>RUVB_TREPA (P96115) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 350

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/44 (45%), Positives = 23/44 (52%)
 Frame = +3

Query: 165 DYPIQWSAGGCTFNRSVRIPLNPVVLEETIGIASTEEALMVSSP 296
           DY + W  G     R+VRIPL P  L     I +T  A MVSSP
Sbjct: 133 DYELDWVIGQGPSARTVRIPLPPFTL-----IGATTRAGMVSSP 171

>SYF2_KLULA (Q6CPI4) Pre-mRNA-splicing factor SYF2|
          Length = 221

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = +3

Query: 63  RHNRQLLWEVQTVTK*QYKRITSVLCIYRTSQVIDYPIQWSAGGCTFNRSVRIPLNPVVL 242
           RHN+ ++ + QT+ K  YK+    L      + I +P++   GG T +  V++  NP ++
Sbjct: 119 RHNKSVMGDFQTIAKNSYKKEVDAL-----PKDISHPLK---GGITEDGKVQVEDNPELV 170

Query: 243 EETI 254
           E+ +
Sbjct: 171 EKMV 174

>Y1301_MYCTU (Q10618) Hypothetical protein Rv1301/MT1340|
          Length = 217

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 174 IQWSAGGCTFNRSVRIPLNPVVLE--ETIGIASTEEALMVSSPRPSDMEQA 320
           +QW  G       +R+PL+PV +E    +G  +   A +   P P D EQA
Sbjct: 108 LQWDLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISGHPPPVDAEQA 158

>RUVB_TREDE (P61538) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 343

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 165 DYPIQWSAGGCTFNRSVRIPLNPVVLEETIGIASTEEALMVSSP 296
           DY + W  G     R+VRIP+ P  L     + +T  A MVSSP
Sbjct: 131 DYELDWIIGQGPGARTVRIPIPPFTL-----VGATTRAGMVSSP 169

>MURB_XYLFA (Q9PAE6) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 351

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +3

Query: 87  EVQTVTK*QYKRITSVLC--IYRTSQVIDYPIQWSAGGCTFNRSVRIPLNPVVLEETIGI 260
           E    T+ Q+ R+T+  C   YR S+    P ++      F    R+PL   +     GI
Sbjct: 151 EAYDQTEGQFVRLTASECEFAYRNSRFKREPNRYLIAAVEF----RLPLLHELKLNYAGI 206

Query: 261 ASTEEALMVSSPRPSDMEQA 320
           +   EAL ++ P P D+ QA
Sbjct: 207 SEELEALQITLPEPRDVAQA 226

>YOJL_BACSU (O31852) Hypothetical protein yojL precursor|
          Length = 414

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/98 (26%), Positives = 46/98 (46%)
 Frame = -1

Query: 562 LGMTFVFIGISLLAPDENKADTKDDSNSKKDLTIDMNSEAHVPGNCRPRKLPMEETELDD 383
           L  T +++G SL  P+ +K  T   SNS K  T  +     +    +  K  M  +EL  
Sbjct: 57  LKSTVLYVGQSLKVPESSKKSTTSPSNSSKTSTYTVAYGDSLWMIAKNHK--MSVSELKS 114

Query: 382 MDSFSTSVRVKAKRILSRAKSACSMSLGLGEETISASS 269
           ++S S+ +    +++  +  S+ S S G  + + S SS
Sbjct: 115 LNSLSSDLIRPGQKLKIKGTSSSSGSNGSKKNSGSNSS 152

>ETFB_BACSU (P94550) Electron transfer flavoprotein beta-subunit (Beta-ETF)|
           (Electron transfer flavoprotein small subunit) (ETFSS)
          Length = 257

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 439 VPGNCRPRKLPMEETELDDMDSFSTSVRVKAKRI 338
           +PG  + +K P+EE ELDD+D        K K I
Sbjct: 188 LPGIMKAKKKPLEELELDDLDLDEEDAEPKLKTI 221

>YA84_SCHPO (Q09773) Hypothetical protein C22F3.04 in chromosome I|
          Length = 1428

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 126 TSVLCIYRTSQVIDYPIQWSAGGCTFNRSVRIPLNPVVLEETIGIASTEEALMVS 290
           T V+  YR S+  +Y I  S  GC     V IPL+P    E++ +   EE + V+
Sbjct: 152 TRVILYYRKSEASEYII--SIFGCLLLGIVVIPLSPSSSSESLKLVVNEEKVRVA 204

>GATA2_CLOAB (Q97EX8) Glutamyl-tRNA(Gln) amidotransferase subunit A 2 (EC|
           6.3.5.-) (Glu-ADT subunit A 2)
          Length = 478

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 346 KRILSRAKSACSMSLGLGEETISASSVLAMPMVSSRTTGFRGIR 215
           +++ S     C MSL + EE +SA  +++    SS    F GIR
Sbjct: 286 EKLKSLGAEVCEMSLPITEEGLSAYYIISSAEASSNLARFDGIR 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,198,779
Number of Sequences: 219361
Number of extensions: 1813238
Number of successful extensions: 3886
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3885
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)