| Clone Name | rbaal35i11 |
|---|---|
| Clone Library Name | barley_pub |
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor| Length = 307 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/70 (25%), Positives = 28/70 (40%) Frame = +1 Query: 181 PPWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSV 360 PP T T T+T C PP TT C ++S+P+ P + P P+ Sbjct: 42 PPCTTTTTTTTTTCAPPTQQSTTQPPC-TTSKPTTPKQTTTQLPCTTPTTTKATTTKPTT 100 Query: 361 WEMISQSSLT 390 + + + T Sbjct: 101 TKATTTKATT 110
>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2| Length = 1030 Score = 34.3 bits (77), Expect = 0.30 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Frame = -2 Query: 413 EKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPE 234 E+ + + R+ +++ D + + LP +V A+ GK LLD + T V E Sbjct: 497 EQETEESGARKTTQMVEDADAESLQT---LPPVVTAMGHVDHGKTTLLDAIRKTRVAAGE 553 Query: 233 SGG-RQHVEVRAVGVSHGG 180 +GG QH+ V V H G Sbjct: 554 AGGITQHIGAYHVDVEHNG 572
>Y1332_METJA (Q58728) Hypothetical GTP-binding protein MJ1332| Length = 393 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -2 Query: 458 DYVILPTIYEIE---KHHEKRGDVTSVREDWEIISHTDGDEAKRPA 330 DY+++PT EIE K EK G + D+EII + +E R A Sbjct: 240 DYIVIPTSAEIELALKRAEKAGIIKRKENDFEIIDESKVNEQMRRA 285
>IF2_OCEIH (Q8EQU1) Translation initiation factor IF-2| Length = 692 Score = 31.2 bits (69), Expect = 2.5 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 389 VREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHV 213 + ED ++ + + D + E PA+V + GK LLD + T V E+GG QH+ Sbjct: 173 ILEDTDLDKYIEEDAEENLQERPAVVTIMGHVDHGKTTLLDSIRHTKVTAGEAGGITQHI 232
>IF2_CARHZ (Q3AB98) Translation initiation factor IF-2| Length = 827 Score = 31.2 bits (69), Expect = 2.5 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = -2 Query: 434 YEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQA 255 YE+ E++ D+ W + D E+ P P +V + GK LLD + Sbjct: 299 YEVTVEKEEKEDI------WLLEETPDDPESLEPR--PPIVTVMGHVDHGKTSLLDAIRQ 350 Query: 254 TVVVHPESGG-RQHVEVRAVGVSHGG 180 T V E+GG QH + A V H G Sbjct: 351 TNVTATEAGGITQH--IGAYQVEHNG 374
>EFG1_GEOSL (Q74A61) Elongation factor G 1 (EF-G 1)| Length = 689 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 374 EIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEA 261 E+I+ DGD+ + + P L A+REG+D + + A Sbjct: 181 ELITFADGDQGRTVSRGPVPADLLDAAREGRDAVAEAA 218
>FTSK1_RALSO (Q8XRH0) DNA translocase ftsK 1| Length = 959 Score = 30.8 bits (68), Expect = 3.3 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 551 HRGIVCDHHVFRIVQHWLHAGEPD 480 H V D V R+V+HW GEP+ Sbjct: 845 HGAFVADEEVHRVVEHWKQFGEPE 868
>IF2_HELPY (P55972) Translation initiation factor IF-2| Length = 944 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -2 Query: 461 NDYVILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGK 282 ND++ +I + + V + E++E+ +G + +RP +V + GK Sbjct: 403 NDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPP----VVTIMGHVDHGK 458 Query: 281 DGLLDEAQATVVVHPESGG-RQHV 213 LLD+ + V H E+GG QH+ Sbjct: 459 TSLLDKIRDKRVAHTEAGGITQHI 482
>IF2_HELPJ (Q9ZM46) Translation initiation factor IF-2| Length = 949 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -2 Query: 461 NDYVILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGK 282 ND++ +I + + V + E++E+ +G + +RP +V + GK Sbjct: 408 NDFLDKDSIEILAEEFHLEISVQNTLEEFEVEEVLEGVKKERPP----VVTIMGHVDHGK 463 Query: 281 DGLLDEAQATVVVHPESGG-RQHV 213 LLD+ + V H E+GG QH+ Sbjct: 464 TSLLDKIRDKRVAHTEAGGITQHI 487
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/75 (29%), Positives = 28/75 (37%) Frame = +1 Query: 181 PPWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSV 360 PP TP+ T+T PP+ TTT ++ PS P S PT S Sbjct: 1652 PPTTTPSPPTTTTPSPPI---TTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSP 1708 Query: 361 WEMISQSSLTDVTSP 405 + S T SP Sbjct: 1709 ITTTTTPSSTTTPSP 1723
>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2| Length = 989 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -2 Query: 380 DWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHV 213 D EI S +D D + P +V + GK LLD + + VV E+GG QH+ Sbjct: 472 DVEIDSSSDVDPEETLKSRPPVVTIMGHVDHGKTSLLDALRGSDVVRGEAGGITQHI 528
>NOS1_ARATH (Q66GP9) Nitric-oxide synthase 1 (EC 1.14.13.39) (AtNOS1)| Length = 561 Score = 30.0 bits (66), Expect = 5.6 Identities = 24/83 (28%), Positives = 34/83 (40%) Frame = +3 Query: 189 ADSNSPDFHMLPASALRVDHHSGLRLVQQAILTLTRCRQRTNHGGELGRSFGLVAVSVGD 368 +D +SP F L L+ HH ++ L+ T GG G G VS + Sbjct: 118 SDVDSPGFVDLVTYELKKKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADE 177 Query: 369 DLPVLPHRRDVATFLVVLLDLVD 437 L H R +V L+D+VD Sbjct: 178 LREKLSHLRHEKALIVKLVDIVD 200
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = -2 Query: 392 SVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQH 216 + ++ E+I TD R P +V + GK LLD + V E+GG QH Sbjct: 598 AAKKTTEMIEETDLAHLIRR---PPVVTVMGHVDHGKTSLLDAIRKARVAAVEAGGITQH 654 Query: 215 VEVRAVGVSHGG 180 + V + HGG Sbjct: 655 IGAYQVEIDHGG 666
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +1 Query: 184 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 363 P + T +S+ P S TT + A + PS + ++ SAP P+ Sbjct: 499 PVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTESSSAPVPTPS 558 Query: 364 EMISQSSLTDVTS 402 ++SS T VTS Sbjct: 559 SSTTESSSTPVTS 571 Score = 29.6 bits (65), Expect = 7.3 Identities = 19/77 (24%), Positives = 31/77 (40%) Frame = +1 Query: 184 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 363 P TP++ T+ P++ TT + A PS + ++ SAP V Sbjct: 484 PVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVT 543 Query: 364 EMISQSSLTDVTSPRFS 414 ++SS V +P S Sbjct: 544 SSTTESSSAPVPTPSSS 560 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/77 (23%), Positives = 31/77 (40%) Frame = +1 Query: 184 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 363 P TP++ T+ P++ TT + A PS + ++ SAP P+ Sbjct: 457 PVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPS 516 Query: 364 EMISQSSLTDVTSPRFS 414 ++SS +P S Sbjct: 517 SSTTESSSAPAPTPSSS 533
>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2| Length = 836 Score = 30.0 bits (66), Expect = 5.6 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Frame = -2 Query: 380 DWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVR 204 D E + T D+A+ P ++ + GK LLD + T VV E+GG QH+ Sbjct: 316 DVEHVIDTVEDKAEDLQPRPPIITIMGHVDHGKTSLLDAIRKTSVVSGEAGGITQHIGAY 375 Query: 203 AVGVSHGG*LRGLLQYLSS*GDCTYCKPLMHIRCGQV 93 V G +L +L + G + M R QV Sbjct: 376 QVKTESG----AVLTFLDTPGHAAFTS--MRARGAQV 406
>FTSK_SHEON (Q8EER3) DNA translocase ftsK| Length = 911 Score = 29.6 bits (65), Expect = 7.3 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%) Frame = -2 Query: 551 HRGIVCDHHVFRIVQHWLHAGEPDPFYDPLN-----DYVILP--TIYEIEKH-------- 417 H + DH V R+V W G+P + LN + V+LP T E++ Sbjct: 794 HGAFIDDHEVHRVVADWCARGKPQYIDEILNGVSEGEQVLLPGETAESDEEYDPLYDEAV 853 Query: 416 ----HEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDG 276 +RG ++SV+ ++I + A R E M G +SA +G +G Sbjct: 854 AFVTETRRGSISSVQRKFKI----GYNRAARIIEQMEMQGVVSA--QGHNG 898
>MOAC_RALSO (Q8Y1X7) Molybdenum cofactor biosynthesis protein C| Length = 158 Score = 29.6 bits (65), Expect = 7.3 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Frame = -2 Query: 449 ILPTIYEIEKHHE-KRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGL 273 +LPT + + + K+GDV + I+ G AKR ++L + L+ ++ D Sbjct: 36 MLPTTFALVRDGTAKKGDVLGIAR----IAAIQG--AKRTSDLIPLCHPLALTKVAVDFE 89 Query: 272 LDEAQATV--VVHPESGGRQHVEVRAV 198 LDEA TV V E+ G+ VE+ A+ Sbjct: 90 LDEADRTVRCTVRAETHGQTGVEMEAL 116
>IF2_XYLFA (Q9PGR3) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 7.3 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -2 Query: 371 IISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVRAVG 195 +++HT+ + P P +V + GK LLD + T + E+GG QH +G Sbjct: 378 LLAHTEEVHGE-PVPRPPVVTIMGHVDHGKTSLLDYIRRTKIAVGEAGGITQH-----IG 431 Query: 194 VSHGG*LRGLLQYLSS*GDCTY 129 H RG++ +L + G + Sbjct: 432 AYHVETPRGVISFLDTPGHAAF 453
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 29.3 bits (64), Expect = 9.6 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -2 Query: 374 EIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVRAV 198 E++ +D D +R + ++G + GK LLD + V E+GG QH+ V Sbjct: 432 EMLESSDLDHLQRRPPVVTIMGHVD---HGKTTLLDAIRNAKVAQGEAGGITQHIGAYHV 488 Query: 197 GVSHGG 180 V H G Sbjct: 489 DVEHNG 494
>IF2_NEIMB (Q9JYD2) Translation initiation factor IF-2| Length = 962 Score = 29.3 bits (64), Expect = 9.6 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = -2 Query: 356 DGDEAKRPAELPA--MVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVRAVGVSH 186 +G EA LP +V + GK LLD + T VV E+GG QH +G H Sbjct: 451 EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQH-----IGAYH 505 Query: 185 GG*LRGLLQYLSS*G 141 RG++ +L + G Sbjct: 506 VETPRGVITFLDTPG 520
>IF2_LACSS (Q38W81) Translation initiation factor IF-2| Length = 937 Score = 29.3 bits (64), Expect = 9.6 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = -2 Query: 449 ILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLL 270 +L T Y IE + D+ + +E + +D + RP +V + GK LL Sbjct: 402 LLATDYGIEAEQKVEVDIADIDSVFETEAKSDANLVSRPP----VVTIMGHVDHGKTTLL 457 Query: 269 DEAQATVVVHPESGG-RQHV 213 D + + V E+GG QH+ Sbjct: 458 DNLRNSHVTDGEAGGITQHI 477
>IF2_LISMO (Q8Y7F6) Translation initiation factor IF-2| Length = 779 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 434 YEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQA 255 Y ++ E + DVT + +E + DE+K E P +V + GK LLD + Sbjct: 246 YGVQVEEEIKVDVTDLDVYFENELNEAVDESKL-VERPPVVTIMGHVDHGKTTLLDSLRN 304 Query: 254 TVVVHPESGG-RQHV 213 T V E+GG QH+ Sbjct: 305 TKVTLGEAGGITQHI 319
>SYV_SYNP6 (Q5N3J4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 909 Score = 29.3 bits (64), Expect = 9.6 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +1 Query: 517 RNTWWSHTIPRWSAA--TPILATASRPSAFADSA 612 R WW H IP W A T + T S P A SA Sbjct: 410 RQLWWGHQIPAWYAVSETNGVVTDSTPFVVAKSA 443
>IL17_BOVIN (Q687Y7) Interleukin-17A precursor (IL-17A) (IL-17)| Length = 153 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 237 RVDHHSGLRLVQQAILTLTRCRQRTNHGGELGRSFGLVAVSVGDDLPVLPH 389 +VDHH +QQ IL L R Q H L + LVAV P++ H Sbjct: 103 KVDHHMNSVTIQQEILVLRRESQHCPHSFRLEKM--LVAVGCTCVTPIVRH 151
>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)| (Tracheobronchial mucin) (TBM) (Major airway glycoprotein) (Fragment) Length = 1233 Score = 29.3 bits (64), Expect = 9.6 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 160 CNRPRS*PPWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPS 291 C+RP P + PT + ST P G +TTV + P LPS Sbjct: 681 CHRPHPTPTTVGPTTVGSTTVGPTTVG-STTVGPTTPPAPCLPS 723
>IF2_LISMF (Q71ZZ7) Translation initiation factor IF-2| Length = 782 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 434 YEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQA 255 Y ++ E + DVT + +E + DE+K E P +V + GK LLD + Sbjct: 249 YGVQVEEEIKVDVTDLDVYFENELNEAVDESKL-VERPPVVTIMGHVDHGKTTLLDSLRN 307 Query: 254 TVVVHPESGG-RQHV 213 T V E+GG QH+ Sbjct: 308 TKVTLGEAGGITQHI 322
>IF2_LISIN (Q92C29) Translation initiation factor IF-2| Length = 782 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -2 Query: 434 YEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQA 255 Y ++ E + DVT + +E + DE+K E P +V + GK LLD + Sbjct: 249 YGVQVEEEIKVDVTDLDVYFENELNEAVDESKL-VERPPVVTIMGHVDHGKTTLLDSLRN 307 Query: 254 TVVVHPESGG-RQHV 213 T V E+GG QH+ Sbjct: 308 TKVTLGEAGGITQHI 322
>IF2_BACSU (P17889) Translation initiation factor IF-2| Length = 716 Score = 29.3 bits (64), Expect = 9.6 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = -2 Query: 464 LNDYVILPTIYEIEKHHEKRGDVTSVREDWEIISHTDGDEAKRPAELPAMVGALSASREG 285 +N + TI I + + V E+ E+ + + D + P +V + G Sbjct: 172 INQELDKDTIELIASEYGVETEEVIVLEETELEKYEEPDNEEDLEIRPPVVTIMGHVDHG 231 Query: 284 KDGLLDEAQATVVVHPESGG-RQHV 213 K LLD + T VV E+GG QH+ Sbjct: 232 KTTLLDSIRKTKVVEGEAGGITQHI 256
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 29.3 bits (64), Expect = 9.6 Identities = 29/142 (20%), Positives = 44/142 (30%) Frame = +1 Query: 184 PWLTPTALTSTCCRPPLSGWTTTVACASSSRPSLPSRDADSAPTMXXXXXXXXXXXPSVW 363 P T T+ TST P + T+T S++ + + + PT S Sbjct: 138 PTTTITSTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTT 197 Query: 364 EMISQSSLTDVTSPRFSWCFSIS*MVGRMT*SLRXXXXXXXXPACSQCWTMRNTWWSHTI 543 S +S T TS T + P S T T T Sbjct: 198 PTTSTTSTTPTTSTT---------STTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTT 248 Query: 544 PRWSAATPILATASRPSAFADS 609 P S+ + T++ P+ S Sbjct: 249 PTTSSTSTTPTTSTTPTTSTTS 270
>IF2_XYLFT (Q87EV4) Translation initiation factor IF-2| Length = 892 Score = 29.3 bits (64), Expect = 9.6 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -2 Query: 371 IISHTDGDEAKRPAELPAMVGALSASREGKDGLLDEAQATVVVHPESGG-RQHVEVRAVG 195 +++HT+ + P P +V + GK LLD + T + E+GG QH +G Sbjct: 378 LLAHTEELHGE-PVPRPPVVTIMGHVDHGKTSLLDYIRRTKIAVGEAGGITQH-----IG 431 Query: 194 VSHGG*LRGLLQYLSS*GDCTY 129 H RG++ +L + G + Sbjct: 432 AYHVETPRGVISFLDTPGHAAF 453 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,018,507 Number of Sequences: 219361 Number of extensions: 1894698 Number of successful extensions: 6511 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 6185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6501 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)