329 Query: 559 ggtcaatacggttttgcacatcttcaagatattgccatgcatccaatccattctcagcag 618 | ||||| | |||||||| |||||| |||||| |||||| | | ||||| ||||||| Sbjct: 328 gatcaatgctgttttgcatatcttctagatatgtccatgcttgctggccattttcagcag 269 Query: 619 agataacttcata 631 ||| |||||||| Sbjct: 268 ggatgacttcata 256 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 827 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 768 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 767 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 708 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 707 tcactgccatctcttgcatt 688
>dbj|AB189039.1| Oryza sativa (japonica cultivar-group) OsPRR37 mRNA for pseudo-response regulator 37, complete cds Length = 2229 Score = 115 bits (58), Expect = 2e-22 Identities = 294/373 (78%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 628 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 569 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 568 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 509 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| |||||||||||||| || |||||||| | ||||||||| ||||||| Sbjct: 508 tacgtatgggcttgactaagaagtcaacagcgccctttgacaaacacttaaaaactgtac 449 Query: 439 tcattgagtcattcttagacatcatgatcacaggaatgcccttacaaatactgtgactcg 498 ||| | ||||| ||||||||| ||||| ||||| ||| |||||| |||| || Sbjct: 448 ccatagcatcatttgaagacatcataatcactggaatattcttgcaaatattgtggttca 389 Query: 499 tgatcttactgagcagaccaatgccagatagacaaggcatggcgacctcagttaatacaa 558 ||||| |||| | ||| ||| ||||||| || |||||| | ||||| || || |||| Sbjct: 388 tgatcctactcaatagagaaattccagatacaccaggcataacaacctctgtcaaaacaa 329 Query: 559 ggtcaatacggttttgcacatcttcaagatattgccatgcatccaatccattctcagcag 618 | ||||| | |||||||| |||||| |||||| |||||| | | ||||| ||||||| Sbjct: 328 gatcaatgctgttttgcatatcttctagatatgtccatgcttgctggccattttcagcag 269 Query: 619 agataacttcata 631 ||| |||||||| Sbjct: 268 ggatgacttcata 256 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 827 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 768 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 767 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 708 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 707 tcactgccatctcttgcatt 688
>dbj|AK066112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051N02, full insert sequence Length = 3312 Score = 115 bits (58), Expect = 2e-22 Identities = 294/373 (78%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 1096 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 1037 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 1036 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 977 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| |||||||||||||| || |||||||| | ||||||||| ||||||| Sbjct: 976 tacgtatgggcttgactaagaagtcaacagcgccctttgacaaacacttaaaaactgtac 917 Query: 439 tcattgagtcattcttagacatcatgatcacaggaatgcccttacaaatactgtgactcg 498 ||| | ||||| ||||||||| ||||| ||||| ||| |||||| |||| || Sbjct: 916 ccatagcatcatttgaagacatcataatcactggaatattcttgcaaatattgtggttca 857 Query: 499 tgatcttactgagcagaccaatgccagatagacaaggcatggcgacctcagttaatacaa 558 ||||| |||| | ||| ||| ||||||| || |||||| | ||||| || || |||| Sbjct: 856 tgatcctactcaatagagaaattccagatacaccaggcataacaacctctgtcaaaacaa 797 Query: 559 ggtcaatacggttttgcacatcttcaagatattgccatgcatccaatccattctcagcag 618 | ||||| | |||||||| |||||| |||||| |||||| | | ||||| ||||||| Sbjct: 796 gatcaatgctgttttgcatatcttctagatatgtccatgcttgctggccattttcagcag 737 Query: 619 agataacttcata 631 ||| |||||||| Sbjct: 736 ggatgacttcata 724 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 1295 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 1236 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 1235 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 1176 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 1175 tcactgccatctcttgcatt 1156
>dbj|AK059514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B09, full insert sequence Length = 731 Score = 115 bits (58), Expect = 2e-22 Identities = 294/373 (78%), Gaps = 6/373 (1%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 461 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 402 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 401 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 342 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| |||||||||||||| || |||||||| | ||||||||| ||||||| Sbjct: 341 tacgtatgggcttgactaagaagtcaacagcgccctttgacaaacacttaaaaactgtac 282 Query: 439 tcattgagtcattcttagacatcatgatcacaggaatgcccttacaaatactgtgactcg 498 ||| | ||||| ||||||||| ||||| ||||| ||| |||||| |||| || Sbjct: 281 ccatagcatcatttgaagacatcataatcactggaatattcttgcaaatattgtggttca 222 Query: 499 tgatcttactgagcagaccaatgccagatagacaaggcatggcgacctcagttaatacaa 558 ||||| |||| | ||| ||| ||||||| || |||||| | ||||| || || |||| Sbjct: 221 tgatcctactcaatagagaaattccagatacaccaggcataacaacctctgtcaaaacaa 162 Query: 559 ggtcaatacggttttgcacatcttcaagatattgccatgcatccaatccattctcagcag 618 | ||||| | |||||||| |||||| |||||| |||||| | | ||||| ||||||| Sbjct: 161 gatcaatgctgttttgcatatcttctagatatgtccatgcttgctggccattttcagcag 102 Query: 619 agataacttcata 631 ||| |||||||| Sbjct: 101 ggatgacttcata 89 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 660 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 601 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 600 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 541 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 540 tcactgccatctcttgcatt 521
>gb|AY359964.1| Oryza sativa (indica cultivar-group) pseudo-response regulator protein mRNA, partial cds Length = 1923 Score = 97.6 bits (49), Expect = 5e-17 Identities = 147/180 (81%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 322 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 263 Query: 325 tg------gaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattct 378 || || |||||||| | ||||| | |||||||| ||| ||||||||||||||| Sbjct: 262 tgccactggagctgtggcaccgtctccacacatgctgccataggttcttaagttcattct 203 Query: 379 tccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtac 438 | | ||| ||||| ||||| |||||||| || |||||||| | ||||||||| ||||||| Sbjct: 202 tacgtatgggcttgactaaaaagtcaacagcgccctttgacaaacacttaaaaactgtac 143 Score = 58.0 bits (29), Expect = 4e-05 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 521 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 462 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg------agtgccactgccatta 170 || |||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||| Sbjct: 461 ctgtcaatctcaacagcgcgctttgtccatgagctctgcgcttgagtgccactgccgtta 402 Query: 171 tcactgccatccctagcatt 190 ||||||||||| || ||||| Sbjct: 401 tcactgccatctcttgcatt 382
>dbj|AB243684.1| Lemna gibba LgPRRH37 mRNA for pseudo-response regulator 37 homologue, complete cds Length = 2289 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 316 cacttccactggaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcat 375 |||| |||||||| ||||||||||||| ||| | ||||||||||| |||| || || | Sbjct: 801 cactaccactggagctgtggcatctccgccaaacatgctgccaaagattcttgagctcgt 742 Query: 376 tcttccttatcggcttcactaagaagtcaactgctccctttgatagacacttaaagactg 435 |||||| || ||||||||||| ||||||||||| ||||| || | ||||||||||||| Sbjct: 741 tcttccgaattggcttcactaaaaagtcaactgcacccttcgacaaacacttaaagacta 682 Query: 436 tactcattgagtcattcttagacatcatgatcacaggaat 475 ||| ||| || |||| | |||||||||||||| ||||| Sbjct: 681 tacccatagaatcatgcgacgacatcatgatcacgggaat 642
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 351 tgctgccaaagggtcttaagttcattcttccttatcggcttcactaagaagtcaactgct 410 |||||||| ||| |||||||||||||||| | ||| ||||| |||||||||||||| || Sbjct: 29569959 tgctgccataggttcttaagttcattcttacgtatgggcttgactaagaagtcaacagcg 29569900 Query: 411 ccctttgatagacacttaaagactgtac 438 |||||||| | ||||||||| ||||||| Sbjct: 29569899 ccctttgacaaacacttaaaaactgtac 29569872 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 29570186 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 29570127 Query: 325 tg 326 || Sbjct: 29570126 tg 29570125 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgccatccctagcatt 190 |||||||||||||| |||||||||||||| || ||||| Sbjct: 29570283 tgagtgccactgccgttatcactgccatctcttgcatt 29570246 Score = 44.1 bits (22), Expect = 0.60 Identities = 79/98 (80%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 29572917 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 29572858 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg 154 || |||||||| ||||| ||||| |||||||| ||||| Sbjct: 29572857 ctgtcaatctcaacagcgcgctttgtccatgagctctg 29572820
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 351 tgctgccaaagggtcttaagttcattcttccttatcggcttcactaagaagtcaactgct 410 |||||||| ||| |||||||||||||||| | ||| ||||| |||||||||||||| || Sbjct: 96631 tgctgccataggttcttaagttcattcttacgtatgggcttgactaagaagtcaacagcg 96572 Query: 411 ccctttgatagacacttaaagactgtac 438 |||||||| | ||||||||| ||||||| Sbjct: 96571 ccctttgacaaacacttaaaaactgtac 96544 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 265 attcatcaccagtctttggtttggaacacttttgtatatggatgccactttcacttccac 324 ||||||| ||| | |||| ||||| |||||||||| | || ||||||||||||||||||| Sbjct: 96858 attcatccccactttttgatttggcacacttttgtgtctgaatgccactttcacttccac 96799 Query: 325 tg 326 || Sbjct: 96798 tg 96797 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgccatccctagcatt 190 |||||||||||||| |||||||||||||| || ||||| Sbjct: 96955 tgagtgccactgccgttatcactgccatctcttgcatt 96918 Score = 44.1 bits (22), Expect = 0.60 Identities = 79/98 (80%) Strand = Plus / Minus Query: 57 acttgtgcacaagtactatcaggtgaatctgatagatggtcagaagacacaagttgtggg 116 |||||||||||||| |||||||||| ||| | || || || | ||||| | ||||| Sbjct: 99589 acttgtgcacaagtgctatcaggtggatcagctaattgatctggagacatagcctgtgga 99530 Query: 117 ctatcaatctccacagcacgcttcgtccatgaactctg 154 || |||||||| ||||| ||||| |||||||| ||||| Sbjct: 99529 ctgtcaatctcaacagcgcgctttgtccatgagctctg 99492
>ref|NM_120359.2| Arabidopsis thaliana APRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator AT5G02810 (APRR7) mRNA, complete cds Length = 2831 Score = 71.9 bits (36), Expect = 3e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 310 cactttcacttccactggaactgtggcatctcctccatatgtgctgccaaagggtcttaa 369 ||||| |||| ||||| ||||| |||||||| ||||| | |||||||||||| |||||| Sbjct: 886 cacttccactaccactagaactttggcatcttctccaaacatgctgccaaaggatcttaa 827 Query: 370 gttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacacttaa 429 | ||||| || ||||| ||||| || | |||||||| ||||| || |||| ||||||| Sbjct: 826 gctcattttttcttattggcttaacaagaaagtcaacagctcctttcgataagcacttaa 767 Query: 430 agac 433 |||| Sbjct: 766 agac 763
>gb|AY142560.1| Arabidopsis thaliana unknown protein (At5g02810) mRNA, complete cds Length = 2215 Score = 71.9 bits (36), Expect = 3e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 310 cactttcacttccactggaactgtggcatctcctccatatgtgctgccaaagggtcttaa 369 ||||| |||| ||||| ||||| |||||||| ||||| | |||||||||||| |||||| Sbjct: 625 cacttccactaccactagaactttggcatcttctccaaacatgctgccaaaggatcttaa 566 Query: 370 gttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacacttaa 429 | ||||| || ||||| ||||| || | |||||||| ||||| || |||| ||||||| Sbjct: 565 gctcattttttcttattggcttaacaagaaagtcaacagctcctttcgataagcacttaa 506 Query: 430 agac 433 |||| Sbjct: 505 agac 502
>gb|AY039943.1| Arabidopsis thaliana unknown protein (At5g02810) mRNA, complete cds Length = 2633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 310 cactttcacttccactggaactgtggcatctcctccatatgtgctgccaaagggtcttaa 369 ||||| |||| ||||| ||||| |||||||| ||||| | |||||||||||| |||||| Sbjct: 885 cacttccactaccactagaactttggcatcttctccaaacatgctgccaaaggatcttaa 826 Query: 370 gttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacacttaa 429 | ||||| || ||||| ||||| || | |||||||| ||||| || |||| ||||||| Sbjct: 825 gctcattttttcttattggcttaacaagaaagtcaacagctcctttcgataagcacttaa 766 Query: 430 agac 433 |||| Sbjct: 765 agac 762
>dbj|AB046954.1| Arabidopsis thaliana APRR7 mRNA for pseudo-response regulator 7, complete cds Length = 2184 Score = 71.9 bits (36), Expect = 3e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 310 cactttcacttccactggaactgtggcatctcctccatatgtgctgccaaagggtcttaa 369 ||||| |||| ||||| ||||| |||||||| ||||| | |||||||||||| |||||| Sbjct: 625 cacttccactaccactagaactttggcatcttctccaaacatgctgccaaaggatcttaa 566 Query: 370 gttcattcttccttatcggcttcactaagaagtcaactgctccctttgatagacacttaa 429 | ||||| || ||||| ||||| || | |||||||| ||||| || |||| ||||||| Sbjct: 565 gctcattttttcttattggcttaacaagaaagtcaacagctcctttcgataagcacttaa 506 Query: 430 agac 433 |||| Sbjct: 505 agac 502
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 12235 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 12191
>gb|AY970705.1| Hordeum vulgare subsp. spontaneum pseudo-response regulator PPD-H1 (Ppd-H1) gene, complete cds Length = 3552 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 1444 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 1400
>gb|AY970704.1| Hordeum vulgare subsp. vulgare cultivar Triumph pseudo-response regulator PPD-H1 (Ppd-H1) gene, complete cds Length = 3539 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 1431 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 1387
>gb|AY970703.1| Hordeum vulgare cultivar Golden Promise pseudo-response regulator PPD-H1 (Ppd-H1) gene, complete cds Length = 3539 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 1431 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 1387
>gb|AY970702.1| Hordeum vulgare subsp. vulgare cultivar Optic pseudo-response regulator PPD-H1 (Ppd-H1) gene, complete cds Length = 3539 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 1431 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 1387
>gb|AY970701.1| Hordeum vulgare subsp. vulgare cultivar Igri pseudo-response regulator PPD-H1 (Ppd-H1) gene, complete cds Length = 3548 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 152 ctgagtgccactgccattatcactgccatccctagcattgggccc 196 ||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct: 1440 ctgagtgccactgccattatcgctgccatcccttgcattgagccc 1396
>dbj|AB243681.1| Lemna paucicostata LpPRRH37 mRNA for pseudo-response regulator 37 homologue, complete cds Length = 2387 Score = 63.9 bits (32), Expect = 7e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 324 ctggaactgtggcatctcctccatatgtgctgccaaagggtcttaagttcattcttcctt 383 ||||| ||||| ||||| ||||||| |||||||| || | || ||||||||||| | Sbjct: 819 ctggagctgtgacatcttctccatacatgctgccagagatttttgagttcattctttcga 760 Query: 384 atcggcttcactaagaagtcaactgctccctttgatagacacttaaagactgtactcatt 443 || ||||||||||| || ||||| || |||||||| | ||||||||||||| ||| ||| Sbjct: 759 attggcttcactaaaaaatcaacagcaccctttgacaaacacttaaagactatacccatg 700 Query: 444 gagtcattcttagacatcatgatcacaggaat 475 || |||| |||||||| ||||||||||| Sbjct: 699 gaatcatgggacgacatcataatcacaggaat 668
>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project) Length = 104769 Score = 58.0 bits (29), Expect = 4e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 333 tggcatctcctccatatgtgctgccaaagggtcttaagttcattcttccttatcggcttc 392 |||||||| ||||| | |||||||||||| ||||||| ||||| || ||||| ||||| Sbjct: 36102 tggcatcttctccaaacatgctgccaaaggatcttaagctcattttttcttattggctta 36161 Query: 393 actaagaagtcaactgctccctttgatagacacttaaagac 433 || | |||||||| ||||| || |||| ||||||||||| Sbjct: 36162 acaagaaagtcaacagctcctttcgataagcacttaaagac 36202
>ref|XM_776031.1| PREDICTED: Strongylocentrotus purpuratus similar to B-cell linker (LOC575645), mRNA Length = 1230 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 308 gccactttcacttccactggaact 331 |||||||||||||||||||||||| Sbjct: 645 gccactttcacttccactggaact 622
>gb|AC182673.2| Populus trichocarpa clone Pop1-26A1, complete sequence Length = 80768 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 566 acggttttgcacatcttcaagatatt 591 ||||||||||| |||||||||||||| Sbjct: 14727 acggttttgcatatcttcaagatatt 14752
>emb|AL021127.2|MMCMX137 Mus musculus chromosome X contigA; putative Magea9 gene, Caltractin, NAD(P) steroid dehydrogenase and Zinc finger protein 185 Length = 195025 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgcc 178 ||||| |||||||||||||||||||| Sbjct: 190605 tgagtcccactgccattatcactgcc 190580
>emb|BX813330.7| Mouse DNA sequence from clone RP23-11C16 on chromosome X, complete sequence Length = 148732 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgcc 178 ||||| |||||||||||||||||||| Sbjct: 25328 tgagtcccactgccattatcactgcc 25303
>gb|AY611028.1| Castanea sativa timing of CAB expression 1 protein (TOC1) mRNA, complete cds Length = 2639 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 456 gacatcatgatcacaggaatgc 477 |||||||||||||||||||||| Sbjct: 716 gacatcatgatcacaggaatgc 695
>emb|AL136329.1|MM303011 Mus musculus chromosome X, clone RP21-303O11 Length = 123835 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 153 tgagtgccactgccattatcactgcc 178 ||||| |||||||||||||||||||| Sbjct: 46879 tgagtcccactgccattatcactgcc 46854
>ref|XM_526051.1| PREDICTED: Pan troglodytes similar to F-box protein 36; F-box only protein 36 (LOC470669), mRNA Length = 603 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 575 cacatcttcaagatattgcca 595 ||||||||||||||||||||| Sbjct: 362 cacatcttcaagatattgcca 382
>gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, complete cds Length = 136345 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ccactgccattatcactgcca 179 ||||||||||||||||||||| Sbjct: 132001 ccactgccattatcactgcca 132021
>gb|AC091548.11| Mus musculus Strain C57BL6/J Chromosome 11 BAC, RP23-193K14, complete sequence Length = 214157 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 36056 actgccattatcactgccatc 36036
>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the 3' end of the LPA gene for lipoprotein (Lp(a)) and a CpG island, complete sequence Length = 135751 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 ccactgccattatcactgcca 179 ||||||||||||||||||||| Sbjct: 18981 ccactgccattatcactgcca 18961
>emb|AL713641.1|HSM802963 Homo sapiens genomic DNA; cDNA DKFZp761C1622 (from clone DKFZp761C1622) Length = 3427 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gtcagaagacacaagttgtgg 115 ||||||||||||||||||||| Sbjct: 544 gtcagaagacacaagttgtgg 564
>gb|AC114941.2| Homo sapiens chromosome 5 clone CTD-2287M17, complete sequence Length = 159281 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 577 catcttcaagatattgccatg 597 ||||||||||||||||||||| Sbjct: 122528 catcttcaagatattgccatg 122548
>gb|AC103552.1| Homo sapiens chromosome 1 clone RP11-442N6, complete sequence Length = 160837 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 612 tcagcagagataacttcatag 632 ||||||||||||||||||||| Sbjct: 46382 tcagcagagataacttcatag 46402
>dbj|AK035970.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630022H21 product:weakly similar to CDNA FLJ12878 FIS, CLONE NT2RP2003840, WEAKLY SIMILAR TO HYPOTHETICAL 48.1 KDA PROTEIN B0403.2 IN CHROMOSOME X [Homo sapiens], full insert sequence Length = 2423 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 1798 actgccattatcactgccatc 1778
>dbj|AK045398.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230113M03 product:weakly similar to PUTATIVE UBIQUITIN-CONJUGATING ENZYME E2 [Arabidopsis thaliana], full insert sequence Length = 2320 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 1949 actgccattatcactgccatc 1929
>gb|AC013459.9| Homo sapiens BAC clone RP11-169L20 from 2, complete sequence Length = 170705 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gtcagaagacacaagttgtgg 115 ||||||||||||||||||||| Sbjct: 37897 gtcagaagacacaagttgtgg 37917
>ref|NM_173755.3| Mus musculus ubiquitin-conjugating enzyme E2O (Ube2o), mRNA Length = 5192 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 4579 actgccattatcactgccatc 4559
>dbj|AK129431.1| Mus musculus mRNA for mKIAA1734 protein Length = 5192 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 4580 actgccattatcactgccatc 4560
>gb|BC023329.1| Mus musculus ubiquitin-conjugating enzyme E2O, mRNA (cDNA clone IMAGE:3986325) Length = 2696 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 2310 actgccattatcactgccatc 2290
>gb|BC059193.1| Mus musculus ubiquitin-conjugating enzyme E2O, mRNA (cDNA clone MGC:65407 IMAGE:4160667), complete cds Length = 4569 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 4205 actgccattatcactgccatc 4185
>gb|BC051108.1| Mus musculus ubiquitin-conjugating enzyme E2O, mRNA (cDNA clone IMAGE:5360492), containing frame-shift errors Length = 3337 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 2924 actgccattatcactgccatc 2904
>gb|BC055067.1| Mus musculus ubiquitin-conjugating enzyme E2O, mRNA (cDNA clone IMAGE:30030967), complete cds Length = 2306 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 1671 actgccattatcactgccatc 1651
>gb|BC039233.1| Mus musculus ubiquitin-conjugating enzyme E2O, mRNA (cDNA clone IMAGE:4920113), with apparent retained intron Length = 3418 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 3046 actgccattatcactgccatc 3026
>emb|AL645851.8| Mouse DNA sequence from clone RP23-193A16 on chromosome 11, complete sequence Length = 112037 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 actgccattatcactgccatc 181 ||||||||||||||||||||| Sbjct: 75976 actgccattatcactgccatc 75996
>emb|CT030077.2| Xenopus tropicalis finished cDNA, clone TEgg100a05 Length = 1510 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 tatatggatgccactttcacttcc 322 |||||||| ||||||||||||||| Sbjct: 855 tatatggaggccactttcacttcc 832
>gb|AC147148.2| Pan troglodytes BAC clone CH251-267E22 from Y, complete sequence Length = 151370 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggaacacttttgtatatgga 306 |||||||||||||||||||| Sbjct: 146659 ggaacacttttgtatatgga 146678
>gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosome 13, complete sequence Length = 207318 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 acacttttgtatatggatgc 309 |||||||||||||||||||| Sbjct: 66157 acacttttgtatatggatgc 66176
>emb|AL445228.13| Human DNA sequence from clone RP11-382D12 on chromosome 1 Contains a novel gene, the 5' end of the C1orf21 gene for chromosome 1 open reading frame 21 and a CpG island, complete sequence Length = 116252 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gtgaatacttgtgcacaagt 70 |||||||||||||||||||| Sbjct: 53671 gtgaatacttgtgcacaagt 53652
>emb|AL445669.9| Human DNA sequence from clone RP11-163G10 on chromosome 1 Contains the 5' end of the ZMYND12 gene for zinc finger MYND domain containing 12, a novel gene, the 5' end of a novel gene, a ribosomal protein S3a (RPS3A) pseudogene, a thymosin, beta 4, X-linked (TMSB4X) pseudogene, a novel pseudogene (DC2) and two CpG islands, complete sequence Length = 153640 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 catccaatccattctcagca 617 |||||||||||||||||||| Sbjct: 32431 catccaatccattctcagca 32412
>gb|AC069233.16| Homo sapiens 3 BAC RP11-95H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154204 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 atattcatcaccagtctttg 282 |||||||||||||||||||| Sbjct: 34115 atattcatcaccagtctttg 34096
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ttggtttggaacacttttgt 299 |||||||||||||||||||| Sbjct: 3124215 ttggtttggaacacttttgt 3124196
>dbj|BS000668.1| Pan troglodytes chromosome Y clone:PTFY-015J14, complete sequences Length = 38005 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggaacacttttgtatatgga 306 |||||||||||||||||||| Sbjct: 6435 ggaacacttttgtatatgga 6416
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggaacacttttgtatatgga 306 |||||||||||||||||||| Sbjct: 4712 ggaacacttttgtatatgga 4693
>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence Length = 197483 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 atattcatcaccagtctttggtttggaa 290 |||||||||||| || |||||||||||| Sbjct: 190580 atattcatcacctgtgtttggtttggaa 190607
>gb|AC093556.2| Homo sapiens chromosome 3 clone RP11-48E21, complete sequence Length = 152726 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 atattcatcaccagtctttggtttggaa 290 |||||||||||| || |||||||||||| Sbjct: 18852 atattcatcacctgtgtttggtttggaa 18879
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 ttggtttggaacacttttgt 299 |||||||||||||||||||| Sbjct: 3061385 ttggtttggaacacttttgt 3061366
>gb|AY371288.1| Mesembryanthemum crystallinum timing of CAB expression 1 (TOC1) mRNA, complete cds Length = 2617 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 gacatcatgatcacaggaat 475 |||||||||||||||||||| Sbjct: 757 gacatcatgatcacaggaat 738
>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence Length = 110434 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 atattcatcaccagtctttggtttggaa 290 |||||||||||| || |||||||||||| Sbjct: 1219 atattcatcacctgtgtttggtttggaa 1192
>gb|AF020503.1|AF020503 Homo sapiens FRA3B common fragile region, diadenosine triphosphate hydrolase (FHIT) gene, exon 5 Length = 206880 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 atattcatcaccagtctttggtttggaa 290 |||||||||||| || |||||||||||| Sbjct: 167597 atattcatcacctgtgtttggtttggaa 167570 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,900,297 Number of Sequences: 3902068 Number of extensions: 4900297 Number of successful extensions: 85002 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84704 Number of HSP's gapped (non-prelim): 288 length of query: 689 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 666 effective length of database: 17,143,297,704 effective search space: 11417436270864 effective search space used: 11417436270864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
