| Clone Name | rbaal35i15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY676928.1| Oryza sativa (indica cultivar-group) transcription factor WRKY10 (WRKY10) mRNA, complete cds Length = 1743 Score = 133 bits (67), Expect = 6e-28 Identities = 166/197 (84%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| ||||||||||||||||||||||||| || |||||||||| | |||| Sbjct: 1669 tggtgttggtgttgttcgcgttgctgttgccggctgccgccgcgtgctggccgcctatga 1610 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 1609 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 1550 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 1549 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 1490 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 1489 gcgcgaactgcgcggcg 1473 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 1736 gtctcgctgttggtgttgttgctcgtcgtgttgtt 1702
>ref|NM_188767.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1908 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 1834 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 1775 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 1774 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 1715 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 1714 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 1655 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 1654 gcgcgaactgcgcggcg 1638 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 1901 gtctcgctgttggtgttgttgctcgtcgtgttgtt 1867
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 49721 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 49662 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 49661 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 49602 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 49601 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 49542 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 49541 gcgcgaactgcgcggcg 49525 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 49788 gtctcgctgttggtgttgttgctcgtcgtgttgtt 49754
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 82259 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 82200 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 82199 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 82140 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 82139 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 82080 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 82079 gcgcgaactgcgcggcg 82063 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 82326 gtctcgctgttggtgttgttgctcgtcgtgttgtt 82292
>tpg|BK005004.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 1 (WRKY1) gene, complete cds Length = 2434 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 2360 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 2301 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 2300 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 2241 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 2240 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 2181 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 2180 gcgcgaactgcgcggcg 2164 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 2427 gtctcgctgttggtgttgttgctcgtcgtgttgtt 2393
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 8085608 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 8085549 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 8085548 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 8085489 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 8085488 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 8085429 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 8085428 gcgcgaactgcgcggcg 8085412 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 8085675 gtctcgctgttggtgttgttgctcgtcgtgttgtt 8085641
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C11 Length = 139399 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 3326 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 3267 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 3266 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 3207 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 3206 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 3147 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 3146 gcgcgaactgcgcggcg 3130 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 3393 gtctcgctgttggtgttgttgctcgtcgtgttgtt 3359
>dbj|AK105509.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E04, full insert sequence Length = 1606 Score = 125 bits (63), Expect = 2e-25 Identities = 165/197 (83%), Gaps = 9/197 (4%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttgccggcggc------gtgctggccggccatga 366 |||||||| |||||||||||||||||||||| || || |||||||||| | |||| Sbjct: 1234 tggtgttggtgttgttcgcgttgctgttgccagctgccgccgcgtgctggccgcctatga 1175 Query: 367 tggacgagattgccgcggcgagcgccaccgtgaagtttgggtctgcggtgatcgcagccg 426 |||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| Sbjct: 1174 tggacgtgatcgccgccgcgagcgccaccgtgaagttggggtcagcggtgatcgccgccg 1115 Query: 427 ccgctgcactgacgctgtcggacagctggcctggcag--gccc-atgggctgcctaggct 483 |||| || |||||| ||||||| || |||| ||||| |||| || ||| |||| || | Sbjct: 1114 ccgccgcgctgacggtgtcggagagagggccaggcagctgcccgatcggcggcctcggtt 1055 Query: 484 gcgcgaactgcccggcg 500 ||||||||||| ||||| Sbjct: 1054 gcgcgaactgcgcggcg 1038 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 252 gtctcgctgttggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||||||||||||||||||| Sbjct: 1301 gtctcgctgttggtgttgttgctcgtcgtgttgtt 1267
>gb|AY023191.1| Oryza sativa microsatellite MRG5516 containing (GCG)X8, genomic sequence Length = 224 Score = 54.0 bits (27), Expect = 5e-04 Identities = 88/106 (83%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 398 gaagtttgggtctgcggtgatcgcagccgccgctgcactgacgctgtcggacagctggcc 457 |||||| ||||| ||||||||||| |||||||| || |||||| ||||||| || |||| Sbjct: 1 gaagttggggtcagcggtgatcgccgccgccgccgcgctgacggtgtcggagagagggcc 60 Query: 458 tggcag--gccc-atgggctgcctaggctgcgcgaactgcccggcg 500 ||||| |||| || ||| |||| || |||||||||||| ||||| Sbjct: 61 aggcagctgcccgatcggcggcctcggttgcgcgaactgcgcggcg 106
>gb|AE009177.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 203 of 256 of the complete sequence Length = 10933 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 366 atggacgagattgccgcggcgagcgcca 393 ||||| |||||||||||||||||||||| Sbjct: 7188 atggaggagattgccgcggcgagcgcca 7215
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 366 atggacgagattgccgcggcgagcgcca 393 ||||| |||||||||||||||||||||| Sbjct: 2253823 atggaggagattgccgcggcgagcgcca 2253850
>gb|AY167021.1| Cannabis sativa microsatellite ANUCS302 sequence Length = 500 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 302 gttgttcttagtggtgttgttgttgttc 329 |||||| ||||||||||||||||||||| Sbjct: 447 gttgttgttagtggtgttgttgttgttc 420
>emb|BX545917.6| Zebrafish DNA sequence from clone DKEY-27J13 in linkage group 8, complete sequence Length = 139530 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 312 gtggtgttgttgttgttcgcgttgctgttg 341 ||||||||||||||||| |||||| ||||| Sbjct: 81055 gtggtgttgttgttgttggcgttgttgttg 81084
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 gcaaaatcacaaaagaaaagga 98 |||||||||||||||||||||| Sbjct: 27300158 gcaaaatcacaaaagaaaagga 27300179
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 481 gctgcgcgaactgcccggcgtccacc 506 ||||||||| |||||||||||||||| Sbjct: 1020589 gctgcgcgagctgcccggcgtccacc 1020564
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 gcaaaatcacaaaagaaaagga 98 |||||||||||||||||||||| Sbjct: 157174 gcaaaatcacaaaagaaaagga 157195
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 gcaaaatcacaaaagaaaagga 98 |||||||||||||||||||||| Sbjct: 42985 gcaaaatcacaaaagaaaagga 43006
>dbj|AK108036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C07, full insert sequence Length = 1482 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 gcaaaatcacaaaagaaaagga 98 |||||||||||||||||||||| Sbjct: 1303 gcaaaatcacaaaagaaaagga 1282
>gb|AC151980.3| Mus musculus BAC clone RP24-83M3 from chromosome 8, complete sequence Length = 253457 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tggtatcaagaccaaacaaac 137 ||||||||||||||||||||| Sbjct: 186806 tggtatcaagaccaaacaaac 186826
>emb|AL356740.19| Human DNA sequence from clone RP11-120K24 on chromosome 13 Contains the 3' end of the ATP11A gene for ATPase Class VI type 11A, the 5' end of the MCF2L gene for a MCF.2 cell line derived transforming sequence-like gene, a novel gene and eight CpG islands, complete sequence Length = 170928 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 aaagaaaaggagtgatcgtat 108 ||||||||||||||||||||| Sbjct: 25313 aaagaaaaggagtgatcgtat 25293
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16 Length = 349008 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gccggcggcgtgctggccggc 361 ||||||||||||||||||||| Sbjct: 183864 gccggcggcgtgctggccggc 183884
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gccggcggcgtgctggccggc 361 ||||||||||||||||||||| Sbjct: 102611 gccggcggcgtgctggccggc 102631
>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence Length = 155839 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 tttctcaactcttttccaact 231 ||||||||||||||||||||| Sbjct: 134897 tttctcaactcttttccaact 134917
>dbj|AK016745.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933408N05 product:unclassifiable, full insert sequence Length = 1586 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tggtatcaagaccaaacaaac 137 ||||||||||||||||||||| Sbjct: 5 tggtatcaagaccaaacaaac 25
>gb|AC091887.3| Homo sapiens chromosome 5 clone RP11-118M9, complete sequence Length = 171095 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tttctcaactcttttccaact 231 ||||||||||||||||||||| Sbjct: 132627 tttctcaactcttttccaact 132607
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 gccgcggcgagcgccaccgtg 398 ||||||||||||||||||||| Sbjct: 1811134 gccgcggcgagcgccaccgtg 1811154
>dbj|AK116673.1| Ciona intestinalis cDNA, clone:cicl031p12, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 313 tggtgttgttgttgttcgcgttgctgttg 341 |||||||||||||||| | |||||||||| Sbjct: 232 tggtgttgttgttgttggtgttgctgttg 204
>emb|AL935138.7| Mouse DNA sequence from clone RP23-222H15 on chromosome 2, complete sequence Length = 139189 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 atcacaaaagaaaaggagtga 102 ||||||||||||||||||||| Sbjct: 113879 atcacaaaagaaaaggagtga 113899
>ref|XM_473099.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||| |||| Sbjct: 399 ggtgttgttgctcgtcgtggtgtt 376
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 904995 ctggtcgtcgtcacgttgtt 905014
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 2004602 ctggtcgtcgtcacgttgtt 2004583
>ref|XM_364173.1| Magnaporthe grisea 70-15 predicted protein (MG09018.4) partial mRNA Length = 1137 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gtggtgttgttgttgttcgc 331 |||||||||||||||||||| Sbjct: 758 gtggtgttgttgttgttcgc 739
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ctgcgcgaactgcccggcgt 501 |||||||||||||||||||| Sbjct: 3256466 ctgcgcgaactgcccggcgt 3256485
>gb|AE006177.1| Pasteurella multocida subsp. multocida str. Pm70 section 144 of 204 of the complete genome Length = 14087 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 11966 ctggtcgtcgtcacgttgtt 11947
>ref|XM_718496.1| Candida albicans SC5314 hypothetical protein (CaO19_4907), mRNA Length = 1818 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 tagtggtgttgttgttgttcgcgttgct 337 ||||| ||||||||||||||| |||||| Sbjct: 1366 tagtgttgttgttgttgttcgtgttgct 1339
>ref|XM_718308.1| Candida albicans SC5314 hypothetical protein (CaO19_12373), mRNA Length = 1818 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 tagtggtgttgttgttgttcgcgttgct 337 ||||| ||||||||||||||| |||||| Sbjct: 1366 tagtgttgttgttgttgttcgtgttgct 1339
>ref|XM_710510.1| Candida albicans SC5314 putative mitochondrial ATPase (CaO19_10409), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 608 ttagtggtgttgttgttgtt 589
>ref|XM_710454.1| Candida albicans SC5314 putative mitochondrial ATPase (CaO19_2891), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 608 ttagtggtgttgttgttgtt 589
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atgcttggtatcaagaccaa 131 |||||||||||||||||||| Sbjct: 998402 atgcttggtatcaagaccaa 998421
>ref|XM_655392.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2880.2), mRNA Length = 3102 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 ggcccatgggctgcctaggctgcg 486 |||| ||||||||||||||||||| Sbjct: 2976 ggccgatgggctgcctaggctgcg 2953
>ref|XM_990138.1| PREDICTED: Mus musculus glycine receptor, alpha 1 subunit (Glra1), mRNA Length = 1922 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1166 ttagtggtgttgttgttgtt 1147
>gb|AC113095.14| Mus musculus chromosome 9, clone RP23-311A1, complete sequence Length = 205429 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 aaaatcacaaaagaaaaggagtga 102 ||||||||||||| |||||||||| Sbjct: 61138 aaaatcacaaaaggaaaggagtga 61115
>gb|AC132377.3| Mus musculus BAC clone RP24-81F14 from chromosome 16, complete sequence Length = 173662 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gaactaggggaaggaatgaa 50 |||||||||||||||||||| Sbjct: 30777 gaactaggggaaggaatgaa 30796
>gb|AC132576.3| Mus musculus BAC clone RP24-444F2 from chromosome 16, complete sequence Length = 135862 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaactaggggaaggaatgaa 50 |||||||||||||||||||| Sbjct: 8019 gaactaggggaaggaatgaa 8000
>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence Length = 121720 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atcacaaaagaaaaggagtg 101 |||||||||||||||||||| Sbjct: 9506 atcacaaaagaaaaggagtg 9487
>gb|AE004326.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 234 of 251 of the complete chromosome Length = 11047 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 8861 ctggtcgtcgtcacgttgtt 8842
>emb|CR683921.2|CNS0FQNX Tetraodon nigroviridis full-length cDNA Length = 1763 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gagaagctaatcctgaccaa 162 |||||||||||||||||||| Sbjct: 286 gagaagctaatcctgaccaa 305
>gb|AY129229.1| Mus musculus strain C57BL/6 glycine receptor alpha 1 subunit (Glra1) mRNA, complete cds; alternatively spliced Length = 1388 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1187 ttagtggtgttgttgttgtt 1168
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 763650 ctggtcgtcgtcacgttgtt 763631
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 484 gcgcgaactgcccggcgtccaccg 507 |||||||||||||||| ||||||| Sbjct: 4339619 gcgcgaactgcccggcatccaccg 4339642
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 483 tgcgcgaactgcccggcgtccacc 506 ||||| |||||||||||||||||| Sbjct: 3213323 tgcgcaaactgcccggcgtccacc 3213300
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 cggcggcgtgctggccggccatga 366 ||||||| |||||||||||||||| Sbjct: 253993 cggcggcatgctggccggccatga 253970
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 gccgcggcgagcgccaccgtgaag 401 |||||||||||||||||| ||||| Sbjct: 25624 gccgcggcgagcgccaccttgaag 25601
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||| |||| Sbjct: 54957 ggtgttgttgctcgtcgtggtgtt 54934
>emb|AL596207.10| Mouse DNA sequence from clone RP23-336J1 on chromosome 11 Contains the 5' end of the Sparc gene for secreted acidic cysteine rich glycoprotein, the Atox1 gene for ATX1 (antioxidant protein 1) homolog 1 (yeast), an upregulated during skeletal muscle growth 5 (Usmg5) pseudogene, the gene for Ras-GTPase-activating protein SH3-domain binding protein (G3bp-pending) (C87777), a novel gene, the Glra1 gene for glycine receptor, alpha 1 subunit, a novel gene, a ubiquitously expressed transcript (Uxt) pseudogene and one CpG island, complete sequence Length = 204037 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 108940 ttagtggtgttgttgttgtt 108959
>ref|NM_020492.2| Mus musculus glycine receptor, alpha 1 subunit (Glra1), mRNA Length = 1407 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1232 ttagtggtgttgttgttgtt 1213
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 385961 ctggtcgtcgtcacgttgtt 385980
>dbj|AK078258.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430545K04 product:glycine receptor, alpha 1 subunit, full insert sequence Length = 2387 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1638 ttagtggtgttgttgttgtt 1619
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggtgttgttgctcgtcgtgttgtt 286 ||||||||||||||||||| |||| Sbjct: 25271018 ggtgttgttgctcgtcgtggtgtt 25270995
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 aggcccatgggctgcctaggctgc 485 ||||||||||||||| |||||||| Sbjct: 1158729 aggcccatgggctgcttaggctgc 1158706
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 269366 ctggtcgtcgtcacgttgtt 269385
>gb|AE004577.1| Pseudomonas aeruginosa PAO1, section 138 of 529 of the complete genome Length = 13737 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 tgccggcggcgtgctggccggcca 363 |||||||||| ||||||||||||| Sbjct: 4660 tgccggcggcctgctggccggcca 4637
>gb|AF162936.2|AF162936 Streptomyces coelicolor A3(2) Na/H antiporter homolog gene, partial cds; and hypothetical protein (ushY), putative sigma factor SigH anti-sigma factor (ushX), and RNA polymerase alternative sigma factor (sigH) genes, complete cds Length = 3300 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 gccgcggcgagcgccaccgtgaag 401 |||||||||||||||||| ||||| Sbjct: 137 gccgcggcgagcgccaccttgaag 160
>gb|S73718.1|S73718 Glra1=inhibitory glycine receptor alpha 1 subunit {alternatively spliced} [mice, A/HeJ, brainstem, spinal cord, mRNA Mutant, 1431 nt] Length = 1431 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1256 ttagtggtgttgttgttgtt 1237
>gb|S73717.1|S73717 GLRA1=inhibitory glycine receptor alpha 1 subunit [mice, A/HeJ, brainstem, spinal cord, mRNA, 1407 nt] Length = 1407 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 1232 ttagtggtgttgttgttgtt 1213
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 ggctgcgcgaactgcccggc 499 |||||||||||||||||||| Sbjct: 1533546 ggctgcgcgaactgcccggc 1533527
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 aggcccatgggctgcctaggctgc 485 ||||||||||||||| |||||||| Sbjct: 60336 aggcccatgggctgcttaggctgc 60313
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ttgccggcggcgtgctggccggcc 362 |||||||||||||| ||||||||| Sbjct: 983770 ttgccggcggcgtggtggccggcc 983747
>emb|CR812466.18| Zebrafish DNA sequence from clone CH211-269M1 in linkage group 1, complete sequence Length = 138505 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 302 gttgttcttagtggtgttgttgttgttc 329 |||||| |||||| |||||||||||||| Sbjct: 69937 gttgttgttagtgttgttgttgttgttc 69910
>emb|X75840.1|MMGLRA19 M.musculus Glra1 gene (exon9) Length = 637 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 333 ttagtggtgttgttgttgtt 314
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 255578 ctggtcgtcgtcacgttgtt 255597
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctggtcgtcgtcacgttgtt 307 |||||||||||||||||||| Sbjct: 840667 ctggtcgtcgtcacgttgtt 840686
>gb|AF053747.1|AF053747 Arabidopsis thaliana dormancy-associated protein (DRM1) gene, complete cds Length = 4390 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atcacaaaagaaaaggagtg 101 |||||||||||||||||||| Sbjct: 2299 atcacaaaagaaaaggagtg 2280
>emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chromosome 2, complete sequence Length = 210427 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ttagtggtgttgttgttgtt 328 |||||||||||||||||||| Sbjct: 192665 ttagtggtgttgttgttgtt 192646
>gb|M14958.1|APLFMRFG Aplysia californica FMRFamide gene, complete cds Length = 2492 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 301 cgttgttcttagtggtgttgttgttgtt 328 ||||||| || ||||||||||||||||| Sbjct: 2487 cgttgttgttggtggtgttgttgttgtt 2460
>dbj|AB028218.1| Papilio xuthus PxRh5 mRNA for UV opsin, partial cds Length = 1547 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 257 gctgttggtgttgttgctcgtcgtgttg 284 |||||||| | ||||||||||||||||| Sbjct: 1181 gctgttggcggtgttgctcgtcgtgttg 1154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,621,574 Number of Sequences: 3902068 Number of extensions: 5621574 Number of successful extensions: 127202 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125916 Number of HSP's gapped (non-prelim): 1282 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)