ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35j16 |
|---|---|
| Clone Library Name | barley_pub |
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 34.3 bits (77), Expect = 0.31 Identities = 41/133 (30%), Positives = 49/133 (36%), Gaps = 1/133 (0%) Frame = +3 Query: 231 ESERWLRHGVRGLQRDGAGKYSGSRRRHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTG 410 +SE W H G D + +G RR + A P S P P P+Q P G Sbjct: 244 DSEGW-DHAHGGGTGDTSRSPAGLRRANSVQAARPAPAPVPS----PAPPQPVQPGPPGG 298 Query: 411 VVITPARGR-DRQSREAASLPPLTPAVVEVEGDALASVSAPAGASTSVFGSCVHNFSDAA 587 TP GR QS EA PP P A + PAG F + H AA Sbjct: 299 SRATPGPGRFPEQSTEA---PPSDPGYPGAVAPAREERTGPAGG----FQAAPHT---AA 348 Query: 588 ADNATVPXRLPSP 626 + P R P P Sbjct: 349 PYSQAAPARQPPP 361
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 33.9 bits (76), Expect = 0.40 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 16/109 (14%) Frame = +3 Query: 321 TATAPPMLAFVSAA-------RQPVVPLPMQGLEPTGVVITPAR-GRDRQSREA------ 458 T APP F SAA P P G G + P+ G+ Q+ ++ Sbjct: 1414 TPDAPPAGLFASAAISNPSPFGSPTTRAPASGGNIFGQAVKPSVFGQPAQAGDSGGSIFG 1473 Query: 459 --ASLPPLTPAVVEVEGDALASVSAPAGASTSVFGSCVHNFSDAAADNA 599 ++ P + + G+ +V APA STS+FG V S AAA A Sbjct: 1474 GGSASTPFGSSSIFGGGNTQGAVGAPAAGSTSIFGQKVFGQSSAAAPAA 1522
>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)| Length = 326 Score = 32.7 bits (73), Expect = 0.90 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Frame = -2 Query: 607 GTVALSAAASEKLCTHDPKTEVEAPAGAETEARASPST--------STTAGVRGGREAAS 452 G V + ++ TH+P T + A SP+T S+T G G S Sbjct: 59 GNVTVHTSSGPTTVTHNPATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPS 118 Query: 451 RLCRSRPRAGVMTTPVGSRPCI 386 RS+ G T GS+PC+ Sbjct: 119 PSPRSKGALGNYTWANGSQPCV 140
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 32.7 bits (73), Expect = 0.90 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 20/104 (19%) Frame = -2 Query: 625 GDGRRXGTVALSAAASEKLCTHDPKTEV-------EAPAGAETEARASPS---------- 497 G ++ G VA+ A + + + E EAPA A T A+A P+ Sbjct: 510 GPPQKAGPVAVQVKAEKPMDNSESSEESSDSADSEEAPA-AMTAAQAKPALKIPQTKACP 568 Query: 496 --TSTTAGVRGGREAASRLCRSRPR-AGVMTTPVGSRPCIGSGT 374 T+TTA + A R+ PR AG T+P GS P + GT Sbjct: 569 KKTNTTASAK---VAPVRVGTQPPRKAGTATSPAGSSPAVAGGT 609
>LAT_HUMAN (O43561) Linker for activation of T-cells family member 1 (36 kDa| phospho-tyrosine adapter protein) (pp36) (p36-38) Length = 262 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +2 Query: 203 ASFLNQRASGIRKMAPSWRTWTPTRWCRKVQRLSSPPPTHCHGA 334 AS+ N+ ASGIR W W P+ W R + +S PP C A Sbjct: 108 ASYENEGASGIRGAQAGWGVWGPS-WTR-LTPVSLPPEPACEDA 149
>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 32.0 bits (71), Expect = 1.5 Identities = 29/93 (31%), Positives = 38/93 (40%) Frame = +3 Query: 282 AGKYSGSRRRHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPARGRDRQSREAA 461 A +GS R +A P L F S + PV P L TG+ ++ SRE + Sbjct: 589 AAAAAGSLSRSHFLGSARPRLRF-SPYQIPVTIPPSTSLLTTGLAAEGSKAAGSNSREPS 647 Query: 462 SLPPLTPAVVEVEGDALASVSAPAGASTSVFGS 560 LP L AL V AP+ + S GS Sbjct: 648 PLPEL----------ALRKVGAPSRGALSPSGS 670
>BD01_RAT (O89117) Beta-defensin 1 precursor (BD-1) (RBD-1)| Length = 69 Score = 31.6 bits (70), Expect = 2.0 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -3 Query: 66 CPGHTTPQRTCEPDASYCC 10 CP HT Q TC+PD CC Sbjct: 49 CPSHTKLQGTCKPDKPNCC 67
>APX_XENLA (Q01613) Apical protein (APX)| Length = 1420 Score = 31.6 bits (70), Expect = 2.0 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 11/109 (10%) Frame = +3 Query: 327 TAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPAR-GRDRQSREAASLPPLTPAVVEVEG 503 T P + SA QP P P+ L+ V TPA R+ + A L+ +G Sbjct: 946 TDNPCSSSPSAEVQPGAPEPLHCLQTEDEVFTPASTARNEEPNSTAFSYLLSTGKPVSQG 1005 Query: 504 DALA----------SVSAPAGASTSVFGSCVHNFSDAAADNATVPXRLP 620 +A A + P + T+ N SDAAA+ T +LP Sbjct: 1006 EATALSFTFLPEQDRLEHPIVSETTPSSESDENVSDAAAEKETTTTQLP 1054
>KNG1_HUMAN (P01042) Kininogen-1 precursor (Alpha-2-thiol proteinase inhibitor)| [Contains: Kininogen-1 heavy chain; Bradykinin (Kallidin I); Lysyl-bradykinin (Kallidin II); Kininogen-1 light chain; Low molecular weight growth-promoting factor] Length = 644 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Frame = +3 Query: 252 HGVRGLQRDGAGKYSGSRRRHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPAR 431 HG + GK++G + H +++ + P P+ L GV +T + Sbjct: 503 HGKHKNKGKKNGKHNGWKTEHLASSSEDSTTPSAQTQEKTEGPTPIPSLAKPGVTVTFSD 562 Query: 432 GRDRQSREAASLPPLTPAVVEVEGDALASVSA-PAGAS 542 +D A +PP++PA ++ + D + + P G S Sbjct: 563 FQD-SDLIATMMPPISPAPIQSDDDWIPDIQTDPNGLS 599
>VPAP_PRVKA (P36702) DNA polymerase processivity factor (Polymerase accessory| protein) (PAP) (UL42 homolog) Length = 384 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/64 (34%), Positives = 25/64 (39%) Frame = -2 Query: 559 DPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCIGS 380 DP T AP GA + + A G AA RP A M TP+ RP S Sbjct: 322 DPATVPAAPEGA--------AATVAAACGAGASAAPAAGDKRPAAPRMYTPIAKRPRAAS 373 Query: 379 GTTG 368 G G Sbjct: 374 GEGG 377
>RREB1_HUMAN (Q92766) RAS-responsive element-binding protein 1 (RREB-1)| (Raf-responsive zinc finger protein LZ321) Length = 755 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = -2 Query: 607 GTVALSAAASEKLCTHDPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCRSRPR 428 G+V +A + T PK E PA A + ASP+ A + R RSRPR Sbjct: 175 GSVPKAATTATPAATTSPKESSEPPAPASSPEAASPTEQGPART-SKKRGRKRGMRSRPR 233 Query: 427 A 425 A Sbjct: 234 A 234
>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)| Length = 702 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/93 (31%), Positives = 38/93 (40%) Frame = +3 Query: 282 AGKYSGSRRRHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPARGRDRQSREAA 461 A +GS R +A P L F S + PV P L TG+ ++ SRE + Sbjct: 589 AAAAAGSLSRSPFLGSARPRLRF-SPYQIPVTIPPSTSLLTTGLASEGSKAAGGNSREPS 647 Query: 462 SLPPLTPAVVEVEGDALASVSAPAGASTSVFGS 560 LP L AL V AP+ + S GS Sbjct: 648 PLPEL----------ALRKVGAPSRGALSPSGS 670
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/70 (34%), Positives = 27/70 (38%) Frame = +3 Query: 324 ATAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPARGRDRQSREAASLPPLTPAVVEVEG 503 ATA A VS A +P V + A Q AA P PA+V V Sbjct: 930 ATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPA 989 Query: 504 DALASVSAPA 533 A A SAPA Sbjct: 990 PAAAQASAPA 999
>PCD16_HUMAN (Q96JQ0) Protocadherin-16 precursor (Dachsous 1) (Cadherin-19)| (Fibroblast cadherin 1) Length = 3298 Score = 30.4 bits (67), Expect = 4.5 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%) Frame = +3 Query: 243 WLRHGVRGLQRDG---AGKYSGSRRRHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTGV 413 W + G LQ D AG G TA P++ F+SA V + E +GV Sbjct: 41 WGQAGSLDLQIDEEQPAGTLIGDISAGLPAGTAAPLMYFISAQEGSGVGTDLAIDEHSGV 100 Query: 414 VITPARGRDRQSREAASLPPLTP--AVVEV 497 V T AR DR+ R+ +TP A VEV Sbjct: 101 VRT-ARVLDREQRDRYRFTAVTPDGATVEV 129
>MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (Mbn(83))| Length = 653 Score = 30.4 bits (67), Expect = 4.5 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = -2 Query: 538 APAGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCIGSGTTGCRA 359 AP G + A S S GV GG +A+ +GS IG G TG +A Sbjct: 451 APGGRKVSAGGIGSGSAIGGVSGGSKASGN-----------GGAIGSGSAIGGGATGSKA 499 Query: 358 A--DTKASIGGAVA 323 + ++IGG V+ Sbjct: 500 SGFGFGSNIGGGVS 513
>PTPS_SYNY3 (Q55798) Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC| 4.2.3.12) (PTPS) (PTP synthase) Length = 129 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Frame = -1 Query: 401 FKALHRQRHHGLPCSRHKGQHRRRRGSVLVAATRAAVLSCTIALESTYAMTEPSF*FQMP 222 F+A H+ HH C R G RG V VA+ R + +++ + Sbjct: 10 FEAAHQLPHHEGKCRRLHG--HSFRGRVYVASDRLKTTGSETGMVMDFSV------LKAH 61 Query: 221 VDSRKKQAIGHWILNAVKKIDNPVSFLRMDFLYGRIIDARCL-LRTTA*CRSAAPATQHH 45 +D K + H+ LN +++P S +++ ++ +A L + + A ++ Sbjct: 62 LDPLVKNHLDHYYLNDSLGLESPTSEAIAAWIFAKLEEAGVPGLHSVEVLETCTSAARYF 121 Query: 44 SGRASP 27 S R SP Sbjct: 122 SPRLSP 127
>AQL1_THEAQ (P08594) Aqualysin-1 precursor (EC 3.4.21.-) (Aqualysin I)| Length = 513 Score = 30.0 bits (66), Expect = 5.8 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Frame = +3 Query: 252 HGVRGLQRDGAGKYSGS-------RRRHQHTATAPPMLAF-VSAARQPVVPLPMQGLEPT 407 + VR L +G+G SG R H+ A A L VS A V + Sbjct: 219 YAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVKNSIAA---- 274 Query: 408 GVVITPARGRDRQSREAASLPPLTPAVVEVEGDALASVSAPAGASTSVFGSCVHNFSDAA 587 GVV A G D + A + P A G A+ S+ A AS S +GSCV F+ A Sbjct: 275 GVVYAVAAGNDNAN--ACNYSPARVAEALTVG---ATTSSDARASFSNYGSCVDLFAPGA 329 Query: 588 A 590 + Sbjct: 330 S 330
>PMPH_CHLTR (O84880) Probable outer membrane protein pmpH precursor| (Polymorphic membrane protein H) Length = 1016 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 604 TVALSAAASEKLCTHDPKTEVEAPAGAETEARASPSTSTTAG 479 TV+L+A+ KL +DP + + AGA T SPS+S+ G Sbjct: 434 TVSLNASGLSKLIFYDPVVQNNSAAGAST---PSPSSSSMPG 472
>IF2_BURS3 (Q39H30) Translation initiation factor IF-2| Length = 972 Score = 29.6 bits (65), Expect = 7.6 Identities = 22/68 (32%), Positives = 29/68 (42%) Frame = +3 Query: 336 PMLAFVSAARQPVVPLPMQGLEPTGVVITPARGRDRQSREAASLPPLTPAVVEVEGDALA 515 P A V A P P + E G + PA+ Q+R PAV + G A Sbjct: 269 PRKAVVKAVEPPKPVEPPKPAEAKGTLHKPAKPEGAQAR---------PAVKKPAGAAAP 319 Query: 516 SVSAPAGA 539 + +APAGA Sbjct: 320 ATTAPAGA 327
>CEP68_MOUSE (Q8C0D9) Centrosomal protein of 68 kDa (Cep68 protein)| Length = 733 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 459 ASLPPLTPAVVEVEGDALASVSAPAGASTSVFGSCVHNFS-DAAADNATVPXRLPSP 626 + L P P + VEG L A G + VF S VH S + AD + P R P P Sbjct: 32 SGLEPDQPLHLGVEGGPLWRAEADPGCISGVFLSRVHTASKEPVADRSKPPLRGPLP 88
>SYW2_DEIRA (Q9RVD6) Tryptophanyl-tRNA synthetase II (EC 6.1.1.2)| (Tryptophan--tRNA ligase II) (TrpRS II) Length = 351 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 90 PEKTTCIYDASVQEIHPEKANWIVYFLNSI 179 P+KTTC+ VQ PE A VYFLN + Sbjct: 94 PQKTTCV----VQSAVPELAELTVYFLNLV 119
>ZN672_MOUSE (Q99LH4) Zinc finger protein 672| Length = 468 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 16/68 (23%) Frame = -1 Query: 395 ALHRQRH----------------HGLPCSRHKGQHRRRRGSVLVAATRAAVLSCTIALES 264 ALHR+ H HG S+H+ HRR R + + A T V++ + + Sbjct: 386 ALHRKTHLGERTAECTECGKFFSHGRSLSQHQRSHRRARAAAMAATTTTTVVT-EVTIGP 444 Query: 263 TYAMTEPS 240 + +T P+ Sbjct: 445 SLTLTGPT 452
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 29.3 bits (64), Expect = 10.0 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Frame = -2 Query: 625 GDGRRXGTVAL-----SAAASEKLCTHDPKTEVEAPAGAETEARASPSTSTTAGVRGGRE 461 GD GT+ L +AAA+ P APA A A A+ T + R GR Sbjct: 183 GDNVAEGTLLLILEGAAAAAAPAAAAAAPAPAASAPAPAPAPAAAASGTGRSTCCRAGRR 242 Query: 460 AASRLCRSRPRAG 422 +R R R G Sbjct: 243 WRNRQGRPRQPLG 255
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 29.3 bits (64), Expect = 10.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 412 TPVGSRPCIGSGTTGCRAADTKASIGGAVAVCWWRRREP 296 +P GS G+ G A A+A+ WWRR++P Sbjct: 216 SPAGSNRITGAIAGGVAAGAALLFAVPAIALAWWRRKKP 254
>PANG_DROME (P91943) Protein pangolin| Length = 751 Score = 29.3 bits (64), Expect = 10.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 200 PASFLNQRASGIRKMAPSWRTWTPTRWCRKVQRLSSPPPTHC 325 P S+ N SG+ + + + P +C LS+PPP HC Sbjct: 88 PYSYANGSPSGL-PVTMANKIGLPPFFCHNADPLSTPPPAHC 128
>IF2C_EUGGR (Q9XEK9) Translation initiation factor IF-2, chloroplast (Fragment)| Length = 822 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = +3 Query: 309 RHQHTATAPPMLAFVSAARQPVVPLPMQGLEPTGVVITPARGRDRQSREAASLPPLTPA 485 R + PP +ARQPV +P P G V + A + + A PP TP+ Sbjct: 16 RPSTSTPTPPEAPTSPSARQPVTQVPQANSVPAGAVASQAEVK----KPADPQPPATPS 70
>SHC2_HUMAN (P98077) SHC transforming protein 2 (SH2 domain protein C2) (Src| homology 2 domain-containing transforming protein C2) (Protein Sck) Length = 551 Score = 29.3 bits (64), Expect = 10.0 Identities = 25/77 (32%), Positives = 29/77 (37%) Frame = -2 Query: 532 AGAETEARASPSTSTTAGVRGGREAASRLCRSRPRAGVMTTPVGSRPCIGSGTTGCRAAD 353 AGA A P + GV A C R A P SR C G+G+ G R Sbjct: 23 AGASGGADPQPEPAGPGGVPALAAAVLGACEPRC-AAPCPLPALSR-CRGAGSRGSRGGR 80 Query: 352 TKASIGGAVAVCWWRRR 302 A G A A W R+ Sbjct: 81 GAAGSGDAAAAAEWIRK 97
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 29.3 bits (64), Expect = 10.0 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = +3 Query: 369 PVVPLPMQGLEPTGVVITPARGRDR-QSREAASLPPLTPAVVEVEGDALASVSAPAGAST 545 P P P GL ++ P QS+ AA+ PP PAV +A+ S P +ST Sbjct: 35 PPPPPPRGGLRD---ILNPVSSNSAVQSQAAAAAPPPPPAVASSSLHGIAA-SVPPPSST 90 Query: 546 SVFGSCVHNFSDAAADNATVPXRLPS 623 + + H+ +++ N P R PS Sbjct: 91 NSMRATPHS---SSSFNLRSPTREPS 113
>CLK1_MOUSE (P22518) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) (Protein kinase STY) Length = 483 Score = 29.3 bits (64), Expect = 10.0 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -1 Query: 437 TSSCRGDDDTGRFKALHRQRHHGLPCSRHKGQHRRRR 327 +S G +K+ HR RHH H HRR+R Sbjct: 100 SSKSSGRSGRSSYKSKHRSRHHTSQHHSHGKSHRRKR 136
>TRPE2_HALSA (Q9HS66) Anthranilate synthase component 1 2 (EC 4.1.3.27)| (Anthranilate synthase component I 2) Length = 488 Score = 29.3 bits (64), Expect = 10.0 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 13/105 (12%) Frame = +3 Query: 351 VSAARQPVVP---------LPMQGLEPTGVVITPARGRDRQSREAASLPPLTPAVVEVEG 503 ++A R+P P +P+ P G GRDR AA++ PAV Sbjct: 142 IAAWREPFTPGDDLRLIAAVPVDEYTPDGAF---EAGRDRVQSLAAAIRDGDPAVGPPPA 198 Query: 504 DALASVSAPAGASTSVFGSCVHNFSDAAAD----NATVPXRLPSP 626 D+ A + AG + F S V DA D A V RL +P Sbjct: 199 DSPAPFESVAG--RAAFESRVRRIQDAIRDGDTFQANVSHRLDAP 241
>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1| Length = 1906 Score = 29.3 bits (64), Expect = 10.0 Identities = 25/87 (28%), Positives = 37/87 (42%) Frame = -2 Query: 619 GRRXGTVALSAAASEKLCTHDPKTEVEAPAGAETEARASPSTSTTAGVRGGREAASRLCR 440 G+R G + AA+S P +P G++T+ SPST G++ S + R Sbjct: 1095 GKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPSTP-------GKDQRSMILR 1147 Query: 439 SRPRAGVMTTPVGSRPCIGSGTTGCRA 359 SR + + RP G CRA Sbjct: 1148 SRTKTQEIFHSKRRRPSEGR-LPNCRA 1173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,409,277 Number of Sequences: 219361 Number of extensions: 1680599 Number of successful extensions: 6665 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 6295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6655 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
